HHsearch alignment for GI: 254780716 and conserved domain: PRK07680
>PRK07680 late competence protein ComER; Validated.
Probab=99.22 E-value=1.2e-07 Score=75.79 Aligned_cols=257 Identities=19% Similarity=0.205 Sum_probs=142.1
Q ss_pred EEEEEECCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHH
Q ss_conf 05698157111688999997898----59997399899999997122112784032898999860577889999769906
Q gi|254780716|r 5 DIGIIGLGSMGSNLSLNILDKGF----RLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGD 80 (475)
Q Consensus 5 ~IGiIGLG~MG~~mA~nL~~~G~----~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~ 80 (475)
T Consensus 2 kI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~----~i~~~~~~~~~~~~~---dvIiLaVKP-q 73 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYP----SIHVAKTIEEVIEQS---ELIFICVKP-L 73 (273)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCC----CEEEECCHHHHHHCC---CEEEEECCH-H
T ss_conf 89998769999999999997799894569998899899999998769----908868889998409---989996488-8
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEE---ECCHHHHHHHHH
Q ss_conf 999999999720789989996798-6578999999999847994306754676000356843788---454899988899
Q gi|254780716|r 81 PVDQLIDKLKPLLSPEDILLDGGN-SHFCDTQIRSLQLSEKGIYFIGIGVSGGVKGARSGASLMV---GGNEKAYNRVEN 156 (475)
Q Consensus 81 ~v~~vi~~l~~~l~~g~iiID~st-s~~~~t~~~~~~l~~kgi~fid~pVSGG~~gA~~G~slMv---GG~~~~~~~~~p 156 (475)
T Consensus 74 ~~~~vl~~i~~~~~~~~~iISi~AGisi~---~l~~~~~~~vvR~M--PN--~~~~~~~G~t~~~~~~~~~~~~~~~v~~ 146 (273)
T PRK07680 74 DIYPLLKKLAPHFSDEKCLVSITSPISPE---QLETLVPCQVARII--PS--ITNRALSGASLVTFGNNCSEEWQQKLLR 146 (273)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHH---HHHHHCCCCCEEEE--CC--CCHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89999999886347884899955888899---99974799815886--78--8602143327997589999999999999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 999875015678618985698746789887767878--889998999999996428997899999986068844307999
Q gi|254780716|r 157 ILLSISAKYQNSPCCALLGPDGSGHFVKMIHNGIEY--ANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIK 234 (475)
Q Consensus 157 iL~~iaak~~~~~cv~y~G~~GsGh~vKMVhNgIey--~~mq~iaE~~~~l~~~~~~~~~~i~~vf~~w~~~~~~syLl~ 234 (475)
T Consensus 147 lf~~~G~~-------~~i~E~~~d~~talsGSGPAy~~~~~eal~~a~--v~~-~Gl~~~~A~~l~~~---------t~~ 207 (273)
T PRK07680 147 LFKNISTP-------LVIEEDITRVASDIVSCGPAFFSYLLQRFINAA--VDK-TNITKEEATTLVTE---------MVV 207 (273)
T ss_pred HHHHCCEE-------EEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHH-CCCCHHHHHHHHHH---------HHH
T ss_conf 99738779-------998578876788861684899999999999999--998-59999999999999---------999
Q ss_pred HHHHHHHHCCCCCCCCCHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999740567999520010233-365871677898877517888514677788877500577999875
Q gi|254780716|r 235 ITAEILSSSDTITGMPIIDVICDK-ASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQS 303 (475)
Q Consensus 235 i~~~il~~k~~~~g~~lid~i~d~-~~~kgTg~Wt~~~a~~lgvp~p~i~~av~aR~~S~~k~~R~~~~~ 303 (475)
T Consensus 208 G~a~ll~~~----~~~-~~~L~~~V~SPgGt-T~~gl~~Le~~--~~~~f~~a~~~a~~r~~e~~~~~~~ 269 (273)
T PRK07680 208 GLGKLLEKG----LYT-LPTLQEKVCVKGGV-TGEGIRVLEEH--VGDMFHKLFERTHEKFDEDLEKVKQ 269 (273)
T ss_pred HHHHHHHCC----CCC-HHHHHHCCCCCCHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999827----989-89999807899725-99999999972--5999999999999999999999999