Query gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 113 out of 921 Neff 4.8 Searched_HMMs 33803 Date Wed Jun 1 15:53:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780715.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3i1n_P 50S ribosomal protein 100.0 2E-43 0 294.3 5.5 113 1-118 2-114 (115) 2 >2zjr_M 50S ribosomal protein 100.0 8.5E-43 0 290.2 5.7 114 21-134 1-114 (143) 3 >2ftc_K 39S ribosomal protein 100.0 1.2E-38 3.4E-43 264.2 8.0 98 21-119 1-98 (98) 4 >3bbo_R Ribosomal protein L19; 100.0 1.1E-36 3.4E-41 251.6 -3.2 91 24-115 1-91 (91) 5 >2j01_T 50S ribosomal protein 100.0 2.1E-31 6.1E-36 218.4 2.4 80 21-100 1-80 (80) 6 >2e6z_A Transcription elongati 82.2 3.8 0.00011 21.2 5.8 51 21-82 5-55 (59) 7 >1zq1_A Glutamyl-tRNA(Gln) ami 68.7 8.8 0.00026 18.9 5.8 62 24-96 12-75 (82) 8 >1jb7_A Telomere-binding prote 66.6 8.5 0.00025 19.0 4.1 26 44-69 51-82 (180) 9 >2d6f_A Glutamyl-tRNA(Gln) ami 56.0 15 0.00044 17.5 4.8 60 24-98 16-76 (81) 10 >1nz9_A Transcription antiterm 50.4 18 0.00054 16.9 4.1 30 22-58 3-32 (58) 11 >1ugp_B NitrIle hydratase beta 50.0 7.5 0.00022 19.4 1.4 35 21-56 3-41 (93) 12 >2zzd_A Thiocyanate hydrolase 47.6 8.5 0.00025 19.0 1.4 35 21-56 4-42 (96) 13 >3hht_B NitrIle hydratase beta 46.4 9.2 0.00027 18.8 1.4 35 21-56 2-40 (92) 14 >1k0r_A NUSA; two component ar 45.2 22 0.00065 16.4 3.7 31 17-47 55-87 (92) 15 >2qdy_B NitrIle hydratase subu 43.4 11 0.00032 18.4 1.4 32 21-53 7-42 (99) 16 >2asb_A Transcription elongati 38.1 28 0.00084 15.7 3.7 31 17-47 44-76 (81) 17 >2zou_A Spondin-1; beta-sandwi 33.2 34 0.001 15.3 5.1 32 21-57 31-63 (149) 18 >1qzg_A Protection of telomere 33.2 34 0.001 15.3 3.4 28 43-70 43-78 (187) 19 >1r3e_A TRNA pseudouridine syn 32.8 34 0.001 15.2 3.3 50 19-81 30-79 (85) 20 >1vq8_T 50S ribosomal protein 32.6 35 0.001 15.2 5.4 68 23-99 23-92 (101) 21 >1y43_B Aspergillopepsin II he 29.8 39 0.0011 14.9 4.9 42 23-83 56-97 (118) 22 >3frn_A Flagellar protein FLGA 28.2 41 0.0012 14.7 4.4 47 22-74 1-47 (71) 23 >2do3_A Transcription elongati 27.5 42 0.0013 14.6 3.3 29 23-58 17-45 (69) 24 >3db3_A E3 ubiquitin-protein l 26.3 44 0.0013 14.5 6.9 65 23-88 3-67 (72) 25 >3bbo_W Ribosomal protein L24; 26.1 23 0.00067 16.4 0.7 58 23-87 68-136 (140) 26 >3kd4_A Putative protease; str 25.0 47 0.0014 14.4 5.4 21 18-38 100-120 (209) 27 >3coo_A Spondin-1; reelin-N do 23.5 50 0.0015 14.2 4.2 32 21-57 46-78 (180) 28 >1c05_A Ribosomal protein S4 d 22.7 52 0.0015 14.1 2.0 17 17-33 7-25 (83) 29 >2nn6_I 3'-5' exoribonuclease 22.2 53 0.0016 14.0 3.0 20 24-43 61-80 (94) 30 >2zjr_R 50S ribosomal protein 22.1 54 0.0016 14.0 2.8 58 23-87 15-83 (87) 31 >3i4o_A Translation initiation 20.9 30 0.0009 15.6 0.5 13 23-35 53-65 (79) 32 >1yz6_A Probable translation i 20.8 57 0.0017 13.8 3.1 16 20-35 4-19 (83) No 1 >>3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... (P:) Probab=100.00 E-value=2e-43 Score=294.25 Aligned_cols=113 Identities=55% Similarity=0.905 Sum_probs=109.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 93589997999999760279897378998999999835887740123453543136666433886300356130289991 Q gi|254780715|r 1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80 (141) Q Consensus 1 Mnli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl 80 (141) +|+|+.+|++++ +.++|+|+|||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+ T Consensus 2 ~~Li~~ie~~~~-----k~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~gvGVE~~fpl 76 (115) T 3i1n_P 2 SNIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT 76 (115) T ss_dssp CCTTTHHHHTTC-----CSCCCCCCTTCCCEEEEEEECSSCEEEEEEECEEEEECCCGGGCCEEEECCBTTBCEEEEECT T ss_pred HHHHHHHHHHHH-----HCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEC T ss_conf 589999999984-----056998499989999999846885158899999999968984037988996377567999981 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHC Q ss_conf 07861012220002046787687508884102201200 Q gi|254780715|r 81 YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENT 118 (141) Q Consensus 81 ~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~ 118 (141) |||+|++|+|+++|||||||||||||+.