Query gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 113 out of 921 Neff 4.8 Searched_HMMs 13730 Date Wed Jun 1 08:48:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780715.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2j01t1 b.34.5.6 (T:1-138) Rib 100.0 1.4E-45 0 305.9 -0.8 119 1-124 1-122 (138) 2 d2gycn1 b.34.5.6 (N:1-114) Rib 100.0 1.4E-45 0 304.9 -6.0 112 2-118 2-113 (114) 3 d2zjrm1 b.34.5.6 (M:2-109) Rib 100.0 1.1E-40 7E-45 274.6 4.8 100 1-106 9-108 (108) 4 d1zq1a1 b.38.3.1 (A:2-75) Glut 90.2 0.22 1.6E-05 26.5 4.8 65 23-96 10-74 (74) 5 d1nz9a_ b.34.5.4 (A:) N-utiliz 66.1 3.7 0.00027 18.8 4.1 36 23-65 4-39 (58) 6 d1jb7a1 b.40.4.3 (A:36-204) Te 60.8 4.6 0.00033 18.3 3.8 50 18-74 72-122 (169) 7 d1nppa2 b.34.5.4 (A:191-248) N 60.0 5.2 0.00038 17.9 4.2 37 22-65 3-39 (58) 8 d1v29b_ b.34.4.4 (B:) Cobalt-c 58.9 2.9 0.00021 19.5 2.5 38 19-57 137-178 (229) 9 d1vqot1 b.34.5.1 (T:1-119) Rib 57.5 5.7 0.00042 17.7 5.6 73 18-101 37-112 (119) 10 d1iz6a1 b.34.5.2 (A:2-70) Euka 54.9 6.3 0.00046 17.4 5.0 60 20-90 7-67 (69) 11 d1ugpb_ b.34.4.4 (B:) Cobalt-c 54.8 3.8 0.00027 18.8 2.5 37 19-56 134-174 (226) 12 d2eifa1 b.34.5.2 (A:1-73) Euka 47.2 8.3 0.00061 16.6 5.3 56 20-81 11-66 (73) 13 d2d6fa1 b.38.3.1 (A:2-73) Glut 45.9 8.7 0.00064 16.5 4.6 57 23-94 14-71 (72) 14 d1bkba1 b.34.5.2 (A:4-74) Euka 44.5 9.2 0.00067 16.4 5.2 61 20-90 10-70 (71) 15 d1qzga_ b.40.4.3 (A:) Protecti 34.9 13 0.00094 15.4 3.4 32 60-91 62-94 (170) 16 d1xjva1 b.40.4.3 (A:6-145) Pro 33.1 14 0.001 15.2 2.7 39 18-64 61-100 (140) 17 d2qdyb1 b.34.4.4 (B:1-211) Iro 31.6 8.8 0.00064 16.5 1.4 36 20-56 119-159 (211) 18 d1hh2p1 b.40.4.5 (P:127-198) S 28.8 16 0.0012 14.8 2.7 21 18-38 38-60 (72) 19 d2bi0a1 d.38.1.4 (A:8-185) Hyp 27.4 17 0.0012 14.7 2.2 16 23-38 95-110 (178) 20 d2do3a1 b.34.5.5 (A:462-523) T 26.6 18 0.0013 14.5 3.3 28 23-57 10-37 (62) 21 d2pu9b1 b.34.4.3 (B:1-73) Ferr 26.3 15 0.0011 15.0 1.9 42 24-65 1-53 (73) 22 d1hr0w_ b.40.4.5 (W:) Translat 22.7 13 0.00092 15.5 0.9 22 23-44 46-67 (71) No 1 >d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=1.4e-45 Score=305.87 Aligned_cols=119 Identities=41% Similarity=0.789 Sum_probs=111.1 Q ss_pred CCH---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE Q ss_conf 935---89997999999760279897378998999999835887740123453543136666433886300356130289 Q gi|254780715|r 1 MNI---IDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRL 77 (141) Q Consensus 1 Mnl---i~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~ 77 (141) ||. |+.+|++++ +.++|+|++||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++ T Consensus 1 mn~~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~ 75 (138) T d2j01t1 1 MNRGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERI 75 (138) T ss_dssp CTTHHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEE T ss_pred CCHHHHHHHHHHHHH-----CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEE T ss_conf 988999999999860-----145998389989999999758883578888899998717885307998898558448999 Q ss_pred EECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCC Q ss_conf 99107861012220002046787687508884102201200121236 Q gi|254780715|r 78 FPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKA 124 (141) Q Consensus 78 fpl~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~~~~ 124 (141) ||||||+|++|+|+++|+|||||||||||+.