Query         gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs    113 out of 921
Neff          4.8 
Searched_HMMs 13730
Date          Wed Jun  1 08:48:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780715.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2j01t1 b.34.5.6 (T:1-138) Rib 100.0 1.4E-45       0  305.9  -0.8  119    1-124     1-122 (138)
  2 d2gycn1 b.34.5.6 (N:1-114) Rib 100.0 1.4E-45       0  304.9  -6.0  112    2-118     2-113 (114)
  3 d2zjrm1 b.34.5.6 (M:2-109) Rib 100.0 1.1E-40   7E-45  274.6   4.8  100    1-106     9-108 (108)
  4 d1zq1a1 b.38.3.1 (A:2-75) Glut  90.2    0.22 1.6E-05   26.5   4.8   65   23-96     10-74  (74)
  5 d1nz9a_ b.34.5.4 (A:) N-utiliz  66.1     3.7 0.00027   18.8   4.1   36   23-65      4-39  (58)
  6 d1jb7a1 b.40.4.3 (A:36-204) Te  60.8     4.6 0.00033   18.3   3.8   50   18-74     72-122 (169)
  7 d1nppa2 b.34.5.4 (A:191-248) N  60.0     5.2 0.00038   17.9   4.2   37   22-65      3-39  (58)
  8 d1v29b_ b.34.4.4 (B:) Cobalt-c  58.9     2.9 0.00021   19.5   2.5   38   19-57    137-178 (229)
  9 d1vqot1 b.34.5.1 (T:1-119) Rib  57.5     5.7 0.00042   17.7   5.6   73   18-101    37-112 (119)
 10 d1iz6a1 b.34.5.2 (A:2-70) Euka  54.9     6.3 0.00046   17.4   5.0   60   20-90      7-67  (69)
 11 d1ugpb_ b.34.4.4 (B:) Cobalt-c  54.8     3.8 0.00027   18.8   2.5   37   19-56    134-174 (226)
 12 d2eifa1 b.34.5.2 (A:1-73) Euka  47.2     8.3 0.00061   16.6   5.3   56   20-81     11-66  (73)
 13 d2d6fa1 b.38.3.1 (A:2-73) Glut  45.9     8.7 0.00064   16.5   4.6   57   23-94     14-71  (72)
 14 d1bkba1 b.34.5.2 (A:4-74) Euka  44.5     9.2 0.00067   16.4   5.2   61   20-90     10-70  (71)
 15 d1qzga_ b.40.4.3 (A:) Protecti  34.9      13 0.00094   15.4   3.4   32   60-91     62-94  (170)
 16 d1xjva1 b.40.4.3 (A:6-145) Pro  33.1      14   0.001   15.2   2.7   39   18-64     61-100 (140)
 17 d2qdyb1 b.34.4.4 (B:1-211) Iro  31.6     8.8 0.00064   16.5   1.4   36   20-56    119-159 (211)
 18 d1hh2p1 b.40.4.5 (P:127-198) S  28.8      16  0.0012   14.8   2.7   21   18-38     38-60  (72)
 19 d2bi0a1 d.38.1.4 (A:8-185) Hyp  27.4      17  0.0012   14.7   2.2   16   23-38     95-110 (178)
 20 d2do3a1 b.34.5.5 (A:462-523) T  26.6      18  0.0013   14.5   3.3   28   23-57     10-37  (62)
 21 d2pu9b1 b.34.4.3 (B:1-73) Ferr  26.3      15  0.0011   15.0   1.9   42   24-65      1-53  (73)
 22 d1hr0w_ b.40.4.5 (W:) Translat  22.7      13 0.00092   15.5   0.9   22   23-44     46-67  (71)

No 1  
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=1.4e-45  Score=305.87  Aligned_cols=119  Identities=41%  Similarity=0.789  Sum_probs=111.1

