HHsearch alignment for GI: 254780716 and conserved domain: PRK08642

Probab=90.68  E-value=1.4  Score=23.82  Aligned_cols=79  Identities=18%  Similarity=0.368  Sum_probs=51.1

Q ss_pred             EEEEEC-CHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHHH
Q ss_conf             569815-71116889999978985999-7399899999997122112784032898999860577889999769906999
Q gi|254780716|r    6 IGIIGL-GSMGSNLSLNILDKGFRLAV-YNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVD   83 (475)
Q Consensus         6 IGiIGL-G~MG~~mA~nL~~~G~~V~v-ydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v~   83 (475)
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~g~---~~~----------------~~~~Dv~~~~~~~   69 (254)
T PRK08642          9 VLVTGGSRGLGAAIARAFAREGARVVVNYHRSEDAAEALADELGD---RAI----------------AIQADVTDRNQVD   69 (254)
T ss_pred             EEEECHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC---CEE----------------EEEECCCCHHHHH
T ss_conf             999781119999999999987999999618988999999998199---469----------------9980699999999


Q ss_pred             HHHHHHHHCCC-CCCEEEECC
Q ss_conf             99999972078-998999679
Q gi|254780716|r   84 QLIDKLKPLLS-PEDILLDGG  103 (475)
Q Consensus        84 ~vi~~l~~~l~-~g~iiID~s  103 (475)
T Consensus        70 ~~v~~~~~~~G~~idilVnnA   90 (254)
T PRK08642         70 AMFATATEHFGKPITTVVNNA   90 (254)
T ss_pred             HHHHHHHHHHCCCCEEEEECC
T ss_conf             999999999499776998676