||+|||+++....... T Consensus 76 fpl~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~~~~~~ 122 (138) T d2j01t1 76 FPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRID 122 (138) T ss_dssp ECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHHHHH T ss_pred EECCCCCCCCEEEEECCCEEHHHEEEHHHCCCHHHHHHHHHCCCCCC T ss_conf 86359986640776327153211341120513566554540022233 No 2 >d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=1.4e-45 Score=304.88 Aligned_cols=112 Identities=55% Similarity=0.917 Sum_probs=109.2 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC Q ss_conf 35899979999997602798973789989999998358877401234535431366664338863003561302899910 Q gi|254780715|r 2 NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY 81 (141) Q Consensus 2 nli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~ 81 (141) |+|+.+|++|+ ++++|+|+|||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++|||| T Consensus 2 nli~~ie~~q~-----k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~ 76 (114) T d2gycn1 2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH 76 (114) T ss_dssp CTTTSSSSSTT-----CCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCC T ss_pred HHHHHHHHHHH-----HCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEC T ss_conf 28999999985-----2549984899899999998368741255778999999479840379999963786489999907 Q ss_pred CCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHC Q ss_conf 7861012220002046787687508884102201200 Q gi|254780715|r 82 SPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENT 118 (141) Q Consensus 82 SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~ 118 (141) ||+|++|||+++|||||||||||||+.||+|||+++. T Consensus 77 SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~ 113 (114) T d2gycn1 77 SPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113 (114) T ss_dssp SSCTTCCCCCCCSCCCCSCTTCCCCSSSCCCTTTTTC T ss_pred CCCCCEEEEECCCCEEHHHEEEECCCCCHHHHHHHHC T ss_conf 9982426774158042011333004712677644531 No 3 >d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Probab=100.00 E-value=1.1e-40 Score=274.56 Aligned_cols=100 Identities=50% Similarity=0.962 Sum_probs=94.2 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 93589997999999760279897378998999999835887740123453543136666433886300356130289991 Q gi|254780715|r 1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80 (141) Q Consensus 1 Mnli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl 80 (141) |++|+.+|+++ .+++|+|+|||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||| T Consensus 9 ~~li~~ie~~~------~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl 82 (108) T d2zjrm1 9 GELLRGIEQDH------TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 82 (108) T ss_dssp HHHHHHTTGGG------CCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET T ss_pred HHHHHHHHHHH------CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEC T ss_conf 99999999985------767998489989999999758986505788899999827886305998997368428999975 Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHCC Q ss_conf 07861012220002046787687508 Q