||+|||||+. T Consensus 77 ~SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~ 114 (115) T 3i1n_P 77 HSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 114 (115) T ss_dssp TCTTTCEEECCSCBCCSCSCCGGGGGTCSGGGCCCBCC T ss_pred CCCCCCCEEEECCCCEEEEEEEEECCCCCHHHHHHHHC T ss_conf 79982202443158152100555204722677644521 No 2 >>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (M:24-166) Probab=100.00 E-value=8.5e-43 Score=290.23 Aligned_cols=114 Identities=53% Similarity=0.907 Sum_probs=105.4 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHHHHHH Q ss_conf 89737899899999983588774012345354313666643388630035613028999107861012220002046787 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSK 100 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkvRrak 100 (141) +|+|++||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||+|++|+|+++||||||| T Consensus 1 iP~f~~GD~V~V~~~i~eg~k~RvQ~f~GvvI~~~~~Gl~stftvRki~~gvGVEr~fpl~SP~I~~IeVirrgKvRRAK 80 (143) T 2zjr_M 1 LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAK 80 (143) T ss_dssp CCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECCCCSSSC T ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99848998999999965888655116657899961788631477244525734477645419204233011021677888 Q ss_pred HHHHCCCCCCEEEHHHHCCCCCCCCCCCCHHHHH Q ss_conf 6875088841022012001212365432002333 Q gi|254780715|r 101 LYYLQDLRGKAARIKENTGKRAKALNEEVRRAAL 134 (141) Q Consensus 101 LyYLR~~~gk~arik~~~~~~~~~~~~~~~~~~~ 134 (141) ||||||+.||+|||+++................. T Consensus 81 LYYLR~~~gK~arike~~~~~~~~~~~~~~~~~~ 114 (143) T 2zjr_M 81 LYYLRELRGKAARIKSDRSRVMKDAARAQQDKAN 114 (143) T ss_dssp CGGGCC---------------------------- T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 8877725236778788876230011112200022 No 3 >>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (K:) Probab=100.00 E-value=1.2e-38 Score=264.16 Aligned_cols=98 Identities=33% Similarity=0.585 Sum_probs=95.0 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHHHHHH Q ss_conf 89737899899999983588774012345354313666643388630035613028999107861012220002046787 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSK 100 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkvRrak 100 (141) +|+|+|||+|+|++++.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||+|++|||+++||||||| T Consensus 1 iP~f~~GD~v~V~~~i~e-~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~g~GVE~~f~l~SP~I~~IeV~~~~kvrRaK 79 (98) T 2ftc_K 1 IPEFYVGSILRVTTADPY-ASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDS 79 (98) T ss_pred CCCCCCCCEEEEEEEECC-CCEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEECEEEEHH T ss_conf 996379999999999778-8747887899999982389736999998328935999993889970237898406055200 Q ss_pred HHHHCCCCCCEEEHHHHCC Q ss_conf 6875088841022012001 Q gi|254780715|r 101 LYYLQDLRGKAARIKENTG 119 (141) Q Consensus 101 LyYLR~~~gk~arik~~~~ 119 (141) ||||||+.||+|+|++++. T Consensus 80 LyYLR~~~gk~a~ik~~~k 98 (98) T 2ftc_K 80 LLYLRDALPEYSTFDVNMK 98 (98) T ss_pred EEEHHCCCCCCCCEECCCC T ss_conf 0022228864443112359 No 4 >>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (R:143-233) Probab=100.00 E-value=1.1e-36 Score=251.59 Aligned_cols=91 Identities=36% Similarity=0.727 Sum_probs=88.9 Q ss_pred CCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHHHHHHHHH Q ss_conf 37899899999983588774012345354313666643388630035613028999107861012220002046787687 Q gi|254780715|r 24 FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYY 103 (141) Q Consensus 24 f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkvRrakLyY 103 (141) |+|||||+|++++.