HHsearch alignment for GI: 254780716 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=97.08 E-value=0.0096 Score=39.79 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=65.7
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCHHH
Q ss_conf 805698157111688999997898599973998999999971221127840328989998605778899997--699069
Q gi|254780716|r 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDGDP 81 (475)
Q Consensus 4 ~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g~~ 81 (475)
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~g~~~-------~~~~~~--~~~~~~~iV~SPGIp~~~p 80 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAKAAAAGIAT-------ADLRTA--DWSQFAALVLSPGVPLTHP 80 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCC-------CCCCCC--CCCCCCEEEECCCCCCCCC
T ss_conf 9899994369999999999978997999939920668998759831-------455412--3203878999998886566
Q ss_pred -----HHHHHH---------HHH-----HCCCCCCEE-EECCCCCHHHHHHHHHHHHHCCCCEECCC
Q ss_conf -----999999---------997-----207899899-96798657899999999984799430675
Q gi|254780716|r 82 -----VDQLID---------KLK-----PLLSPEDIL-LDGGNSHFCDTQIRSLQLSEKGIYFIGIG 128 (475)
Q Consensus 82 -----v~~vi~---------~l~-----~~l~~g~ii-ID~sts~~~~t~~~~~~l~~kgi~fid~p 128 (475)
T Consensus 81 ~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gG 147 (457)
T PRK01390 81 KPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGG 147 (457)
T ss_pred CCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 7319999999859918600899999987325789889992899649899999999997399869966