gi|254780715|r 81 YSPMIQDITVIRRGKVRRSKLYYLQD 106 (141) Q Consensus 81 ~SP~i~~Iev~r~gkvRrakLyYLR~ 106 (141) |||+|++|||+++||||||||||||| T Consensus 83 ~SP~i~~IeV~r~~kvRRakLyYLRd 108 (108) T d2zjrm1 83 ASPLVNQVTIVERGKVRRAKLYYLRE 108 (108) T ss_dssp TCTTEEEEEEEECCCCSSSCCGGGCC T ss_pred CCCCCCEEEEEEECCEEEEEEEEECC T ss_conf 89975679999814340001402149 No 4 >d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} Probab=90.17 E-value=0.22 Score=26.54 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=39.2 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCHH Q ss_conf 73789989999998358877401234535431366664338863003561302899910786101222000204 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKV 96 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~gkv 96 (141) .+.+||.|+|... .++- -..|+|+++-.-..+-...++| |.-+|. -.-|+ .-.|++||++.+++| T Consensus 10 ~~~~GD~Vri~~~--~~~~--~~~~eGilmP~~e~s~~~~ivl-KL~nGY--NiGi~--~~~i~~ievlek~kv 74 (74) T d1zq1a1 10 NINVGDFVRITKE--EDGE--EVTYEGYIMPPYELSAGDTLVL-KLENGY--NIGIA--LEKIRRIEVLERAKV 74 (74) T ss_dssp TCCTTCEEEEEEE--SSSS--EEECCEEECCCCTTCCCSEEEE-EETTSC--EEEEE--GGGEEEEEEEECCCC T ss_pred CCCCCCEEEEEEE--CCCC--CEEEEEEECCCCCCCCCCEEEE-EECCCE--EECCC--HHHEEEEEEEEECCC T ss_conf 9999998999991--4888--5589999848854589987999-944862--24133--667048999764129 No 5 >d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=66.10 E-value=3.7 Score=18.85 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=23.8 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEE Q ss_conf 7378998999999835887740123453543136666433886 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTV 65 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftv 65 (141) +|.+||.|+| .+| -.+-|+|.+..+....-..+..| T Consensus 4 ~F~~Gd~V~I----~~G---pF~g~~g~V~~i~~~k~rv~V~v 39 (58) T d1nz9a_ 4 AFREGDQVRV----VSG---PFADFTGTVTEINPERGKVKVMV 39 (58) T ss_dssp SCCTTCEEEE----CSG---GGTTCEEEEEEEETTTTEEEEEE T ss_pred CCCCCCEEEE----ECC---CCCCCEEEEEEECCCCCEEEEEE T ss_conf 2069999999----005---89998899999928899999999 No 6 >d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Probab=60.82 E-value=4.6 Score=18.29 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=30.8 Q ss_pred CCCCCCC-CCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC Q ss_conf 2798973-78998999999835887740123453543136666433886300356130 Q gi|254780715|r 18 KRSLPKF-SPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGM 74 (141) Q Consensus 18 k~~~P~f-~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GV 74 (141) ...+|.+ .+||+|.++-. ++|.|.|-.....+.+-.++|.|=+-..+.+. T Consensus 72 ~~~LP~V~~~GDII~l~rv-------~i~~~~g~~~~v~~~~~~SswavF~~~~~~~~ 122 (169) T d1jb7a1 72 FEDLPIIHRAGDIIRVHRA-------TLRLYNGQRQFNANVFYSSSWALFSTDKRSVT 122 (169) T ss_dssp GGGSCCCCEETCEEEEEEE-------EEEEETTEEEEEEETTTTCEEEEECSSSSCHH T ss_pred HHHCCCCCCCCCEEEEEEE-------EEEEECCCEEEEECCCCCEEEEEEECCCCCCC T ss_conf 7788987898989999888-------99998792168872665236899707887766 No 7 >d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=60.00 E-value=5.2 Score=17.92 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=23.8 Q ss_pred CCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEE Q ss_conf 97378998999999835887740123453543136666433886 Q gi|254780715|r 22 PKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTV 65 (141) Q Consensus 22 P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftv 65 (141) .