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||+|++|||+++|||||||||| T Consensus 1 f~~GD~v~V~~~i~e-~k~r~q~f~GvvI~~~~~g~~~tftlR~v~~g~gVE~~f~l~SP~i~~IeV~~~~kvrRaKLyY 79 (91) T 3bbo_R 1 IRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYY 79 (91) T ss_dssp SCCCSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSSCCCCCCCSCCCCSCSSC T ss_pred CCCCCEEEEEEEECC-CCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCHHHHHH T ss_conf 389989999999777-9875763589999985898634799999338724899985579975669998636300333344 Q ss_pred HCCCCCCEEEHH Q ss_conf 508884102201 Q gi|254780715|r 104 LQDLRGKAARIK 115 (141) Q Consensus 104 LR~~~gk~arik 115 (141) |||+.||+|||| T Consensus 80 LR~~~gk~arik 91 (91) T 3bbo_R 80 LRDKLPRLSTFK 91 (91) T ss_dssp CCCSSTTCSSCC T ss_pred HCCCCCCCCCCC T ss_conf 405866322539 No 5 >>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (T:19-98) Probab=99.96 E-value=2.1e-31 Score=218.44 Aligned_cols=80 Identities=51% Similarity=0.968 Sum_probs=79.0 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHHHHHH Q ss_conf 89737899899999983588774012345354313666643388630035613028999107861012220002046787 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSK 100 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkvRrak 100 (141) +|+|++||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||+|++|||+++||||||| T Consensus 1 iP~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftlR~i~~g~GVEr~f~l~SP~i~~IeVir~~kvRRAK 80 (80) T 2j01_T 1 LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAK 80 (80) T ss_dssp SCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSSSSCSCCCBCCCCBCCSSSS T ss_pred CCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCEEHHH T ss_conf 99828988999999975788413677556898983698630798888607864899999669987757887227301100 No 6 >>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=82.23 E-value=3.8 Score=21.23 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=37.5 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCC Q ss_conf 89737899899999983588774012345354313666643388630035613028999107 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYS 82 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~S 82 (141) --.|.|||.|.| .+|.-. ...|.+++.. +.++|++-.-.+.+-..-||..+ T Consensus 5 ~~~f~pGD~VeV----~~GEl~---~l~G~V~sv~----gd~Vti~p~~~dL~~~l~~p~~~ 55 (59) T 2e6z_A 5 SSGFQPGDNVEV----CEGELI---NLQGKILSVD----GNKITIMPKHEDLKDMLEFPAQE 55 (59) T ss_dssp CSSCCTTSEEEE----CSSTTT---TCEEEECCCB----TTEEEEEECCSSCCSCEEEETTT T ss_pred CCCCCCCCEEEE----ECCEEC---CCEEEEEEEC----CCEEEEEECCCCCCCEEECCHHH T ss_conf 255389998999----227753---7799999970----99899987642368615416798 No 7 >>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (A:1-82) Probab=68.67 E-value=8.8 Score=18.94 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=37.5 Q ss_pred CCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEC--CCCCCEEEEECCCCCEEEEEEEECCHH Q ss_conf 3789989999998358877401234535431366664338863003--561302899910786101222000204 Q gi|254780715|r 24 FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKIS--YGEGMNRLFPLYSPMIQDITVIRRGKV 96 (141) Q Consensus 24 f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~--~g~GVE~~fpl~SP~i~~Iev~r~gkv 96 (141) ..+||.|+|... +|. .-..|+|+++-.---.-+.+++| |.- +++|+.. -.|++||++.+++. T Consensus 12 ~~vGD~VrV~~~--~~~--~~~~~eGilmP~~e~s~~d~iVi-KLdnGYNvGi~~------~~i~~ievlek~~~ 75 (82) T 1zq1_A 12 INVGDFVRITKE--EDG--EEVTYEGYIXPPYELSAGDTLVL-KLENGYNIGIAL------EKIRRIEVLERAKV 75 (82) T ss_dssp CCTTCEEEEEEE--SSS--SEEECCEEECCCCTTCCCSEEEE-EETTSCEEEEEG------GGEEEEEEEECCCC T ss_pred CCCCCEEEEEEE--CCC--CCEEEEEEECCCCCCCCCCEEEE-ECCCCCEEEEEH------HHEEEEEEECCCCC T ss_conf 999987999992--388--85499999768865689998999-926881053037------89058998415778 No 8 >>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} (A:1-180) Probab=66.61 E-value=8.5 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=12.6 Q ss_pred CEEEEEEEEEE----CCCCC--CCEEEEEEEC Q ss_conf 01234535431----36666--4338863003 Q gi|254780715|r 44 IQAYEGVCIAR----SGRGI--NKNFTVRKIS 69 (141) Q Consensus 44 ~Q~F~GvvI~~----~~~G~--~stftvRki~ 69 (141) ...