BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62] (141 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780715|ref|YP_003065128.1| 50S ribosomal protein L19 [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 288 bits (736), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 141/141 (100%), Positives = 141/141 (100%) Query: 1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN Sbjct: 1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60 Query: 61 KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120 KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK Sbjct: 61 KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120 Query: 121 RAKALNEEVRRAALPEKEMSK 141 RAKALNEEVRRAALPEKEMSK Sbjct: 121 RAKALNEEVRRAALPEKEMSK 141 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 22.7 bits (47), Expect = 2.6, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 15/23 (65%) Query: 37 TEGDKSRIQAYEGVCIARSGRGI 59 +EG+KS + EG+ + + GR + Sbjct: 796 SEGNKSIPLSVEGIVVGKDGRSV 818 >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 21.6 bits (44), Expect = 5.6, Method: Compositional matrix adjust. Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 82 SPMIQDITVIRRGKVRRSKLYYLQDLRGKAARI 114 + M++D+ + + ++ K + + D+R RI Sbjct: 270 TAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRI 302 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.377 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,137 Number of Sequences: 1233 Number of extensions: 3276 Number of successful extensions: 5 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 4 length of query: 141 length of database: 328,796 effective HSP length: 66 effective length of query: 75 effective length of database: 247,418 effective search space: 18556350 effective search space used: 18556350 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 34 (17.7 bits)