+|.+||.|+| ..|. ..-|+|.+..+....-..+..| T Consensus 3 vdf~~Gd~V~I----~~Gp---F~g~~g~V~~i~~~~~rv~V~v 39 (58) T d1nppa2 3 VEFEKGDQVRV----IEGP---FMNFTGTVEEVHPEKRKLTVMI 39 (58) T ss_dssp CSCCTTCEEEE----CSST---TTTCEEEEEEEEGGGTEEEEEE T ss_pred CCCCCCCEEEE----CCCC---CCCCEEEEEEECCCCCEEEEEE T ss_conf 55259999999----1268---9998999999828899999999 No 8 >d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]} Probab=58.87 E-value=2.9 Score=19.50 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=26.8 Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECCC Q ss_conf 79897378998999999835887740123----4535431366 Q gi|254780715|r 19 RSLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSGR 57 (141) Q Consensus 19 ~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~~ 57 (141) ..-|.|.+||.|+|.- .....-+|+..| .|++++..+. T Consensus 137 ~~~p~F~vGd~Vrv~~-~~~~gHtRlP~Y~rg~~G~i~~~~g~ 178 (229) T d1v29b_ 137 SSFPRFEVGERIKTRN-IHPTGHTRFPRYVRDKYGVIEEVYGA 178 (229) T ss_dssp CCCCSCCTTCEEEECC-CCCSSCCSCCGGGTTCEEEEEEEEEE T ss_pred CCCCCCCCCCEEEEEE-CCCCCCCCCCHHHCCCEEEEEEEECC T ss_conf 8899679999899805-78887212636566875599987368 No 9 >d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=57.48 E-value=5.7 Score=17.66 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=39.4 Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC---CCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECC Q ss_conf 279897378998999999835887740123453543136666---43388630035613028999107861012220002 Q gi|254780715|r 18 KRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI---NKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRG 94 (141) Q Consensus 18 k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~---~stftvRki~~g~GVE~~fpl~SP~i~~Iev~r~g 94 (141) .+++ .++.||+|.| +.-..|+ -+|.|+.+....- =.-+++.+ ..|-+.-.|+|..++.=++.--.. T Consensus 37 ~r~~-~IkkGD~V~V---i~Gk~KG----k~GkV~~V~~k~~~V~Vegin~~k---~~~k~~~~pIh~SNv~i~~~~~~~ 105 (119) T d1vqot1 37 QRNV-RVNAGDTVEV---LRGDFAG----EEGEVINVDLDKAVIHVEDVTLEK---TDGEEVPRPLDTSNVRVTDLDLED 105 (119) T ss_dssp CSEE-ECCTTCEEEE---CSSTTTT----CEEEEEEEETTTTEEEETTCEEEC---TTSCEEECCBCGGGEEEEECCCCS T ss_pred CCCC-CEECCCEEEE---EECCCCC----CCCEEEEEECCCCEEEEECCEEEE---CCCCEEECCCCHHHEEEEECCCCC T ss_conf 7435-1427999999---2547899----851499998779999996918996---278606145753897998476796 Q ss_pred HHHHHHH Q ss_conf 0467876 Q gi|254780715|r 95 KVRRSKL 101 (141) Q Consensus 95 kvRrakL 101 (141) +.|.++| T Consensus 106 ~~R~~~l 112 (119) T d1vqot1 106 EKREARL 112 (119) T ss_dssp HHHHHHH T ss_pred CHHHHHH T ss_conf 0464444 No 10 >d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=54.88 E-value=6.3 Score=17.39 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=36.1 Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-CCEEEEEEECCCCCCEEEEECCCCCEEEEEE Q ss_conf 9897378998999999835887740123453543136666-4338863003561302899910786101222 Q gi|254780715|r 20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGI-NKNFTVRKISYGEGMNRLFPLYSPMIQDITV 90 (141) Q Consensus 20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~-~stftvRki~~g~GVE~~fpl~SP~i~~Iev 90 (141) +.