+-|||+.. +-+|- -.||+|-.-+ T Consensus 51 ~vnvigVV~d~~~P~~s~g~d~~~tl~I~D~S 82 (180) T 1jb7_A 51 PQHFYAVVIDATFPYKTNQERYICSLKIVDPT 82 (180) T ss_dssp CEEEEEEEEEECCCEECSSSCEEEEEEEEBTT T ss_pred EEEEEEEEEECCCCEECCCCEEEEEEEEECCC T ss_conf 06899999862386336997189999998067 No 9 >>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (A:1-81) Probab=56.03 E-value=15 Score=17.50 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=35.2 Q ss_pred CCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEC-CCCCCEEEEECCCCCEEEEEEEECCHHHH Q ss_conf 3789989999998358877401234535431366664338863003-56130289991078610122200020467 Q gi|254780715|r 24 FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKIS-YGEGMNRLFPLYSPMIQDITVIRRGKVRR 98 (141) Q Consensus 24 f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~-~g~GVE~~fpl~SP~i~~Iev~r~gkvRr 98 (141) ..+||.|+|. .++. .|+|+++-..-..-+.+++|.=-. +++|+. +.=.+||++.++.... T Consensus 16 ~~~GD~VrV~---k~~~-----~~eGilmPs~~~~~~d~iViKLdnGYNvGi~-------~~~i~ievlek~~~pk 76 (81) T 2d6f_A 16 IDVGDMVLVE---KPDV-----TYEGMVLDRADDADDRHIVLKLENGYNIGVE-------ISDARIELLEKGSEPR 76 (81) T ss_dssp CCTTCEEEEE---CSSC-----EEEEEECCCCTTSCSSEEEEECTTSCEEEEE-------CTTCCCCEEECCC--- T ss_pred CCCCCEEEEE---ECCE-----EEEEEEECCCCCCCCCEEEEECCCCCEEEEE-------HHHEEEEEEECCCCCC T ss_conf 9999889999---7998-----9999996886678999899993787117656-------1251799985277654 No 10 >>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:) Probab=50.42 E-value=18 Score=16.94 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=21.7 Q ss_pred CCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCC Q ss_conf 9737899899999983588774012345354313666 Q gi|254780715|r 22 PKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRG 58 (141) Q Consensus 22 P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G 58 (141) -+|.+||.|+| ..| -.+-|+|.+..+.... T Consensus 3 ~~~~~Gd~V~I----~~G---pF~g~~G~V~~id~~k 32 (58) T 1nz9_A 3 VAFREGDQVRV----VSG---PFADFTGTVTEINPER 32 (58) T ss_dssp CSCCTTCEEEE----CSG---GGTTCEEEEEEEETTT T ss_pred CCCCCCCEEEE----CCC---CCCCCEEEEEEEECCC T ss_conf 23159999999----246---8999889999990889 No 11 >>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} (B:134-226) Probab=49.98 E-value=7.5 Score=19.40 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=24.8 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECC Q ss_conf 897378998999999835887740123----453543136 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~ 56 (141) -|.|.+||.|+|.- .....-+|++.| .|++....+ T Consensus 3 ~prF~vGD~Vrvr~-~~~~~HtRlP~Y~RGk~G~I~~~~G 41 (93) T 1ugp_B 3 PPKFKEGDVVRFST-ASPKGHARRARYVRGKTGTVVKHHG 41 (93) T ss_dssp CCSCCTTCEEEECC-CCCSSCCCCCGGGTTCEEEEEEEEE T ss_pred CCCCCCCCEEEECC-CCCCCCEECCHHHCCCEEEEEEEEC T ss_conf 98357999889815-8999822176666687558999842 No 12 >>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A* (A:31-126) Probab=47.62 E-value=8.5 Score=19.03 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.6 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECC Q ss_conf 897378998999999835887740123----453543136 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~ 56 (141) -|.|.+||.|+|.- .....-+|++.| .|++....+ T Consensus 4 ~prF~vGD~Vrvr~-~~~~~HtRlP~Y~RGk~G~I~~~~g 42 (96) T 2zzd_A 4 KSKFNVGDRVRIKD-LPDLFYTRTMTYTRGATGTIVRLVY 42 (96) T ss_dssp SCSSCTTCEEEECC-CCCSSCCSSCGGGTTCEEEEEEEEE T ss_pred CCCCCCCCEEEEEE-CCCCCCEECCHHHCCCEEEEEEEEC T ss_conf 99458999999821-7999832485677888679999855 No 13 >>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_B 1v29_B (B:138-229) Probab=46.44 E-value=9.2 Score=18.84 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=24.2 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECC Q ss_conf 897378998999999835887740123----453543136 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~ 56 (141) -|.