HHsearch alignment for GI: 254780716 and conserved domain: TIGR02279

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=97.52  E-value=0.00023  Score=51.74  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=88.9

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------HCC-------CCCCCCEECCCHHHHHH
Q ss_conf             880569815711168899999789859997399899999997-----------122-------11278403289899986
Q gi|254780716|r    3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIK-----------KIS-------GLSQKVIVTKNLEQMVE   64 (475)
Q Consensus         3 k~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~-----------~~~-------~~~~~~~~~~s~~e~v~   64 (475)
T Consensus         5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~eA~a~a~agIe~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~l~alAd   84 (508)
T TIGR02279         5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAEALARAVAGIEKRLKSLVEKGKLTAEEAERTLKRLVPVTDLEALAD   84 (508)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             10689964685210389999825984887228889999999999999888752377778888888731787789999860


Q ss_pred             HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH---CCCCEECC-CCCCCCCCCCCCC
Q ss_conf             0577889999769906999999999720789989996798657899999999984---79943067-5467600035684
Q gi|254780716|r   65 AVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSE---KGIYFIGI-GVSGGVKGARSGA  140 (475)
Q Consensus        65 ~l~~pr~Iil~vp~g~~v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~---kgi~fid~-pVSGG~~gA~~G~  140 (475)
T Consensus        85 A----gLvIEAivE~L~VK~aLFaqLe~lc~ad~iiasNTSSlSIta~AAglarP~rvaGlHFFNPAP~MaLV-------  153 (508)
T TIGR02279        85 A----GLVIEAIVENLEVKKALFAQLEELCTADAIIASNTSSLSITALAAGLARPERVAGLHFFNPAPVMALV-------  153 (508)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE-------
T ss_conf             2----73224677406777999998986367015256232577799999731387707511134865536215-------


Q ss_pred             EEEEEC---CHHHHHHHHHHHHHHHC
Q ss_conf             378845---48999888999998750
Q gi|254780716|r  141 SLMVGG---NEKAYNRVENILLSISA  163 (475)
Q Consensus       141 slMvGG---~~~~~~~~~piL~~iaa  163 (475)
T Consensus       154 -EVVSGLaT~~eVae~ly~~a~aWGK  178 (508)
T TIGR02279       154 -EVVSGLATEAEVAEQLYETARAWGK  178 (508)
T ss_pred             -EEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             -6623635428999999999873288