Q ss_pred             CCH---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
Q ss_conf             935---89997999999760279897378998999999835887740123453543136666433886300356130289
Q gi|254780715|r    1 MNI---IDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRL   77 (141)
Q Consensus         1 Mnl---i~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~   77 (141)
                      ||.   |+.+|++++     +.++|+|++||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++
T Consensus         1 mn~~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~   75 (138)
T d2j01t1           1 MNRGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERI   75 (138)
T ss_dssp             CTTHHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred             CCHHHHHHHHHHHHH-----CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEE
T ss_conf             988999999999860-----145998389989999999758883578888899998717885307998898558448999


Q ss_pred             EECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCC
Q ss_conf             99107861012220002046787687508884102201200121236
Q gi|254780715|r   78 FPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKA  124 (141)
Q Consensus        78 fpl~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~~~~  124 (141)
                      ||||||+|++|+|+++|+|||||||||||+.||+|||+++.......
T Consensus        76 fpl~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~~~~~~  122 (138)
T d2j01t1          76 FPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRID  122 (138)
T ss_dssp             ECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHHHHH
T ss_pred             EECCCCCCCCEEEEECCCEEHHHEEEHHHCCCHHHHHHHHHCCCCCC
T ss_conf             86359986640776327153211341120513566554540022233


No 2  
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.4e-45  Score=304.88  Aligned_cols=112  Identities=55%  Similarity=0.917  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC
Q ss_conf             35899979999997602798973789989999998358877401234535431366664338863003561302899910
Q gi|254780715|r    2 NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY   81 (141)
Q Consensus         2 nli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~   81 (141)
                      |+|+.+|++|+     ++++|+|+|||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||||
T Consensus         2 nli~~ie~~q~-----k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~   76 (114)
T d2gycn1           2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH   76 (114)
T ss_dssp             CTTTSSSSSTT-----CCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCC
T ss_pred             HHHHHHHHHHH-----HCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEC
T ss_conf             28999999985-----2549984899899999998368741255778999999479840379999963786489999907


Q ss_pred             CCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHC
Q ss_conf             7861012220002046787687508884102201200
Q gi|254780715|r   82 SPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENT  118 (141)
Q Consensus        82 SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~  118 (141)
                      ||+|++|||+++|||||||||||||+.||+|||+++.
T Consensus        77 SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~  113 (114)
T d2gycn1          77 SPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL  113 (114)
T ss_dssp             SSCTTCCCCCCCSCCCCSCTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCEEEEECCCCEEHHHEEEECCCCCHHHHHHHHC
T ss_conf             9982426774158042011333004712677644531


No 3  
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=1.1e-40  Score=274.56  Aligned_cols=100  Identities=50%  Similarity=0.962  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             93589997999999760279897378998999999835887740123453543136666433886300356130289991
Q gi|254780715|r    1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL   80 (141)
Q Consensus         1 Mnli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl   80 (141)
                      |++|+.+|+++      .+++|+|+|||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++|||
T Consensus         9 ~~li~~ie~~~------~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl   82 (108)
T d2zjrm1           9 GELLRGIEQDH------TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   82 (108)
T ss_dssp             HHHHHHTTGGG------CCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHHH------CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEC
T ss_conf             99999999985------767998489989999999758986505788899999827886305998997368428999975


Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHCC
Q ss_conf             07861012220002046787687508
Q gi|254780715|r   81 YSPMIQDITVIRRGKVRRSKLYYLQD  106 (141)
Q Consensus        81 ~SP~i~~Iev~r~gkvRrakLyYLR~  106 (141)
                      |||+|++|||+++|||||||||||||
T Consensus        83 ~SP~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          83 ASPLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             TCTTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             CCCCCCEEEEEEECCEEEEEEEEECC
T ss_conf             89975679999814340001402149