|.+||.|+|.- .....-+|++.| .|++....+ T Consensus 2 ~~rF~vGD~Vrvr~-~~~~~HtR~P~Y~RGk~G~I~~~~g 40 (92) T 3hht_B 2 SPRFKVGERIKTKN-IHPTGHTRFPRYARDKYGVIDEVYG 40 (92) T ss_dssp CCSCCTTCEEEECC-CCCSSCCSCCGGGTTCEEEEEEEEE T ss_pred CCCCCCCCEEEEEC-CCCCCCCCCHHHHCCCEEEEEEEEC T ss_conf 98578998778843-7999751254676787459998836 No 14 >>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} (A:113-204) Probab=45.24 E-value=22 Score=16.44 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=19.5 Q ss_pred HCCCCC--CCCCCCEEEEEEEEECCCCCCCEEE Q ss_conf 027989--7378998999999835887740123 Q gi|254780715|r 17 SKRSLP--KFSPGDTLCVKTIITEGDKSRIQAY 47 (141) Q Consensus 17 ~k~~~P--~f~~GD~v~V~~~i~eg~k~R~Q~F 47 (141) .+..+| .|++||.+++.+.-.+-.....|.| T Consensus 55 ~~eqip~E~~~~Gdrik~~i~~V~~~~kg~~I~ 87 (92) T 1k0r_A 55 AAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 87 (92) T ss_dssp GGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEE T ss_pred HHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEE T ss_conf 777599865899988999999999858997499 No 15 >>2qdy_B NitrIle hydratase subunit beta; post translation, lyase; 1.30A {Rhodococcus erythropolis} (B:114-212) Probab=43.43 E-value=11 Score=18.40 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=22.8 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEE Q ss_conf 897378998999999835887740123----453543 Q gi|254780715|r 21 LPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIA 53 (141) Q Consensus 21 ~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~ 53 (141) -|.|.+||.|+|.- .....-+|++.| .|++.. T Consensus 7 ~~rF~vGD~Vrvr~-~~~~~HtRlP~YvRGk~G~I~~ 42 (99) T 2qdy_B 7 TTTFEVGQRVRVRD-EYVPGHIRMPAYCRGRVGTISH 42 (99) T ss_dssp CCCCCTTCEEEECC-CCCSSCCSCCGGGTTCEEEEEE T ss_pred CCCCCCCCEEEECC-CCCCCCEECCHHHCCCEEEEEE T ss_conf 98679999899764-8999842276566687579986 No 16 >>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} (A:1-81) Probab=38.15 E-value=28 Score=15.75 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=19.6 Q ss_pred HCCCCC--CCCCCCEEEEEEEEECCCCCCCEEE Q ss_conf 027989--7378998999999835887740123 Q gi|254780715|r 17 SKRSLP--KFSPGDTLCVKTIITEGDKSRIQAY 47 (141) Q Consensus 17 ~k~~~P--~f~~GD~v~V~~~i~eg~k~R~Q~F 47 (141) .+..+| .|++||-+++.+.-.+-.....|.| T Consensus 44 ~~eqip~E~~~~Gdrik~~i~~V~~~~kgp~I~ 76 (81) T 2asb_A 44 AAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 76 (81) T ss_dssp GGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEE T ss_pred HHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEE T ss_conf 788699876799999999997999269826899 No 17 >>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extracellular matrix, glycoprotein, secreted; 1.45A {Homo sapiens} (A:) Probab=33.25 E-value=34 Score=15.26 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=23.6 Q ss_pred CCC-CCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCC Q ss_conf 897-3789989999998358877401234535431366 Q gi|254780715|r 21 LPK-FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGR 57 (141) Q Consensus 21 ~P~-f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~ 57 (141) .|+ +.||+.+.|++.-.++. .|.|..|.-+.. T Consensus 31 ~~~~y~pG~~~~VtL~~~~~~-----~F~GFllqAr~~ 63 (149) T 2zou_A 31 DPDFYKPGTSYRVTLSAAPPS-----YFRGFTLIALRE 63 (149) T ss_dssp CCSSBCTTCEEEEEEEECTTC-----CBSEEEEEEEET T ss_pred CCCEECCCCEEEEEEECCCCC-----CCCEEEEEEEEC T ss_conf 986055999799999815888-----503079898506 No 18 >>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} (A:) Probab=33.23 E-value=34 Score=15.26 Aligned_cols=28 Identities=7% Similarity=-0.067 Sum_probs=12.3 Q ss_pred CCEEEEEEEEEEC------CCC--CCCEEEEEEECC Q ss_conf 4012345354313------666--643388630035 Q gi|254780715|r 43 RIQAYEGVCIARS------GRG--INKNFTVRKISY 70 (141) Q Consensus 43 R~Q~F~GvvI~~~------~~G--~~stftvRki~~ 70 (141) ....