HHSEARCH alignment of GI: 254780715 and SCOP domain: d2j01t1

Alignment
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=1.4e-45  Score=305.87  Aligned_cols=119  Identities=41%  Similarity=0.789  Sum_probs=111.1

Q ss_pred             CCH---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
Q ss_conf             935---89997999999760279897378998999999835887740123453543136666433886300356130289
Q gi|254780715|r    1 MNI---IDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRL   77 (141)
Q Consensus         1 Mnl---i~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~   77 (141)
                      ||.   |+.+|++++     +.++|+|++||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++
T Consensus         1 mn~~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~   75 (138)
T d2j01t1           1 MNRGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERI   75 (138)
T ss_dssp             CTTHHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred             CCHHHHHHHHHHHHH-----CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEE
T ss_conf             988999999999860-----145998389989999999758883578888899998717885307998898558448999


Q ss_pred             EECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCC
Q ss_conf             99107861012220002046787687508884102201200121236
Q gi|254780715|r   78 FPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKA  124 (141)
Q Consensus        78 fpl~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~~~~  124 (141)
                      ||||||+|++|+|+++|+|||||||||||+.||+|||+++.......
T Consensus        76 fpl~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~~~~~~  122 (138)
T d2j01t1          76 FPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRID  122 (138)
T ss_dssp             ECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHHHHH
T ss_pred             EECCCCCCCCEEEEECCCEEHHHEEEHHHCCCHHHHHHHHHCCCCCC
T ss_conf             86359986640776327153211341120513566554540022233


SCOP domain information

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]