BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 141

 Score =  288 bits (736), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60
           MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN
Sbjct: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60

Query: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120
           KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK
Sbjct: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120

Query: 121 RAKALNEEVRRAALPEKEMSK 141
           RAKALNEEVRRAALPEKEMSK
Sbjct: 121 RAKALNEEVRRAALPEKEMSK 141


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 22.7 bits (47), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 37  TEGDKSRIQAYEGVCIARSGRGI 59
           +EG+KS   + EG+ + + GR +
Sbjct: 796 SEGNKSIPLSVEGIVVGKDGRSV 818


>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 410

 Score = 21.6 bits (44), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 82  SPMIQDITVIRRGKVRRSKLYYLQDLRGKAARI 114
           + M++D+  + + ++   K + + D+R    RI
Sbjct: 270 TAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRI 302


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.136    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,137
Number of Sequences: 1233
Number of extensions: 3276
Number of successful extensions: 5
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 328,796
effective HSP length: 66
effective length of query: 75
effective length of database: 247,418
effective search space: 18556350
effective search space used: 18556350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)