+-|||+... ++| --.||+|=.-+. T Consensus 43 ~~VnvigVV~d~~~p~~s~~gg~d~~~tl~I~D~S~ 78 (187) T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC 78 (187) T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS T ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCC T ss_conf 888899999103687126889987799999975887 No 19 >>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} (A:225-309) Probab=32.81 E-value=34 Score=15.21 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=28.1 Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC Q ss_conf 798973789989999998358877401234535431366664338863003561302899910 Q gi|254780715|r 19 RSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY 81 (141) Q Consensus 19 ~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~ 81 (141) .+.+.|..||.|.|. .+++. .-|+.++. -++..+...-.|..+|..--+. T Consensus 30 ~~~~~f~~gd~V~I~---~~~g~-----~iavG~~~-----~ss~el~~~~~g~~v~~~h~~~ 79 (85) T 1r3e_A 30 KEWDGFKKGEVVRVF---NEEGR-----LLALAEAE-----RNSSFLETLRKHERNERVLTLR 79 (85) T ss_dssp CEECCCCTTCEEEEE---CSSSC-----EEEEEEES-----SCTTCCCCSCC----CEEEEEE T ss_pred CCCCCCCCCCEEEEE---CCCCE-----EEEEEEEC-----CCCCEEEEEECCCCCCCEEEEC T ss_conf 322457889999999---69991-----99999990-----7865156530358877488562 No 20 >>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (T:20-120) Probab=32.57 E-value=35 Score=15.19 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=37.1 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEE--CCCCCCEEEEECCCCCEEEEEEEECCHHHHH Q ss_conf 7378998999999835887740123453543136666433886300--3561302899910786101222000204678 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKI--SYGEGMNRLFPLYSPMIQDITVIRRGKVRRS 99 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki--~~g~GVE~~fpl~SP~i~~Iev~r~gkvRra 99 (141) .++.||+|.| +.-..|+. +|.|+.+.... ....|-.+ ...-|=+.-.|+|..++.=+...-....|-+ T Consensus 23 ~I~~GD~V~V---i~G~dkGk----~GkV~~V~~~~--~~V~Vegin~~k~~~k~~e~pIh~SnV~lv~~~~~~~~Rv~ 92 (101) T 1vq8_T 23 RVNAGDTVEV---LRGDFAGE----EGEVINVDLDK--AVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREA 92 (101) T ss_dssp ECCTTCEEEE---CSSTTTTC----EEEEEEEETTT--TEEEETTCEEECSSSCEEECCBCGGGEEEEECCCCCHHHHH T ss_pred CEECCCEEEE---EECCCCCC----CCEEEEEECCC--CEEEECCEEEEECCCCEEECCCCHHHEEEEECCCCCCHHHH T ss_conf 0316999999---15478997----51399998778--99999661899547982515446489799837679712533 No 21 >>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} (B:1-118) Probab=29.84 E-value=39 Score=14.90 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=26.6 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCC Q ss_conf 7378998999999835887740123453543136666433886300356130289991078 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSP 83 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP 83 (141) .+.+||.|.|++.-.-+. .-+++|-|.+.|.-+-+.+...+| T Consensus 56 ~v~~GD~i~v~Vt~~s~~-------------------~g~~~i~n~s~g~t~t~t~s~~~~ 97 (118) T 1y43_B 56 TISEGDSIKVTVEATSKS-------------------SGSATVENLTTGQSVTHTFSGNVE 97 (118) T ss_dssp CCCTTCEEEEEEEEEETT-------------------EEEEEEEETTTTEEEEEEECSCCS T ss_pred CCCCCCEEEEEEEECCCC-------------------CEEEEEEECCCCEEEEEEEECCCC T ss_conf 138999999999970799-------------------669999977799799999836899 No 22 >>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:208-278) Probab=28.24 E-value=41 Score=14.73 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=31.4 Q ss_pred CCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC Q ss_conf 97378998999999835887740123453543136666433886300356130 Q gi|254780715|r 22 PKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGM 74 (141) Q Consensus 22 P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GV 74 (141) |-++-||.|.|.+. .++= . ..-.-.+..+..++.