-+++.|..+.+ +|...++.-|+=.--.++ |- -....++++..|--.|.+||.. ++||| T Consensus 7 ~~~~lkkG~~i~~-----~g~p~~V~e~~~~kpGk~--G~a~~~~k~k~i~tG~~~e~~~~s~----d~vev 67 (69) T d1iz6a1 7 QVSKLKPGRYIII-----DDEPCRIVNITVSSPGKH--GSAKARIEAVGIFDGKVRSIVKPTS----AEVDV 67 (69) T ss_dssp EGGGCCTTSEEEE-----TTEEEEEEEEEECCCCTT--SCCEEEEEEEETTTCCEEEEEEETT----SEEEE T ss_pred EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCC--CCCEEEEEEEECCCCCEEEEEECCC----CEEEC T ss_conf 8768658889999-----999999999999769876--7538999999823598999998699----88862 No 11 >d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]} Probab=54.79 E-value=3.8 Score=18.81 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=25.9 Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEEEECC Q ss_conf 79897378998999999835887740123----453543136 Q gi|254780715|r 19 RSLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCIARSG 56 (141) Q Consensus 19 ~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI~~~~ 56 (141) ..-|.|.+||.|+|.-. ....-+|+..| .|++++..+ T Consensus 134 ~~~p~F~vGd~Vrv~~~-~~~gHtR~P~Y~rg~~G~I~~~~g 174 (226) T d1ugpb_ 134 DRPPKFKEGDVVRFSTA-SPKGHARRARYVRGKTGTVVKHHG 174 (226) T ss_dssp SSCCSCCTTCEEEECCC-CCSSCCCCCGGGTTCEEEEEEEEE T ss_pred CCCCCCCCCCEEEECCC-CCCCCEECCHHHCCCEEEEEEEEC T ss_conf 88983589998897158-999812276666687558999744 No 12 >d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=47.22 E-value=8.3 Score=16.63 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=36.3 Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC Q ss_conf 98973789989999998358877401234535431366664338863003561302899910 Q gi|254780715|r 20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY 81 (141) Q Consensus 20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~ 81 (141) +.-+++.|+.+.. +|...++--|+=.--+++++ --....++|+..|--.|.+||.. T Consensus 11 ~~~~lKkG~~i~~-----~g~p~~V~e~~~~kpGk~G~-A~~r~k~kni~tG~~~e~~~~s~ 66 (73) T d2eifa1 11 NVGSLKVGQYVMI-----DGVPCEIVDISVSKPGKHGG-AKARVVGIGIFEKVKKEFVAPTS 66 (73) T ss_dssp EGGGCCTTSEEEE-----TTEEEEEEEEEECCCCSSSC-CEEEEEEEESSSCCEEEEEEETT T ss_pred EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCCCC-EEEEEEEEEEECCCEEEEEECCC T ss_conf 7999638889999-----99999999999987887630-79999998886395889998099 No 13 >d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=45.93 E-value=8.7 Score=16.51 Aligned_cols=57 Identities=19% Similarity=0.415 Sum_probs=34.3 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEC-CCCCCEEEEECCCCCEEEEEEEECC Q ss_conf 73789989999998358877401234535431366664338863003-5613028999107861012220002 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKIS-YGEGMNRLFPLYSPMIQDITVIRRG 94 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~-~g~GVE~~fpl~SP~i~~Iev~r~g 94 (141) .+.+||.|+|.. ++ ..|+|+++-.--.+-...++|.=-. +++|+.. - .| +||++.