No 4  
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=90.17  E-value=0.22  Score=26.54  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHH
Q ss_conf             73789989999998358877401234535431366664338863003561302899910786101222000204
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKV   96 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkv   96 (141)
                      .+.+||.|+|...  .++-  -..|+|+++-.-..+-...++| |.-+|.  -.-|+  .-.|++||++.+++|
T Consensus        10 ~~~~GD~Vri~~~--~~~~--~~~~eGilmP~~e~s~~~~ivl-KL~nGY--NiGi~--~~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKE--EDGE--EVTYEGYIMPPYELSAGDTLVL-KLENGY--NIGIA--LEKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEE--SSSS--EEECCEEECCCCTTCCCSEEEE-EETTSC--EEEEE--GGGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEE--CCCC--CEEEEEEECCCCCCCCCCEEEE-EECCCE--EECCC--HHHEEEEEEEEECCC
T ss_conf             9999998999991--4888--5589999848854589987999-944862--24133--667048999764129


No 5  
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=66.10  E-value=3.7  Score=18.85  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf             7378998999999835887740123453543136666433886
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTV   65 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftv   65 (141)
                      +|.+||.|+|    .+|   -.+-|+|.+..+....-..+..|
T Consensus         4 ~F~~Gd~V~I----~~G---pF~g~~g~V~~i~~~k~rv~V~v   39 (58)
T d1nz9a_           4 AFREGDQVRV----VSG---PFADFTGTVTEINPERGKVKVMV   39 (58)
T ss_dssp             SCCTTCEEEE----CSG---GGTTCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCEEEE----ECC---CCCCCEEEEEEECCCCCEEEEEE
T ss_conf             2069999999----005---89998899999928899999999


No 6  
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=60.82  E-value=4.6  Score=18.29  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             CCCCCCC-CCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             2798973-78998999999835887740123453543136666433886300356130
Q gi|254780715|r   18 KRSLPKF-SPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGM   74 (141)
Q Consensus        18 k~~~P~f-~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GV   74 (141)
                      ...+|.+ .+||+|.++-.       ++|.|.|-.....+.+-.++|.|=+-..+.+.
T Consensus        72 ~~~LP~V~~~GDII~l~rv-------~i~~~~g~~~~v~~~~~~SswavF~~~~~~~~  122 (169)
T d1jb7a1          72 FEDLPIIHRAGDIIRVHRA-------TLRLYNGQRQFNANVFYSSSWALFSTDKRSVT  122 (169)
T ss_dssp             GGGSCCCCEETCEEEEEEE-------EEEEETTEEEEEEETTTTCEEEEECSSSSCHH
T ss_pred             HHHCCCCCCCCCEEEEEEE-------EEEEECCCEEEEECCCCCEEEEEEECCCCCCC
T ss_conf             7788987898989999888-------99998792168872665236899707887766


No 7  
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=60.00  E-value=5.2  Score=17.92  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEE
Q ss_conf             97378998999999835887740123453543136666433886
Q gi|254780715|r   22 PKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTV   65 (141)
Q Consensus        22 P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftv   65 (141)
                      .+|.+||.|+|    ..|.   ..-|+|.+..+....-..+..|
T Consensus         3 vdf~~Gd~V~I----~~Gp---F~g~~g~V~~i~~~~~rv~V~v   39 (58)
T d1nppa2           3 VEFEKGDQVRV----IEGP---FMNFTGTVEEVHPEKRKLTVMI   39 (58)
T ss_dssp             CSCCTTCEEEE----CSST---TTTCEEEEEEEEGGGTEEEEEE
T ss_pred             CCCCCCCEEEE----CCCC---CCCCEEEEEEECCCCCEEEEEE
T ss_conf             55259999999----1268---9998999999828899999999


