HHsearch alignment for GI: 254780716 and conserved domain: pfam04321

>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=91.24  E-value=1.3  Score=24.19  Aligned_cols=95  Identities=13%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             EEE-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
Q ss_conf             981-5711168899999789859997399899999997122112784032898999860577889999769906999999
Q gi|254780716|r    8 IIG-LGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLI   86 (475)
Q Consensus         8 iIG-LG~MG~~mA~nL~~~G~~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v~~vi   86 (475)
T Consensus         3 VtG~~GfiGs~l~~~L~~~g~~v~~~~r~~~--------------D~~d~~~l~~~~~~~-~pd~VihlAa~~-~~~~~~   66 (284)
T pfam04321         3 VTGANGQLGRELTRLLAERGVEVVALDRPEL--------------DLTDPEAVAALVREA-RPDVVVNAAAYT-AVDKAE   66 (284)
T ss_pred             EECCCCHHHHHHHHHHHHCCCEEEEECCCCC--------------CCCCHHHHHHHHHHC-CCCEEEECCCCC-CCHHHH
T ss_conf             9648998999999999868998999548625--------------788999999999864-997999724135-556777


Q ss_pred             HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCC
Q ss_conf             999720789989996798657899999999984799430675
Q gi|254780716|r   87 DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIG  128 (475)
Q Consensus        87 ~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid~p  128 (475)
T Consensus        67 ~~~~~~----------~~~Nv~~t~~l~~~~~~~~~~~i~~S   98 (284)
T pfam04321        67 SEPELA----------YAVNALGPGNLAEACAARGAPLIHIS   98 (284)
T ss_pred             HCHHHH----------HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             488889----------98759999999999874498579841