++ T Consensus 14 ~i~vGD~V~i~~---~~-----~~~eGilmP~~e~sd~~~iVlKL~nGYNiGi~~----~--~i-~ie~iek~ 71 (72) T d2d6fa1 14 SIDVGDMVLVEK---PD-----VTYEGMVLDRADDADDRHIVLKLENGYNIGVEI----S--DA-RIELLEKG 71 (72) T ss_dssp TCCTTCEEEEEC---SS-----CEEEEEECCCCTTSCSSEEEEECTTSCEEEEEC----T--TC-CCCEEECC T ss_pred CCCCCCEEEEEE---CC-----CEEEEEECCCCCCCCCCEEEEEECCCEEEEEEC----C--CC-EEEEEECC T ss_conf 999998899997---99-----189999848744589998999924864472633----5--34-79997218 No 14 >d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=44.53 E-value=9.2 Score=16.37 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=37.2 Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEE Q ss_conf 98973789989999998358877401234535431366664338863003561302899910786101222 Q gi|254780715|r 20 SLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITV 90 (141) Q Consensus 20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~SP~i~~Iev 90 (141) +.-+++.|+.+.+ +|...++--|+=.--.+++ +--....+|++..|--.|.+||.. +++|| T Consensus 10 ~a~~lKkG~~i~~-----~g~p~~V~~~~~~kpgk~G-~a~~r~k~k~i~tG~~~e~~~~s~----d~vev 70 (71) T d1bkba1 10 EAGELKEGSYVVI-----DGEPCRVVEIEKSKTGKHG-SAKARIVAVGVFDGGKRTLSLPVD----AQVEV 70 (71) T ss_dssp EGGGCCTTCEEEE-----TTEEEEEEEEEEECCSTTS-CCEEEEEEEETTTCCEEEEEEETT----SEEEE T ss_pred EHHHCCCCCEEEE-----CCEEEEEEEEEEECCCCCC-CCEEEEEEEEEECCCEEEEEECCC----CEEEC T ss_conf 8999528889999-----9999999888888899878-527999999841694899997499----88858 No 15 >d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=34.88 E-value=13 Score=15.42 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=11.7 Q ss_pred CCEEEEEEECC-CCCCEEEEECCCCCEEEEEEE Q ss_conf 43388630035-613028999107861012220 Q gi|254780715|r 60 NKNFTVRKISY-GEGMNRLFPLYSPMIQDITVI 91 (141) Q Consensus 60 ~stftvRki~~-g~GVE~~fpl~SP~i~~Iev~ 91 (141) -.||+|-.-+. .-++-....+|+|..+.+-.+ T Consensus 62 ~~tl~I~D~S~~~~~~gl~v~iF~~~~e~LP~V 94 (170) T d1qzga_ 62 VTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVI 94 (170) T ss_dssp EEEEEEECTTSCTTSCCEEEEEEESSSSCSCCC T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCHHHCCCC T ss_conf 999999769877777866999989996779986 No 16 >d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.09 E-value=14 Score=15.24 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=22.1 Q ss_pred CCCCCCC-CCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEE Q ss_conf 2798973-7899899999983588774012345354313666643388 Q gi|254780715|r 18 KRSLPKF-SPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFT 64 (141) Q Consensus 18 k~~~P~f-~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stft 64 (141) ...+|.+ .+||+|.++-. ++|.|.|-..+..+.+. ++|+ T Consensus 61 ~~~LP~v~~~GDII~l~r~-------~v~~~~~~~~~~~~~~~-ss~~ 100 (140) T d1xjva1 61 YEALPIIYKNGDIVRFHRL-------KIQVYKKETQGITSSGF-ASLT 100 (140) T ss_dssp GGGSCCCCSTTCEEEEEEE-------EEEEETTEEEEEEEEEE-EEEE T ss_pred HHHCCCCCCCCCEEEEEEE-------EEEEECCEEEEEECCCE-EEEE T ss_conf 6789997898989999778-------99998895889964977-9999 No 17 >d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]} Probab=31.59 E-value=8.8 Score=16.50 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=23.3 Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEE----EEEEE-EECC Q ss_conf 9897378998999999835887740123----45354-3136 Q gi|254780715|r 20 SLPKFSPGDTLCVKTIITEGDKSRIQAY----EGVCI-ARSG 56 (141) Q Consensus 20 ~~P~f~~GD~v~V~~~i~eg~k~R~Q~F----~GvvI-~~~~ 56 (141) .-|.|.+||.|+|.-. ....-+|+..| .|+++ +..