HHsearch alignment for GI: 254780716 and conserved domain: COG2344

>COG2344 AT-rich DNA-binding protein [General function prediction only].

Probab=96.25  E-value=0.016  Score=38.16  Aligned_cols=81  Identities=20%  Similarity=0.337  Sum_probs=54.2

Q ss_pred             CEEEEEECCHHHHHHHHH-HH-HCCCEE-EEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHH
Q ss_conf             805698157111688999-99-789859-997399899999997122112784032898999860577889999769906
Q gi|254780716|r    4 ADIGIIGLGSMGSNLSLN-IL-DKGFRL-AVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGD   80 (475)
Q Consensus         4 ~~IGiIGLG~MG~~mA~n-L~-~~G~~V-~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~   80 (475)
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~-----v~V~~~d~le~~v~~~-dv~iaiLtVPa~-  157 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD-----VPVYDLDDLEKFVKKN-DVEIAILTVPAE-  157 (211)
T ss_pred             EEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCC-----EEEECHHHHHHHHHHC-CCCEEEEECCHH-
T ss_conf             348999057088898607423326935999961787883752488-----1455268888898861-761899973489-


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999972
Q gi|254780716|r   81 PVDQLIDKLKP   91 (475)
Q Consensus        81 ~v~~vi~~l~~   91 (475)
T Consensus       158 ~AQ~vad~Lv~  168 (211)
T COG2344         158 HAQEVADRLVK  168 (211)
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999998