HHsearch alignment for GI: 254780716 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.40 E-value=2.2e-06 Score=66.67 Aligned_cols=96 Identities=15% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 8805698157111688999997898-599973998999999971221127840328989998605778899997699069
Q gi|254780716|r 3 QADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDP 81 (475)
Q Consensus 3 k~~IGiIGLG~MG~~mA~nL~~~G~-~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~ 81 (475)
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~---~~~~l~~~l~~~DivI~aT~s~~~ 88 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEAL---PLDELEELLAEADIVISATSAPTP 88 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEE---ECHHHHHHHHHCCEEEEECCCCCC
T ss_conf 89899999609999999999975998899954757899999998499725898---513544136319999992599973
Q ss_pred HHHHHHHHHHCCCCCCEEEECC
Q ss_conf 9999999972078998999679
Q gi|254780716|r 82 VDQLIDKLKPLLSPEDILLDGG 103 (475)
Q Consensus 82 v~~vi~~l~~~l~~g~iiID~s 103 (475)
T Consensus 89 ii~--~~~~~~~~~~~~iiDLa 108 (134)
T pfam01488 89 IIT--KEMVEEALKGLLFVDIA 108 (134)
T ss_pred EEC--HHHHHHCCCCEEEEEEC
T ss_conf 648--99997443985999834