HHsearch alignment for GI: 254780716 and conserved domain: cd01483
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.23 E-value=0.0023 Score=44.39 Aligned_cols=123 Identities=17% Similarity=0.245 Sum_probs=75.1
Q ss_pred EEEEEECCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCC-CC-CCCEECCCHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 05698157111688999997898-599973998999999971221-12-7840328989998605778899997699069
Q gi|254780716|r 5 DIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISG-LS-QKVIVTKNLEQMVEAVCKPRKILMMVTDGDP 81 (475)
Q Consensus 5 ~IGiIGLG~MG~~mA~nL~~~G~-~V~vydr~~~~~~~l~~~~~~-~~-~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~ 81 (475)
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~n-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf 999999798999999999993797199997898750014642258988949224899999998568-9838999945689
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCC
Q ss_conf 9999999972078998999679865789999999998479943067546760
Q gi|254780716|r 82 VDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGGV 133 (475)
Q Consensus 82 v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~pVSGG~ 133 (475)
T Consensus 80 -~~~~---~~~~~~~dvvi~~~D~-~~~r~~l~~~~~~~~ip~i~~~~~g~~ 126 (143)
T cd01483 80 -EDNL---DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred -HHHH---HHHHCCCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf -6469---9997599999987799-999999999999869988996366768