HHsearch alignment for GI: 254780716 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=95.76 E-value=0.082 Score=32.92 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=64.3
Q ss_pred EEEEE-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHHHH
Q ss_conf 56981-57111688999997898599973998999999971221127840328989998605778899997699069999
Q gi|254780716|r 6 IGIIG-LGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQ 84 (475)
Q Consensus 6 IGiIG-LG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v~~ 84 (475)
T Consensus 3 ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v--~gDl~dpesl~~Al~GvdaVi~~~~~~----- 75 (319)
T CHL00194 3 LLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELV--YGDLSLPETIPPALEGITAIIDASTSR----- 75 (319)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEE--EECCCCHHHHHHHHCCCCEEEEECCCC-----
T ss_conf 9998998589999999999688908999578676323421596799--942788778999965996799945667-----
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-EECCCCCCC
Q ss_conf 999997207899899967986578999999999847994-306754676
Q gi|254780716|r 85 LIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIY-FIGIGVSGG 132 (475)
Q Consensus 85 vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~-fid~pVSGG 132 (475)
T Consensus 76 ----------~~~~-~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga 113 (319)
T CHL00194 76 ----------PSDL-NNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNA 113 (319)
T ss_pred ----------CCCC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf ----------7886-2088988988999999999849988999613566