No 8  
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=58.87  E-value=2.9  Score=19.50  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECCC
Q ss_conf             79897378998999999835887740123----4535431366
Q gi|254780715|r   19 RSLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSGR   57 (141)
Q Consensus        19 ~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~~   57 (141)
                      ..-|.|.+||.|+|.- .....-+|+..|    .|++++..+.
T Consensus       137 ~~~p~F~vGd~Vrv~~-~~~~gHtRlP~Y~rg~~G~i~~~~g~  178 (229)
T d1v29b_         137 SSFPRFEVGERIKTRN-IHPTGHTRFPRYVRDKYGVIEEVYGA  178 (229)
T ss_dssp             CCCCSCCTTCEEEECC-CCCSSCCSCCGGGTTCEEEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEEE-CCCCCCCCCCHHHCCCEEEEEEEECC
T ss_conf             8899679999899805-78887212636566875599987368


No 9  
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=57.48  E-value=5.7  Score=17.66  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC---CCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECC
Q ss_conf             279897378998999999835887740123453543136666---43388630035613028999107861012220002
Q gi|254780715|r   18 KRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI---NKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRG   94 (141)
Q Consensus        18 k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~---~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~g   94 (141)
                      .+++ .++.||+|.|   +.-..|+    -+|.|+.+....-   =.-+++.+   ..|-+.-.|+|..++.=++.--..
T Consensus        37 ~r~~-~IkkGD~V~V---i~Gk~KG----k~GkV~~V~~k~~~V~Vegin~~k---~~~k~~~~pIh~SNv~i~~~~~~~  105 (119)
T d1vqot1          37 QRNV-RVNAGDTVEV---LRGDFAG----EEGEVINVDLDKAVIHVEDVTLEK---TDGEEVPRPLDTSNVRVTDLDLED  105 (119)
T ss_dssp             CSEE-ECCTTCEEEE---CSSTTTT----CEEEEEEEETTTTEEEETTCEEEC---TTSCEEECCBCGGGEEEEECCCCS
T ss_pred             CCCC-CEECCCEEEE---EECCCCC----CCCEEEEEECCCCEEEEECCEEEE---CCCCEEECCCCHHHEEEEECCCCC
T ss_conf             7435-1427999999---2547899----851499998779999996918996---278606145753897998476796


Q ss_pred             HHHHHHH
Q ss_conf             0467876
Q gi|254780715|r   95 KVRRSKL  101 (141)
Q Consensus        95 kvRrakL  101 (141)
                      +.|.++|
T Consensus       106 ~~R~~~l  112 (119)
T d1vqot1         106 EKREARL  112 (119)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
T ss_conf             0464444


No 10 
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=54.88  E-value=6.3  Score=17.39  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-CCEEEEEEECCCCCCEEEEECCCCCEEEEEE
Q ss_conf             9897378998999999835887740123453543136666-4338863003561302899910786101222
Q gi|254780715|r   20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI-NKNFTVRKISYGEGMNRLFPLYSPMIQDITV   90 (141)
Q Consensus        20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~-~stftvRki~~g~GVE~~fpl~SP~i~~Iev   90 (141)
                      +.-+++.|..+.+     +|...++.-|+=.--.++  |- -....++++..|--.|.+||..    ++|||
T Consensus         7 ~~~~lkkG~~i~~-----~g~p~~V~e~~~~kpGk~--G~a~~~~k~k~i~tG~~~e~~~~s~----d~vev   67 (69)
T d1iz6a1           7 QVSKLKPGRYIII-----DDEPCRIVNITVSSPGKH--GSAKARIEAVGIFDGKVRSIVKPTS----AEVDV   67 (69)
T ss_dssp             EGGGCCTTSEEEE-----TTEEEEEEEEEECCCCTT--SCCEEEEEEEETTTCCEEEEEEETT----SEEEE
T ss_pred             EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCC--CCCEEEEEEEECCCCCEEEEEECCC----CEEEC
T ss_conf             8768658889999-----999999999999769876--7538999999823598999998699----88862


No 11 
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=54.79  E-value=3.8  Score=18.81  Aligned_cols=37  Identities=27%  Similarity=0.493  Sum_probs=25.9

