HHsearch alignment for GI: 254780716 and conserved domain: PRK03803
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.48 E-value=0.093 Score=32.50 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=67.4
Q ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCHH-
Q ss_conf 5698157111688999997898599973998--999999971221127840328989998605778899997--69906-
Q gi|254780716|r 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDF--ELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDGD- 80 (475)
Q Consensus 6 IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~--~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g~- 80 (475)
T Consensus 10 ~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~~~~~~i--~~~~g~~~~~~---~~~~d~vv~SPgI~~~~p 84 (448)
T PRK03803 10 RIVVGLGKSGMSLVRFLARQGYQFAVTDTRENPPELATLRRDYPQV--EVRCGELDAEF---LCQAEEIIVSPGLALATP 84 (448)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCC--EEEECCCCHHH---HCCCCEEEECCCCCCCCH
T ss_conf 8999989999999999997889599991899916799999747997--79978889778---078999998997299999
Q ss_pred HHHHHHH---------HHHHCCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf 9999999---------997207899899967986578-999999999847994306754676
Q gi|254780716|r 81 PVDQLID---------KLKPLLSPEDILLDGGNSHFC-DTQIRSLQLSEKGIYFIGIGVSGG 132 (475)
Q Consensus 81 ~v~~vi~---------~l~~~l~~g~iiID~sts~~~-~t~~~~~~l~~kgi~fid~pVSGG 132 (475)
T Consensus 85 ~~~~a~~~~i~i~~e~el~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNiG~ 146 (448)
T PRK03803 85 ALQAAAAAGIKISGDIELFARAAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGNLGT 146 (448)
T ss_pred HHHHHHHCCCCEECHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999985996831999986217898899858998388999999999865983799403276