RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(475 letters)
>gnl|CDD|30711 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 569 bits (1468), Expect = e-163
Identities = 223/474 (47%), Positives = 306/474 (64%), Gaps = 1/474 (0%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
M +ADIG+IGL MGSNL+LNI D G+ +AVYN+ E TD F+ + + ++ ++E
Sbjct: 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-RAKGKNIVPAYSIE 59
Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
+ V ++ KPRKIL+MV G PVD +I++L PLL DI++DGGNSH+ DT R+ +LSEK
Sbjct: 60 EFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK 119
Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
GI F+G+GVSGG +GAR G S+M GG ++AY V IL I+AK PCC +GPDG+G
Sbjct: 120 GILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAG 179
Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240
HFVKM+HNGIEY +MQLIA+ Y IL+D L + EI+ +F +W+ G+L SYLI+ITA+IL
Sbjct: 180 HFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239
Query: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300
D G P++D I DKA QKGTG ++I L +T+ A+FAR LS +DE
Sbjct: 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299
Query: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
+ F++D+ ALYAS I+S+ QGF ++ +S++Y W L+L IA
Sbjct: 300 ASKVLAGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIAL 359
Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
IWR GCIIRS+ L+ I + E+P NLL P +++ SLRR+V E G PV
Sbjct: 360 IWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPV 419
Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTE 474
P+ S+ALSY+D++ R ANLIQAQRD+FG+H ++R DK H W
Sbjct: 420 PAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGGGN 473
>gnl|CDD|37864 KOG2653, KOG2653, KOG2653, 6-phosphogluconate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 487
Score = 446 bits (1149), Expect = e-126
Identities = 196/460 (42%), Positives = 284/460 (61%), Gaps = 5/460 (1%)
Query: 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV 63
ADIG+IGL MG NL LNI DKGF + YN+ D F+ K+I +LE V
Sbjct: 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLAN-EAKGTKIIGAYSLEDFV 65
Query: 64 EAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIY 123
+ KPR I+++V G PVDQ I++L P L DI++DGGNS + DT+ R +L++KGI
Sbjct: 66 SKLKKPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGIL 125
Query: 124 FIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNS-PCCALLGPDGSGHF 182
F+G GVSGG +GAR G SLM GG+++A+ +++I I+AK + PCC +G G+GHF
Sbjct: 126 FVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHF 185
Query: 183 VKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSS 242
VKM+HNGIEY +MQLI + Y +L+ L + EI+ +F W+ G+L S+LI+ITA+IL
Sbjct: 186 VKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKF 245
Query: 243 SDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQ 302
D G P++D I DKA QKGTG ++I +L +T+ A+FAR LS +DE +
Sbjct: 246 KDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRAS 304
Query: 303 SFFNPSSHFPLKCFD--SFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
D F+ D+ ALYAS I+S+ QGF ++ +++++ W L+ IA
Sbjct: 305 KVLKGPGVKRDMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIAL 364
Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
+WR GCIIRS L+ I K+ +P NLL P ++ V++ S RR+V E G P
Sbjct: 365 MWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPT 424
Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDK 460
P+ S AL+++D + +R ANL+QAQRD+FG+H ++ +
Sbjct: 425 PAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGE 464
>gnl|CDD|109451 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal
domain. This family represents the C-terminal all-alpha
domain of 6-phosphogluconate dehydrogenase. The domain
contains two structural repeats of 5 helices each.
