HHsearch alignment for GI: 254780716 and conserved domain: TIGR02279
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=97.52 E-value=0.00023 Score=51.74 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------HCC-------CCCCCCEECCCHHHHHH
Q ss_conf 880569815711168899999789859997399899999997-----------122-------11278403289899986
Q gi|254780716|r 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIK-----------KIS-------GLSQKVIVTKNLEQMVE 64 (475)
Q Consensus 3 k~~IGiIGLG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~-----------~~~-------~~~~~~~~~~s~~e~v~ 64 (475)
T Consensus 5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~eA~a~a~agIe~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~l~alAd 84 (508)
T TIGR02279 5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAEALARAVAGIEKRLKSLVEKGKLTAEEAERTLKRLVPVTDLEALAD 84 (508)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 10689964685210389999825984887228889999999999999888752377778888888731787789999860
Q ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH---CCCCEECC-CCCCCCCCCCCCC
Q ss_conf 0577889999769906999999999720789989996798657899999999984---79943067-5467600035684
Q gi|254780716|r 65 AVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSE---KGIYFIGI-GVSGGVKGARSGA 140 (475)
Q Consensus 65 ~l~~pr~Iil~vp~g~~v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~---kgi~fid~-pVSGG~~gA~~G~ 140 (475)
T Consensus 85 A----gLvIEAivE~L~VK~aLFaqLe~lc~ad~iiasNTSSlSIta~AAglarP~rvaGlHFFNPAP~MaLV------- 153 (508)
T TIGR02279 85 A----GLVIEAIVENLEVKKALFAQLEELCTADAIIASNTSSLSITALAAGLARPERVAGLHFFNPAPVMALV------- 153 (508)
T ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE-------
T ss_conf 2----73224677406777999998986367015256232577799999731387707511134865536215-------
Q ss_pred EEEEEC---CHHHHHHHHHHHHHHHC
Q ss_conf 378845---48999888999998750
Q gi|254780716|r 141 SLMVGG---NEKAYNRVENILLSISA 163 (475)
Q Consensus 141 slMvGG---~~~~~~~~~piL~~iaa 163 (475)
T Consensus 154 -EVVSGLaT~~eVae~ly~~a~aWGK 178 (508)
T TIGR02279 154 -EVVSGLATEAEVAEQLYETARAWGK 178 (508)
T ss_pred -EEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf -6623635428999999999873288