HHsearch alignment for GI: 254780716 and conserved domain: TIGR02354
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=93.92 E-value=0.37 Score=28.05 Aligned_cols=131 Identities=23% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCE---EEEEEC------CH----------HHHHHHHHHCCCCCCCCEEC------
Q ss_conf 988056981571116889999978985---999739------98----------99999997122112784032------
Q gi|254780716|r 2 KQADIGIIGLGSMGSNLSLNILDKGFR---LAVYNK------DF----------ELTDVFIKKISGLSQKVIVT------ 56 (475)
Q Consensus 2 ~k~~IGiIGLG~MG~~mA~nL~~~G~~---V~vydr------~~----------~~~~~l~~~~~~~~~~~~~~------ 56 (475)
T Consensus 20 ~~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~----einPy~~ie~~ 95 (200)
T TIGR02354 20 KKASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENIS----EINPYVEIEII 95 (200)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHH----HHCCCCEEEEE
T ss_conf 05827897016116899999987302202566404323665613257876248621799998786----50884212311
Q ss_pred ------CCHHHHHHHCCCCCEEEEECCCHHHHHHHH-HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCC
Q ss_conf ------898999860577889999769906999999-9997207899899967986578999999999847994306754
Q gi|254780716|r 57 ------KNLEQMVEAVCKPRKILMMVTDGDPVDQLI-DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGV 129 (475)
Q Consensus 57 ------~s~~e~v~~l~~pr~Iil~vp~g~~v~~vi-~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~pV 129 (475)
T Consensus 96 d~ki~E~N~~~~fkdaD---iv~EAF-Dna~aKam~~n~vl~~ykdk~li~ASGlAGy~D~NsI~trKI~k~FY~cGDg~ 171 (200)
T TIGR02354 96 DEKIDEENLDKLFKDAD---IVCEAF-DNAEAKAMLVNAVLEKYKDKKLIAASGLAGYDDANSIKTRKISKRFYVCGDGK 171 (200)
T ss_pred ECCCCHHHHHHHHHCCC---EEEECC-CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEECCC
T ss_conf 02127667987840674---788716-99889999999999767864587602664524211000121146303874472
Q ss_pred CCCCCCCCCCCEEEE
Q ss_conf 676000356843788
Q gi|254780716|r 130 SGGVKGARSGASLMV 144 (475)
Q Consensus 130 SGG~~gA~~G~slMv 144 (475)
T Consensus 172 ~----~ak~G~gLma 182 (200)
T TIGR02354 172 S----DAKSGRGLMA 182 (200)
T ss_pred C----CCCCCCCCCC
T ss_conf 2----2001631025