HHsearch alignment for GI: 254780716 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=96.06 E-value=0.14 Score=31.29 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred EEEEEEC-CHHHHHHHHHHHH-CCCEE-EEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 0569815-7111688999997-89859-9973998999999971221127840328989998605778899997699069
Q gi|254780716|r 5 DIGIIGL-GSMGSNLSLNILD-KGFRL-AVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDP 81 (475)
Q Consensus 5 ~IGiIGL-G~MG~~mA~nL~~-~G~~V-~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~ 81 (475)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~---------------~~d~~~~~~------------~~~~- 53 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLL---------------GSDAGELAG------------PLGV- 53 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---------------CCCCCCCCC------------CCCC-
T ss_conf 899988988789999999985899689999943896122---------------543100146------------7871-
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999999720789989996798657899999999984799430
Q gi|254780716|r 82 VDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125 (475)
Q Consensus 82 v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fi 125 (475)
T Consensus 54 --~~~~~~~~~~~~~DVvIDFS--~p~~~~~~~~~~~~~~~~~V 93 (122)
T pfam01113 54 --PVTDDLEEVLADADVLIDFT--TPEATLENLELALKHGKPLV 93 (122)
T ss_pred --EECCCHHHHCCCCCEEEEEC--CHHHHHHHHHHHHHCCCCEE
T ss_conf --11244777515788899906--87899999999996799889