Q ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECC
Q ss_conf             79897378998999999835887740123----453543136
Q gi|254780715|r   19 RSLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG   56 (141)
Q Consensus        19 ~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~   56 (141)
                      ..-|.|.+||.|+|.-. ....-+|+..|    .|++++..+
T Consensus       134 ~~~p~F~vGd~Vrv~~~-~~~gHtR~P~Y~rg~~G~I~~~~g  174 (226)
T d1ugpb_         134 DRPPKFKEGDVVRFSTA-SPKGHARRARYVRGKTGTVVKHHG  174 (226)
T ss_dssp             SSCCSCCTTCEEEECCC-CCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred             CCCCCCCCCCEEEECCC-CCCCCEECCHHHCCCEEEEEEEEC
T ss_conf             88983589998897158-999812276666687558999744


No 12 
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=47.22  E-value=8.3  Score=16.63  Aligned_cols=56  Identities=11%  Similarity=0.037  Sum_probs=36.3

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC
Q ss_conf             98973789989999998358877401234535431366664338863003561302899910
Q gi|254780715|r   20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY   81 (141)
Q Consensus        20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~   81 (141)
                      +.-+++.|+.+..     +|...++--|+=.--+++++ --....++|+..|--.|.+||..
T Consensus        11 ~~~~lKkG~~i~~-----~g~p~~V~e~~~~kpGk~G~-A~~r~k~kni~tG~~~e~~~~s~   66 (73)
T d2eifa1          11 NVGSLKVGQYVMI-----DGVPCEIVDISVSKPGKHGG-AKARVVGIGIFEKVKKEFVAPTS   66 (73)
T ss_dssp             EGGGCCTTSEEEE-----TTEEEEEEEEEECCCCSSSC-CEEEEEEEESSSCCEEEEEEETT
T ss_pred             EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCCCC-EEEEEEEEEEECCCEEEEEECCC
T ss_conf             7999638889999-----99999999999987887630-79999998886395889998099


No 13 
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=45.93  E-value=8.7  Score=16.51  Aligned_cols=57  Identities=19%  Similarity=0.415  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEC-CCCCCEEEEECCCCCEEEEEEEECC
Q ss_conf             73789989999998358877401234535431366664338863003-5613028999107861012220002
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKIS-YGEGMNRLFPLYSPMIQDITVIRRG   94 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~-~g~GVE~~fpl~SP~i~~Iev~r~g   94 (141)
                      .+.+||.|+|..   ++     ..|+|+++-.--.+-...++|.=-. +++|+..    -  .| +||++.++
T Consensus        14 ~i~vGD~V~i~~---~~-----~~~eGilmP~~e~sd~~~iVlKL~nGYNiGi~~----~--~i-~ie~iek~   71 (72)
T d2d6fa1          14 SIDVGDMVLVEK---PD-----VTYEGMVLDRADDADDRHIVLKLENGYNIGVEI----S--DA-RIELLEKG   71 (72)
T ss_dssp             TCCTTCEEEEEC---SS-----CEEEEEECCCCTTSCSSEEEEECTTSCEEEEEC----T--TC-CCCEEECC
T ss_pred             CCCCCCEEEEEE---CC-----CEEEEEECCCCCCCCCCEEEEEECCCEEEEEEC----C--CC-EEEEEECC
T ss_conf             999998899997---99-----189999848744589998999924864472633----5--34-79997218


No 14 
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=44.53  E-value=9.2  Score=16.37  Aligned_cols=61  Identities=13%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEE
Q ss_conf             98973789989999998358877401234535431366664338863003561302899910786101222
Q gi|254780715|r   20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITV   90 (141)
Q Consensus        20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev   90 (141)
                      +.-+++.|+.+.+     +|...++--|+=.--.+++ +--....+|++..|--.|.+||..    +++||
T Consensus        10 ~a~~lKkG~~i~~-----~g~p~~V~~~~~~kpgk~G-~a~~r~k~k~i~tG~~~e~~~~s~----d~vev   70 (71)
T d1bkba1          10 EAGELKEGSYVVI-----DGEPCRVVEIEKSKTGKHG-SAKARIVAVGVFDGGKRTLSLPVD----AQVEV   70 (71)
T ss_dssp             EGGGCCTTCEEEE-----TTEEEEEEEEEEECCSTTS-CCEEEEEEEETTTCCEEEEEEETT----SEEEE
T ss_pred             EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCCC-CCEEEEEEEEEECCCEEEEEECCC----CEEEC
T ss_conf             8999528889999-----9999999888888899878-527999999841694899997499----88858


