HHsearch alignment for GI: 254780716 and conserved domain: TIGR00873
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=96.80 E-value=0.0024 Score=44.16 Aligned_cols=124 Identities=14% Similarity=0.253 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH---HHHHCCCEEEHHHHHHHHHHHHHC-CC-CCCCCCCHH
Q ss_conf 9999999999999999999999996110145667988999---985189468537899999998708-88-520007989
Q gi|254780716|r 320 VKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIA---RIWRAGCIIRSQILNDIVKSLTED-PS-STNLLNIPS 394 (475)
Q Consensus 320 i~~L~~a~~~~~i~syaQGf~ll~~as~~y~w~l~l~~ia---~iW~~GCIIrs~lL~~i~~~~~~~-~~-l~~Ll~~~~ 394 (475)
T Consensus 183 VKMVHNGIEYGDMQLI~EAY~~lK~~-----L~L~~~~i~~vF~~WN~-g~L~SYLIeIT~~IL~~kD~~TG~pL--vd~ 254 (480)
T TIGR00873 183 VKMVHNGIEYGDMQLIAEAYDILKEG-----LGLSNEEIAEVFTEWNN-GELDSYLIEITADILAKKDEDTGKPL--VDK 254 (480)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCE--EHH
T ss_conf 53257671177798999999999865-----18888899999855237-77642688999998621350027512--311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHH-HCCCCCHHHHHHHHHHCCC-CCEEEE
Q ss_conf 999999524769999999998399847999999-99986-2178875899998761045-732242
Q gi|254780716|r 395 ISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL-SYFDT-FIHDRGTANLIQAQRDFFG-SHGFDR 457 (475)
Q Consensus 395 ~~~~i~~~~~~lr~vv~~~i~~gip~P~lsssL-~y~~~-~~~~~~~~nliqaqRD~FG-aH~~~r 457 (475)
T Consensus 255 ILD~AgQKGTG-kWT~~~ALd~G~P~tlI~EsVfAR~lSs~K~~R-----~~A~~~l~g~p~~~~~ 314 (480)
T TIGR00873 255 ILDTAGQKGTG-KWTAIDALDLGVPLTLITESVFARYLSSLKEER-----VAASKLLSGDPLAEEK 314 (480)
T ss_pred EECCCCCCCCC-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCCCC
T ss_conf 00334688674-157667653389820799999999884128999-----9999734889656778