Length = 290
Score = 351 bits (904), Expect = 2e-97
Identities = 128/293 (43%), Positives = 185/293 (63%), Gaps = 8/293 (2%)
Query: 180 GHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEI 239
GH+VKM+HNGIEY +MQLIA+ Y +L+ L + EI+ +F +W+ G+L SYLI+ITA+I
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 240 LSSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE-- 297
L D G P++D I DKA QKGTG ++ +L + + A+FAR LS ++E
Sbjct: 61 LRKKDE-DGKPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 298 --SKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSL 355
SK P + F++D+ ALYAS I+S+ QGF ++ +S++Y W+L+L
Sbjct: 120 AASKV---LSGPKAAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNL 176
Query: 356 ATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTE 415
IARIWR GCIIR+Q L+ I + ++P NLL P +++K+ S RR+V E
Sbjct: 177 GEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVE 236
Query: 416 NGYPVPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPW 468
G PVP+ S+ALSY+D++ +R ANLIQAQRD+FG+H ++R DK H W
Sbjct: 237 AGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 289
>gnl|CDD|31226 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 300
Score = 195 bits (498), Expect = 2e-50
Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 18/293 (6%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
IG+IGLG MG+NL +LD G + Y+ + + + +L+++V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD------EGATGAASLDELVAK 56
Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125
+ PR + +MV GD D +ID L PLLS DI++DGGNS++ D+ R+ L+EKGI+F+
Sbjct: 57 LSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116
Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185
+G SGGV GA G LM+GG+E+A R+E I +++ C GP GSGHFVKM
Sbjct: 117 DVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYC---GPSGSGHFVKM 173
Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244
+HNGIEY MQ IA+ + +L++S ++ + W+ G + S+L+ +TAE
Sbjct: 174 VHNGIEYGMMQAIAEGFELLKNS--PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD- 230
Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE 297
P +D I + S G G ++ E L + A+ R S D
Sbjct: 231 -----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT 278
Score = 48.7 bits (116), Expect = 3e-06
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378
FVK + N + + + +GF ++ + + L +A +W G +IRS +L+ +
Sbjct: 170 FVKMVHNGIEYGMMQAIAEGFELL----KNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAE 225
Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAALSY-FDTFIHDR 437
+ +DP + S S + + T V + G P P ++ AL F + D
Sbjct: 226 AFKKDPDLDQISGRVSDSGEGRWT-------VEEALDLGVPAPVIALALMMRFRSRQDDT 278
Query: 438 GTANLIQAQRDFFGSHGFDRKD 459
++ A R+ FG H +K+
Sbjct: 279 FAGKVLAALRNEFGGHAVKKKN 300
>gnl|CDD|146202 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 166 bits (422), Expect = 2e-41
Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 19/178 (10%)
Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQM 62
A IG IGLG MGS ++LN+L G+ + VYN+ E + + + + + +
Sbjct: 1 MAKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVA------EGAVAAASPAEA 54
Query: 63 VEAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSE 119
+ ++ MV G VD +I D L P L P DI++DG DT+ + +L E
Sbjct: 55 AASA---DVVITMVPAGAAVDAVIFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKELKE 111
Query: 120 KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176
KGI F+ VSGG +GA +G S+MVGG+E+A+ RV+ IL ++ A C +GP
Sbjct: 112 KGIRFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA------CVTYIGP 163
>gnl|CDD|32267 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 95.7 bits (238), Expect = 3e-20
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK-VIVTKNLEQMVE 64
I IGLG MGS ++ N+L G + VYN+ E K L+ V + +
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE------KAAELLAAAGATVAASPAEAAA 56
Query: 65 AVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121
++ M+ D V ++ + L L P I++D + + L+ KG
Sbjct: 57 EA---DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG 113
Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
+ F+ VSGGV GA +G ++MVGG+ +A+ R + +L ++ +GP G+G
Sbjct: 114 LEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIV------HVGPVGAG 167
Query: 181 HFVKMIHNGIEYANMQLIA 199
K+ +N + N+ +A
Sbjct: 168 QAAKLANNILLAGNIAALA 186
>gnl|CDD|35630 KOG0409, KOG0409, KOG0409, Predicted dehydrogenase [General
function prediction only].
Length = 327
Score = 66.8 bits (163), Expect = 1e-11
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 28/204 (13%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
IG IGLG+MGS + N++ G+++ VY++ + F + + ++ + + +
Sbjct: 38 IGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANS---PAEVAEDSDV 94
Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDT----QIRSLQLSE-- 119
V + MV + V ++ +LS + G D SL++++
Sbjct: 95 V------ITMVPNPKDVKDVLLGKSGVLS----GIRPGKKATVDMSTIDPDTSLEIAKAI 144
Query: 120 --KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176
KG F+ VSGGVKGA G ++M GG+E + + + LG
Sbjct: 145 SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF------LGG 198
Query: 177 DGSGHFVKMIHNGIEYANMQLIAD 200
G+G K+ +N + ++M +A+
Sbjct: 199 VGNGQAAKLCNNMLLGSSMVGLAE 222
>gnl|CDD|30635 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 36.1 bits (83), Expect = 0.024
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+GI+GLG MG +L+ + + G + + +D + G+ ++ V E EA
Sbjct: 6 VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEA 65
Query: 66 ----VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLD 101
V P + +++ +L P L I+ D
Sbjct: 66 DLVIVAVPIEATE---------EVLKELAPHLKKGAIVTD 96
>gnl|CDD|30589 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 329
Score = 31.7 bits (72), Expect = 0.41
Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTD---------VFIKKISGLSQKVIVT 56
I +IG GS G+ L+ + G + ++ +D E+ ++ I L + T
Sbjct: 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGIL-LPPNLKAT 62
Query: 57 KNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILL 100
+L + ++ I+++ + +++ +LKPLL + I++
Sbjct: 63 TDLAEALDGA----DIIVIAVPSQALREVLRQLKPLLLKDAIIV 102
>gnl|CDD|34192 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 29.6 bits (66), Expect = 2.0
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 70 RKILMMVTDGDPVD 83
RKILMM++DG PVD
Sbjct: 537 RKILMMISDGAPVD 550
>gnl|CDD|33755 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain
[General function prediction only].