++.|||...|--+ T Consensus 1 PlV~rG~~V~v~~~--~~g~-~---I~~~g~Al~~G~~Gd~IrVrN~~Sgkii 47 (71) T 3frn_A 1 PDVVKGQVVPAYVD--MGSI-K---VTTFVEVLENGYLGETVRAMNVESRKYV 47 (71) T ss_dssp CSBCTTCEEEEEC-------------CEEEEESSCBCTTCEEEEEC--CCCEE T ss_pred CCCCCCCEEEEEEE--CCCE-E---EEEEEEECCCCCCCCEEEEEECCCCCEE T ss_conf 51479988999960--5759-9---9997899878898988999988999989 No 23 >>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.51 E-value=42 Score=14.65 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=20.7 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCC Q ss_conf 737899899999983588774012345354313666 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRG 58 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G 58 (141) .|++||-|+| ..| +.+--.|+|+...+.- T Consensus 17 ~F~~GDhVkV----i~G---~~~getGlVV~v~~d~ 45 (69) T 2do3_A 17 YFKMGDHVKV----IAG---RFEGDTGLIVRVEENF 45 (69) T ss_dssp SCCTTCEEEE----SSS---TTTTCEEEEEEECSSC T ss_pred CCCCCCEEEE----ECC---EECCCCEEEEEEECCE T ss_conf 0579983899----064---6869628999993999 No 24 >>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, ligase, metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A (A:90-161) Probab=26.30 E-value=44 Score=14.51 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=35.9 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEE Q ss_conf 737899899999983588774012345354313666643388630035613028999107861012 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDI 88 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~I 88 (141) ++.+||+|.|.|.+.+ .++|=--|.-.+-.++.+-...-+...=.+++--++-+--.|---|-+| T Consensus 3 ~L~vG~~VMvNYN~d~-PkeRGfWYD~eI~~k~~tRt~kel~~~i~lG~d~l~dC~i~FvdEi~kI 67 (72) T 3db3_A 3 DLEVGQVVXLNYNPDN-PKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKI 67 (72) T ss_dssp GCCTTCEEEEEECSSS-TTSCCEEEEEEEEEEEECSSCEEEEEEEECSSSEEEEEEESCTTCCBCC T ss_pred HCCCCCEEEEECCCCC-CHHCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEE T ss_conf 8877769999758898-0024727889999843054120799999987872356379884325774 No 25 >>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (W:1-140) Probab=26.05 E-value=23 Score=16.38 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=32.7 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-----CCEEEEEEE------CCCCCCEEEEECCCCCEEE Q ss_conf 7378998999999835887740123453543136666-----433886300------3561302899910786101 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI-----NKNFTVRKI------SYGEGMNRLFPLYSPMIQD 87 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~-----~stftvRki------~~g~GVE~~fpl~SP~i~~ 87 (141) .|+.||+|.| +.-.+|+. +|.|+++....- +-+..-+.+ -.|-.++.-+|||.-++.= T Consensus 68 ~i~kGD~V~V---i~G~dkGk----~G~V~~V~~~~~~V~Vegvn~~~~~~~~~~~~~~g~~~~~e~pi~~SnV~l 136 (140) T 3bbo_W 68 HVKVGDTVKV---ISGGEKGK----IGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML 136 (140) T ss_dssp CSCCSSCEEE---CSSSSTTC----CCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE T ss_pred ECCCCCEEEE---EECCCCCC----EEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEECCEEHHHEEE T ss_conf 1058999999---14789993----215999987799999974568996027766557884577861475688678 No 26 >>3kd4_A Putative protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} (A:1-209) Probab=25.00 E-value=47 Score=14.36 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=16.4 Q ss_pred CCCCCCCCCCCEEEEEEEEEC Q ss_conf 279897378998999999835 Q gi|254780715|r 18 KRSLPKFSPGDTLCVKTIITE 38 (141) Q Consensus 18 k~~~P~f~~GD~v~V~~~i~e 38 (141) .-.+|.+++||+|...+.