HHsearch alignment for GI: 254780716 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.91 E-value=0.17 Score=30.50 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=63.6
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEE--CCCH
Q ss_conf 8056981571116889999978985999739989--99999971221127840328989998605778899997--6990
Q gi|254780716|r 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFE--LTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMM--VTDG 79 (475)
Q Consensus 4 ~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~--~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~--vp~g 79 (475)
T Consensus 7 k~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~~~~~~~~l~-~~~~---~~~g~~~-~~~---~~~~d~vV~SPGI~~~ 78 (438)
T PRK03806 7 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-ENVE---RHTGSLN-DEW---LLAADLIVASPGIALA 78 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-CCCC---EEECCCC-HHH---HCCCCEEEECCCCCCC
T ss_conf 989999457888999999997899699998999900578864-5884---6657779-668---0679999989978998
Q ss_pred HH-HHHHHH---------HHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 69-999999---------99720789989996-798657899999999984799430
Q gi|254780716|r 80 DP-VDQLID---------KLKPLLSPEDILLD-GGNSHFCDTQIRSLQLSEKGIYFI 125 (475)
Q Consensus 80 ~~-v~~vi~---------~l~~~l~~g~iiID-~sts~~~~t~~~~~~l~~kgi~fi 125 (475)
T Consensus 79 ~p~~~~a~~~~i~i~seiel~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~ 135 (438)
T PRK03806 79 HPSLSAAADAGVEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG 135 (438)
T ss_pred CHHHHHHHHCCCCEEEHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 989999998799477699997222799889994899848999999999986599756