HHsearch alignment for GI: 254780716 and conserved domain: cd01491
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.63 E-value=0.029 Score=36.25 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCC--EECCCHHHHHHHCCCCCEEEEECC
Q ss_conf 998805698157111688999997898-59997399899999997122112784--032898999860577889999769
Q gi|254780716|r 1 MKQADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGLSQKV--IVTKNLEQMVEAVCKPRKILMMVT 77 (475)
Q Consensus 1 M~k~~IGiIGLG~MG~~mA~nL~~~G~-~V~vydr~~~~~~~l~~~~~~~~~~~--~~~~s~~e~v~~l~~pr~Iil~vp 77 (475)
T Consensus 17 l~~s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~~~~l~~lN-p~v~v~~~~ 95 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVST 95 (286)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 9759299999876399999999973996599995996886776347225777857888999999999648-982589635
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf 9069999999997207899899967986578999999999847994306754676
Q gi|254780716|r 78 DGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGG 132 (475)
Q Consensus 78 ~g~~v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~pVSGG 132 (475)
T Consensus 96 ~-~~-~------~~~~~~fdvVv~t~-~~~~~~~~iN~~cR~~~i~Fi~~~~~G~ 141 (286)
T cd01491 96 G-PL-T------TDELLKFQVVVLTD-ASLEDQLKINEFCHSPGIKFISADTRGL 141 (286)
T ss_pred C-CC-C------HHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7-77-8------88853888899918-9989999998888775981999505775