No 15 
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=34.88  E-value=13  Score=15.42  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=11.7

Q ss_pred             CCEEEEEEECC-CCCCEEEEECCCCCEEEEEEE
Q ss_conf             43388630035-613028999107861012220
Q gi|254780715|r   60 NKNFTVRKISY-GEGMNRLFPLYSPMIQDITVI   91 (141)
Q Consensus        60 ~stftvRki~~-g~GVE~~fpl~SP~i~~Iev~   91 (141)
                      -.||+|-.-+. .-++-....+|+|..+.+-.+
T Consensus        62 ~~tl~I~D~S~~~~~~gl~v~iF~~~~e~LP~V   94 (170)
T d1qzga_          62 VTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVI   94 (170)
T ss_dssp             EEEEEEECTTSCTTSCCEEEEEEESSSSCSCCC
T ss_pred             EEEEEEECCCCCCCCCCEEEEEECCCHHHCCCC
T ss_conf             999999769877777866999989996779986


No 16 
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.09  E-value=14  Score=15.24  Aligned_cols=39  Identities=23%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             CCCCCCC-CCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEE
Q ss_conf             2798973-7899899999983588774012345354313666643388
Q gi|254780715|r   18 KRSLPKF-SPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFT   64 (141)
Q Consensus        18 k~~~P~f-~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stft   64 (141)
                      ...+|.+ .+||+|.++-.       ++|.|.|-..+..+.+. ++|+
T Consensus        61 ~~~LP~v~~~GDII~l~r~-------~v~~~~~~~~~~~~~~~-ss~~  100 (140)
T d1xjva1          61 YEALPIIYKNGDIVRFHRL-------KIQVYKKETQGITSSGF-ASLT  100 (140)
T ss_dssp             GGGSCCCCSTTCEEEEEEE-------EEEEETTEEEEEEEEEE-EEEE
T ss_pred             HHHCCCCCCCCCEEEEEEE-------EEEEECCEEEEEECCCE-EEEE
T ss_conf             6789997898989999778-------99998895889964977-9999


No 17 
>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=31.59  E-value=8.8  Score=16.50  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEE-EECC
Q ss_conf             9897378998999999835887740123----45354-3136
Q gi|254780715|r   20 SLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCI-ARSG   56 (141)
Q Consensus        20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI-~~~~   56 (141)
                      .-|.|.+||.|+|.-. ....-+|+..|    .|+++ +..+
T Consensus       119 ~~p~F~vGd~Vrv~~~-~~~gHtRlP~Y~rgk~G~I~~~~~g  159 (211)
T d2qdyb1         119 ETTTFEVGQRVRVRDE-YVPGHIRMPAYCRGRVGTISHRTTE  159 (211)
T ss_dssp             SCCCCCTTCEEEECCC-CCSSCCSCCGGGTTCEEEEEEECSS
T ss_pred             CCCCCCCCCEEEECCC-CCCCCCCCCHHHCCCEEEEEEECCC
T ss_conf             8986799998997647-9987402526666986899862257


No 18 
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=28.84  E-value=16  Score=14.79  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=13.4