Length = 558
Score = 29.2 bits (65), Expect = 2.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDR 457
+L L FD T +I+A+ FGS FD+
Sbjct: 173 ALRGELPNFDKERLASDTKKIIEAEIKVFGSAPFDK 208
>gnl|CDD|119387 cd06265, RNase_A_canonical, Canonical RNase A family includes all
vertebrate homologues to the bovine pancreatic
ribonuclease A (RNase A) that contain the catalytic
site, necessary for RNase activity. In the human genome
8 RNases , refered to as "canonical" RNases, have been
identified, pancreatic RNase (RNase 1), Eosinophil
Derived Neurotoxin (SEDN/RNASE 2), Eosinophil Cationic
Protein (ECP/RNase 3), RNase 4, Angiogenin (RNase 5),
RNase 6 or k6, the skin derived RNase (RNase 7) and
RNase 8. The eight human genes are all located in a
cluster on chromosome 14. Canonical RNase A enzymes have
special biological activities; for example, some
stimulate the development of vascular endothelial cells,
dendritic cells, and neurons, are cytotoxic/anti-tumoral
and/or anti-pathogenic. RNase A is involved in
endonucleolytic cleavage of 3'-phosphomononucleotides
and 3'-phosphooligonucleotides ending in C-P or U-P with
2',3'-cyclic phosphate intermediates. The catalytic
mechanism is a transphosphorylation of P-O 5' bonds on
the 3' side of pyrimidines and subsequent hydrolysis to
generate 3' phosphate groups. The canonical RNase A
family proteins have a conserved catalytic triad (two
histidines and one lysine). They also share 6 to 8
cysteines that form three to four disulfide bonds. Two
disulfide bonds that are close to the N and C termini
contribute most significantly to conformational
stability. Angiogenin or RNAse 5 has been implicated in
tumor-associated angiogenesis. Comparative analysis in
mammals and birds indicates that the whole family may
have originated from a RNase 5-like gene. This
hypothesis is supported by the fact that only RNase
5-like RNases have been reported outside the mammalian
class. The RNase 5 group would therefore be the most
ancient form of this family, and all other members would
have arisen during mammalian evolution..
Length = 115
Score = 29.2 bits (66), Expect = 2.5
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 401 KTIPSLRRIVVTCTENGYPV 420
+ PS R+IVV C ENG PV
Sbjct: 93 RGTPSTRKIVVAC-ENGVPV 111
>gnl|CDD|37228 KOG2017, KOG2017, KOG2017, Molybdopterin synthase sulfurylase
[Coenzyme transport and metabolism].
Length = 427
Score = 29.2 bits (65), Expect = 2.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 84 QLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLS 118
+LI + LS +L DG + HF ++RS +
Sbjct: 246 KLIAGIGESLSGRLLLFDGLSGHFRTIRLRSRRPK 280
>gnl|CDD|30693 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid
transport and metabolism].
Length = 266
Score = 29.0 bits (65), Expect = 2.8
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 6 IGIIGLGSMGSNLSLNILDKG----FRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQ 61
IG IG G+MG + +L G + V N+ E + V+ T + ++
Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG-----VVTTTDNQE 58
Query: 62 MVE 64
VE
Sbjct: 59 AVE 61
>gnl|CDD|30808 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
metabolism].
Length = 333
Score = 29.0 bits (65), Expect = 3.1
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRL-AVYNKDFELTDVF------IKKISGLSQKV 53
MK +G++GLG++GS + + +K L + + V ++ + L+ +V
Sbjct: 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEV 60
Query: 54 IVTKNLEQMVEAVCKPRKILMMV-------TDGDPVDQLIDKLK 90
T + + V I ++V +P D + L+
Sbjct: 61 WTTDGALSLGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALE 104
>gnl|CDD|29227 cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain
both membrane bound and periplasmic nitrate reductases.
