HHsearch alignment for GI: 254780716 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=98.52 E-value=7.5e-05 Score=55.33 Aligned_cols=193 Identities=11% Similarity=0.139 Sum_probs=120.0
Q ss_pred CEEEEEECCHHHHHHHH-HHHHCCCEEEEEECCHHHHHHHHHHCCC------------------CCCCCEECCCHHHHHH
Q ss_conf 80569815711168899-9997898599973998999999971221------------------1278403289899986
Q gi|254780716|r 4 ADIGIIGLGSMGSNLSL-NILDKGFRLAVYNKDFELTDVFIKKISG------------------LSQKVIVTKNLEQMVE 64 (475)
Q Consensus 4 ~~IGiIGLG~MG~~mA~-nL~~~G~~V~vydr~~~~~~~l~~~~~~------------------~~~~~~~~~s~~e~v~ 64 (475)
T Consensus 310 ~kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~---- 385 (706)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYR---- 385 (706)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHH----
T ss_conf 6799986473238999999998698799997999999999998899999998618999899999862241004412----
Q ss_pred HCCCCCEEEEECCCHHHHHH-HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH--H--CCCCEECC-CCCCCCCCCCC
Q ss_conf 05778899997699069999-9999972078998999679865789999999998--4--79943067-54676000356
Q gi|254780716|r 65 AVCKPRKILMMVTDGDPVDQ-LIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLS--E--KGIYFIGI-GVSGGVKGARS 138 (475)
Q Consensus 65 ~l~~pr~Iil~vp~g~~v~~-vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~--~--kgi~fid~-pVSGG~~gA~~ 138 (475)
T Consensus 386 ~~~~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~--la~~~~rP~r~iG~HFfnP~~~m~LVE---- 459 (706)
T PRK11154 386 GFKHADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQ--IAAAAARPEQVIGLHYFSPVEKMPLVE---- 459 (706)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH--HHHHCCCCCEEEEEEECCCCCCCCEEE----
T ss_conf 31568879997145288899999999964798858950676776899--998647841045544257744264279----
Q ss_pred CCEEEEE--CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 8437884--54899988899999875015678618985698746789887767878889998999999996428997899
Q gi|254780716|r 139 GASLMVG--GNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEI 216 (475)
Q Consensus 139 G~slMvG--G~~~~~~~~~piL~~iaak~~~~~cv~y~G~~GsGh~vKMVhNgIey~~mq~iaE~~~~l~~~~~~~~~~i 216 (475)
T Consensus 460 ---Vi~g~~Ts~et~~~~~~~~~~lgK~------pv~v~d-~pGFi----~NRi---l~~~~~ea~~l~~eG--~~~~~I 520 (706)
T PRK11154 460 ---VIPHAKTSAETIATTVALAKKQGKT------PIVVKD-GAGFY----VNRI---LAPYMNEAARLLLEG--EPIEHI 520 (706)
T ss_pred ---EECCCCCCHHHHHHHHHHHHHCCCE------EEEECC-CCCCH----HHHH---HHHHHHHHHHHHHCC--CCHHHH
T ss_conf ---9437898389999999999975987------899632-37417----9999---999999999999769--999999
Q ss_pred HHHHHHCCC
Q ss_conf 999986068
Q gi|254780716|r 217 SHLFSKWDT 225 (475)
Q Consensus 217 ~~vf~~w~~ 225 (475)
T Consensus 521 D~a~~~~G~ 529 (706)
T PRK11154 521 DAALVKFGF 529 (706)
T ss_pred HHHHHHCCC
T ss_conf 999997599