Q ss_pred             CCCCC--CCCCCCEEEEEEEEEC
Q ss_conf             27989--7378998999999835
Q gi|254780715|r   18 KRSLP--KFSPGDTLCVKTIITE   38 (141)
Q Consensus        18 k~~~P--~f~~GD~v~V~~~i~e   38 (141)
                      ...+|  .|++||.+++.+.-.+
T Consensus        38 ~eqip~E~~~~Gdrik~~i~~V~   60 (72)
T d1hh2p1          38 KEWIPGEEIKAGDLVKVYIIDVV   60 (72)
T ss_dssp             GGSCTTCCCCTTCEEEEEEEEEE
T ss_pred             HHCCCCCCCCCCCEEEEEEEEEE
T ss_conf             99598878999998999999998


No 19 
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.39  E-value=17  Score=14.73  Aligned_cols=16  Identities=31%  Similarity=0.299  Sum_probs=13.6

Q ss_pred             CCCCCCEEEEEEEEEC
Q ss_conf             7378998999999835
Q gi|254780715|r   23 KFSPGDTLCVKTIITE   38 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~e   38 (141)
                      ..++||||.+...|.+
T Consensus        95 PV~~GDTl~~~~eV~~  110 (178)
T d2bi0a1          95 FPAVGDTLYTRTEVVG  110 (178)
T ss_dssp             CCBTTCEEEEEEEEEE
T ss_pred             ECCCCCEEEEEEEEEE
T ss_conf             0148999799999999


No 20 
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.55  E-value=18  Score=14.54  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCC
Q ss_conf             73789989999998358877401234535431366
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGR   57 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~   57 (141)
                      .|++||-|+|    ..|   +.+--.|+|+...+.
T Consensus        10 ~F~~GDhVkV----i~G---~~~g~tGlVV~v~~~   37 (62)
T d2do3a1          10 YFKMGDHVKV----IAG---RFEGDTGLIVRVEEN   37 (62)
T ss_dssp             SCCTTCEEEE----SSS---TTTTCEEEEEEECSS
T ss_pred             CCCCCCEEEE----ECC---EECCCCEEEEEEECC
T ss_conf             1579985899----164---786962899999499


No 21 
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
Probab=26.26  E-value=15  Score=14.98  Aligned_cols=42  Identities=29%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CCCCCEEEEEEEEEC--CCCCCCEEE-----EEEEEEE----CCCCCCCEEEE
Q ss_conf             378998999999835--887740123-----4535431----36666433886
Q gi|254780715|r   24 FSPGDTLCVKTIITE--GDKSRIQAY-----EGVCIAR----SGRGINKNFTV   65 (141)
Q Consensus        24 f~~GD~v~V~~~i~e--g~k~R~Q~F-----~GvvI~~----~~~G~~stftv   65 (141)
                      .++||-|+|...+.=  ..+-|-|.|     +|.+.+.    +|+-++.|+-+
T Consensus         1 mkvGdrVrV~~sv~VyhhP~hr~~~~Dl~G~eGeV~~~v~~wkGr~ISanlP~   53 (73)
T d2pu9b1           1 MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPV   53 (73)
T ss_dssp             CCTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSEETTEECCCSSCE
T ss_pred             CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCCCE
T ss_conf             98899999800189984876579873567878788678740378595699769


No 22 
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=22.66  E-value=13  Score=15.49  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=12.6

Q ss_pred             CCCCCCEEEEEEEEECCCCCCC
Q ss_conf             7378998999999835887740
Q gi|254780715|r   23 KFSPGDTLCVKTIITEGDKSRI   44 (141)
Q Consensus        23 ~f~~GD~v~V~~~i~eg~k~R~   44 (141)
                      .+.+||.|.|.++-.+-+|.|+
T Consensus        46 ~i~~GD~V~Vel~pyd~~kgrI   67 (71)
T d1hr0w_          46 RILPGDRVVVEITPYDPTRGRI   67 (71)
T ss_dssp             CCCTTCEEEEECCTTCTTCCEE
T ss_pred             EECCCCEEEEEECCCCCCCEEE
T ss_conf             7359999999977667994879


Done!