HHsearch alignment for GI: 254780716 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=91.24 E-value=1.3 Score=24.19 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=54.3
Q ss_pred EEE-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
Q ss_conf 981-5711168899999789859997399899999997122112784032898999860577889999769906999999
Q gi|254780716|r 8 IIG-LGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLI 86 (475)
Q Consensus 8 iIG-LG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v~~vi 86 (475)
T Consensus 3 VtG~~GfiGs~l~~~L~~~g~~v~~~~r~~~--------------D~~d~~~l~~~~~~~-~pd~VihlAa~~-~~~~~~ 66 (284)
T pfam04321 3 VTGANGQLGRELTRLLAERGVEVVALDRPEL--------------DLTDPEAVAALVREA-RPDVVVNAAAYT-AVDKAE 66 (284)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEECCCCC--------------CCCCHHHHHHHHHHC-CCCEEEECCCCC-CCHHHH
T ss_conf 9648998999999999868998999548625--------------788999999999864-997999724135-556777
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCC
Q ss_conf 999720789989996798657899999999984799430675
Q gi|254780716|r 87 DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIG 128 (475)
Q Consensus 87 ~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~p 128 (475)
T Consensus 67 ~~~~~~----------~~~Nv~~t~~l~~~~~~~~~~~i~~S 98 (284)
T pfam04321 67 SEPELA----------YAVNALGPGNLAEACAARGAPLIHIS 98 (284)
T ss_pred HCHHHH----------HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 488889----------98759999999999874498579841