+.. T Consensus 100 ~~~~p~l~~Gdiie~~y~~~~ 120 (209) T 3kd4_A 100 VVVHTGLELGATIYLDYSIIT 120 (209) T ss_dssp EEECCSCCTTCEEEEEEEEEE T ss_pred EEECCCCCCCEEEEEEEEEEE T ss_conf 998789898819999999977 No 27 >>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular matrix, glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A (A:) Probab=23.50 E-value=50 Score=14.18 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=23.8 Q ss_pred CCC-CCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCC Q ss_conf 897-3789989999998358877401234535431366 Q gi|254780715|r 21 LPK-FSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGR 57 (141) Q Consensus 21 ~P~-f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~ 57 (141) .|. +.+|+++.|++.-.++. .|.|..|.-++. T Consensus 46 ~~~~y~pG~~~~Vtl~~~~~~-----~F~GFllqAr~~ 78 (180) T 3coo_A 46 DPDFYKPGTSYRVTLSAAPPS-----YFRGFTLIALRE 78 (180) T ss_dssp CCSEECTTCEEEEEEEECTTC-----CBSCCEEEEEET T ss_pred CCCCCCCCCEEEEEEEECCCC-----CCCEEEEEEECC T ss_conf 887546998799999931788-----622389898216 No 28 >>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159) Probab=22.70 E-value=52 Score=14.09 Aligned_cols=17 Identities=35% Similarity=0.814 Sum_probs=12.9 Q ss_pred HCCCCCC--CCCCCEEEEE Q ss_conf 0279897--3789989999 Q gi|254780715|r 17 SKRSLPK--FSPGDTLCVK 33 (141) Q Consensus 17 ~k~~~P~--f~~GD~v~V~ 33 (141) .+-++|. ++|||+|.|. T Consensus 7 kkVdIPSy~~k~gD~I~ik 25 (83) T 1c05_A 7 SRVNIPSYRVKPGQTIAVR 25 (83) T ss_dssp EECCCSSCBCCTTCEEEEC T ss_pred EEEEECCEEECCCCEEEEC T ss_conf 6998434162178487502 No 29 >>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (I:76-169) Probab=22.22 E-value=53 Score=14.02 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=11.4 Q ss_pred CCCCCEEEEEEEEECCCCCC Q ss_conf 37899899999983588774 Q gi|254780715|r 24 FSPGDTLCVKTIITEGDKSR 43 (141) Q Consensus 24 f~~GD~v~V~~~i~eg~k~R 43 (141) |++||+|++.+.-.+-.+.+ T Consensus 61 ~~~Gd~V~~kV~~vd~~~~~ 80 (94) T 2nn6_I 61 FRPGDIVLAKVISLGDAQSN 80 (94) T ss_dssp CCSSSEEEEEEEEEETTTTE T ss_pred CCCCCEEEEEEEEECCCCCE T ss_conf 67999999999986388973 No 30 >>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (R:1-87) Probab=22.08 E-value=54 Score=14.00 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=31.5 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-----CCEEEEEEE------CCCCCCEEEEECCCCCEEE Q ss_conf 7378998999999835887740123453543136666-----433886300------3561302899910786101 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI-----NKNFTVRKI------SYGEGMNRLFPLYSPMIQD 87 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~-----~stftvRki------~~g~GVE~~fpl~SP~i~~ 87 (141) .|+.||+|.| +.--+|++ +|.++++....- +-+..-+.+ ..|--+++-.|+|..++.- T Consensus 15 ~i~kGD~V~V---i~G~dkGk----~G~V~~V~~~~~~ViVegvN~~~~~~k~~~~~~~g~~~~~e~Pi~~SnV~l 83 (87) T 2zjr_R 15 HFKKGDTVIV---LSGKHKGQ----TGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVAL 83 (87) T ss_dssp SSCTTSEEEC---CSSSSTTC----EEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC T ss_pred EEECCCEEEE---EECCCCCC----EEEEEEEECCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEEHHHEEE T ss_conf 1208999999---25589996----168999988899999957489998605644478887377764088677788 No 31 >>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} (A:) Probab=20.89 E-value=30 Score=15.55 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=7.2 Q ss_pred CCCCCCEEEEEEE Q ss_conf 7378998999999 Q gi|254780715|r 23 KFSPGDTLCVKTI 35 (141) Q Consensus 23 ~f~~GD~v~V~~~ 35 (141) -+.+||.|.|..+ T Consensus 53 ~I~~GD~V~Ve~~ 65 (79) T 3i4o_A 53 RILPEDRVVVELS 65 (79) T ss_dssp CCCTTCEEEEEEE T ss_pred EECCCCEEEEEEC T ss_conf 9449999999967 No 32 >>1yz6_A Probable translation initiation factor 2 alpha subunit; beta barrel, helical domain and alpha beta domain; 3.37A {Pyrococcus abyssi} (A:1-83) Probab=20.75 E-value=57 Score=13.83 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=9.3 Q ss_pred CCCCCCCCCEEEEEEE Q ss_conf 9897378998999999 Q gi|254780715|r 20 SLPKFSPGDTLCVKTI 35 (141) Q Consensus 20 ~~P~f~~GD~v~V~~~ 35 (141) .+.++++|+++...+. T Consensus 4 ~~~~~~~G~~v~g~V~ 19 (83) T 1yz6_A 4 AREYPEEGEFVVATVK 19 (83) T ss_dssp CCSSCCTTCEEEEEEE T ss_pred CCCCCCCCCEEEEEEE T ss_conf 0127999999999999 Done!