Denitrification plays a major role in completing the
nitrogen cycle by converting nitrate or nitrite to
nitrogen gas. The pathway for microbial denitrification
has been established as NO3- ------> NO2- ------> NO
-------> N2O ---------> N2. This reaction generally
occurs under oxygen limiting conditions. Genetic and
biochemical studies have shown that the first srep of
the biochemical pathway is catalyzed by periplasmic
nitrate reductases. This family is widely present in
proteobacteria and firmicutes. This version of the
domain is also present in some archaeal members. The
function of the vWA domain in this sub-group is not
known. Members of this subgroup have a conserved MIDAS
motif..
Length = 174
Score = 28.0 bits (62), Expect = 5.5
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 70 RKILMMVTDGDPVD 83
RKIL++++DG+P D
Sbjct: 104 RKILLVISDGEPND 117
>gnl|CDD|36138 KOG0920, KOG0920, KOG0920, ATP-dependent RNA helicase A [RNA
processing and modification].
Length = 924
Score = 28.0 bits (62), Expect = 6.2
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 363 RAGCIIRSQILNDIVKSLTEDPSSTNL-LNIPSISEKVKKTIPSLRRIVVTCTENGYPVP 421
A + + + +L E T L L++ S+ V+ L + C + P
Sbjct: 590 PADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLD---PAL 646
Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGS 452
+++AALS+ F+ G +
Sbjct: 647 TIAAALSFKSPFVSPLGKREEADKAKKLLAL 677
>gnl|CDD|30408 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 338
Score = 27.8 bits (62), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAV 31
+ IIG GS G +LN+ D G + +
Sbjct: 21 VAIIGYGSQGHAQALNLRDSGLNVII 46
>gnl|CDD|37674 KOG2463, KOG2463, KOG2463, Predicted RNA-binding protein Nob1p
involved in 26S proteasome assembly [Posttranslational
modification, protein turnover, chaperones].
Length = 376
Score = 27.7 bits (61), Expect = 7.1
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 364 AGCIIRSQILNDIVKS-------LTE--DPSSTNLLNIPSISEKVKKTIPSLRRIVVTCT 414
G II +IL + S + E D +S L + K+++ P R V+
Sbjct: 12 TGAIIEKRILTNKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFA 71
Query: 415 ENGYPVPSLSA------ALSY 429
+ SLS AL+Y
Sbjct: 72 KLTGDYSSLSDTDIKVLALTY 92
>gnl|CDD|37591 KOG2380, KOG2380, KOG2380, Prephenate dehydrogenase (NADP+)
[Amino acid transport and metabolism].
Length = 480
Score = 27.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNK 34
I IIG G+MG L+ ++D G L +++
Sbjct: 55 IAIIGFGNMGQFLAETLIDAGHGLICHSR 83
>gnl|CDD|35524 KOG0303, KOG0303, KOG0303, Actin-binding protein Coronin, contains
WD40 repeats [Cytoskeleton].
Length = 472
Score = 27.6 bits (61), Expect = 8.5
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 317 DSFVKDLENALY---ASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQIL 373
D F +DL Y + T W+ GK ++ SL + R + + IL
Sbjct: 353 DLFQEDL----YPDTPGPEPALTAEEWLSGKDADPILISLRDGYVPPKHRELRVKKRNIL 408
Query: 374 NDIVKSLTED--PSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL 427
+D SS++ P ++ + ++ + + + L L
Sbjct: 409 SDSRPPAAPSGWRSSSSTSEAPLSQHTLETLLEEIKALRAPVQKQEQRITRLEEKL 464
>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 27.5 bits (61), Expect = 8.7
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 26/105 (24%)
Query: 2 KQADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGL----------- 49
K + +IG G MG ++ ++ +KG ++ + N+ E + KK+
Sbjct: 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL 236
Query: 50 -----------SQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVD 83
+ I+T+ +MVE K RK L++V P D
Sbjct: 237 AEADVVISSTSAPHPIITR---EMVERALKIRKRLLIVDIAVPRD 278
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,550,839
Number of extensions: 290264
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 29
Length of query: 475
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 378
Effective length of database: 4,167,664
Effective search space: 1575376992
Effective search space used: 1575376992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)