HHSEARCH alignment of GI: 254780715 and SCOP domain: d1zq1a1

Alignment
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=90.17  E-value=0.22  Score=26.54  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHH
Q ss_conf             73789989999998358877401234535431366664338863003561302899910786101222000204
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKV   96 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkv   96 (141)
                      .+.+||.|+|...  .++-  -..|+|+++-.-..+-...++| |.-+|.  -.-|+  .-.|++||++.+++|
T Consensus        10 ~~~~GD~Vri~~~--~~~~--~~~~eGilmP~~e~s~~~~ivl-KL~nGY--NiGi~--~~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKE--EDGE--EVTYEGYIMPPYELSAGDTLVL-KLENGY--NIGIA--LEKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEE--SSSS--EEECCEEECCCCTTCCCSEEEE-EETTSC--EEEEE--GGGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEE--CCCC--CEEEEEEECCCCCCCCCCEEEE-EECCCE--EECCC--HHHEEEEEEEEECCC
T ss_conf             9999998999991--4888--5589999848854589987999-944862--24133--667048999764129


SCOP domain information

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]