+ T Consensus 119 ~~p~F~vGd~Vrv~~~-~~~gHtRlP~Y~rgk~G~I~~~~~g 159 (211) T d2qdyb1 119 ETTTFEVGQRVRVRDE-YVPGHIRMPAYCRGRVGTISHRTTE 159 (211) T ss_dssp SCCCCCTTCEEEECCC-CCSSCCSCCGGGTTCEEEEEEECSS T ss_pred CCCCCCCCCEEEECCC-CCCCCCCCCHHHCCCEEEEEEECCC T ss_conf 8986799998997647-9987402526666986899862257 No 18 >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} Probab=28.84 E-value=16 Score=14.79 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=13.4 Q ss_pred CCCCC--CCCCCCEEEEEEEEEC Q ss_conf 27989--7378998999999835 Q gi|254780715|r 18 KRSLP--KFSPGDTLCVKTIITE 38 (141) Q Consensus 18 k~~~P--~f~~GD~v~V~~~i~e 38 (141) ...+| .|++||.+++.+.-.+ T Consensus 38 ~eqip~E~~~~Gdrik~~i~~V~ 60 (72) T d1hh2p1 38 KEWIPGEEIKAGDLVKVYIIDVV 60 (72) T ss_dssp GGSCTTCCCCTTCEEEEEEEEEE T ss_pred HHCCCCCCCCCCCEEEEEEEEEE T ss_conf 99598878999998999999998 No 19 >d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]} Probab=27.39 E-value=17 Score=14.73 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.6 Q ss_pred CCCCCCEEEEEEEEEC Q ss_conf 7378998999999835 Q gi|254780715|r 23 KFSPGDTLCVKTIITE 38 (141) Q Consensus 23 ~f~~GD~v~V~~~i~e 38 (141) ..++||||.+...|.+ T Consensus 95 PV~~GDTl~~~~eV~~ 110 (178) T d2bi0a1 95 FPAVGDTLYTRTEVVG 110 (178) T ss_dssp CCBTTCEEEEEEEEEE T ss_pred ECCCCCEEEEEEEEEE T ss_conf 0148999799999999 No 20 >d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.55 E-value=18 Score=14.54 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.1 Q ss_pred CCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCC Q ss_conf 73789989999998358877401234535431366 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGR 57 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~ 57 (141) .|++||-|+| ..| +.+--.|+|+...+. T Consensus 10 ~F~~GDhVkV----i~G---~~~g~tGlVV~v~~~ 37 (62) T d2do3a1 10 YFKMGDHVKV----IAG---RFEGDTGLIVRVEEN 37 (62) T ss_dssp SCCTTCEEEE----SSS---TTTTCEEEEEEECSS T ss_pred CCCCCCEEEE----ECC---EECCCCEEEEEEECC T ss_conf 1579985899----164---786962899999499 No 21 >d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]} Probab=26.26 E-value=15 Score=14.98 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=25.1 Q ss_pred CCCCCEEEEEEEEEC--CCCCCCEEE-----EEEEEEE----CCCCCCCEEEE Q ss_conf 378998999999835--887740123-----4535431----36666433886 Q gi|254780715|r 24 FSPGDTLCVKTIITE--GDKSRIQAY-----EGVCIAR----SGRGINKNFTV 65 (141) Q Consensus 24 f~~GD~v~V~~~i~e--g~k~R~Q~F-----~GvvI~~----~~~G~~stftv 65 (141) .++||-|+|...+.= ..+-|-|.| +|.+.+. +|+-++.|+-+ T Consensus 1 mkvGdrVrV~~sv~VyhhP~hr~~~~Dl~G~eGeV~~~v~~wkGr~ISanlP~ 53 (73) T d2pu9b1 1 MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPV 53 (73) T ss_dssp CCTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSEETTEECCCSSCE T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCCCE T ss_conf 98899999800189984876579873567878788678740378595699769 No 22 >d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Probab=22.66 E-value=13 Score=15.49 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=12.6 Q ss_pred CCCCCCEEEEEEEEECCCCCCC Q ss_conf 7378998999999835887740 Q gi|254780715|r 23 KFSPGDTLCVKTIITEGDKSRI 44 (141) Q Consensus 23 ~f~~GD~v~V~~~i~eg~k~R~ 44 (141) .+.+||.|.|.++-.+-+|.|+ T Consensus 46 ~i~~GD~V~Vel~pyd~~kgrI 67 (71) T d1hr0w_ 46 RILPGDRVVVEITPYDPTRGRI 67 (71) T ss_dssp CCCTTCEEEEECCTTCTTCCEE T ss_pred EECCCCEEEEEECCCCCCCEEE T ss_conf 7359999999977667994879 Done!