BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(475 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/475 (100%), Positives = 475/475 (100%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE
Sbjct: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK
Sbjct: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG
Sbjct: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240
HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL
Sbjct: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240
Query: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300
SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK
Sbjct: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300
Query: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR
Sbjct: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV
Sbjct: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES 475
PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES
Sbjct: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES 475
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 26.6 bits (57), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
M D+ IIG G GS ++ KGF A+ + L D+ + G + N+
Sbjct: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDG 102
++ + +P +V D D+LI + +I LD
Sbjct: 61 DFLQDIAEPVSSFRLV---DITDRLITAPDAIFHSSEIGLDA 99
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
[Candidatus Liberibacter asiaticus str. psy62]
Length = 354
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35
MK+ IGIIG G + LS++ GF + + D
Sbjct: 1 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPD 35
>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 25.4 bits (54), Expect = 1.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419
L ++ S ++++ + IP+++ VVT TEN P
Sbjct: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85
>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 25.4 bits (54), Expect = 1.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419
L ++ S ++++ + IP+++ VVT TEN P
Sbjct: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 396 SEKVKKTIPSLRRIVVTCTENGYP 419
++++ + IP+++ VVT TEN P
Sbjct: 62 AQQIIQNIPTVKNAVVTLTENKNP 85
>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 226 GKLSSYLIKITAEILSSSDTI----TGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTI 281
GKL + + ++++ S D+I G P+ID I + ++ + + EG KL I
Sbjct: 211 GKLGTLFV-CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG--II 267
Query: 282 TETAIFARNL 291
TE IF RN
Sbjct: 268 TEGDIF-RNF 276
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 86 IDKLKPLLSPEDILLDGGN----SHFCDTQIRSLQLSEKGIY 123
I ++ + P D L D +H T + S Q+SEKGIY
Sbjct: 309 ITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIY 350
>gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 349
Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 294 YRDESKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYS--W 351
+ ++ K M+SFF + K L N + A IL FT F+ G S
Sbjct: 71 FSEDEKDMRSFFCAAPW--KKILTVLAGPLANCVMA--ILFFTFFFYNTGVMKPVVSNVS 126
Query: 352 SLSLATIARIWRAGCII-----RSQILNDIVKSLTEDPSSTNLLNIPSISEKVK----KT 402
S A IA + + CII ++ + E+P + +++ E V K
Sbjct: 127 PASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENP--LHEISLVLYREHVGVLHLKV 184
Query: 403 IPSLRRIVVTCTENGYP--VPSLSAALSYFDTFIH--------DRGTANLIQAQRDFFG- 451
+P L+ T G VPS+ + SY +T +H RG + R F G
Sbjct: 185 MPRLQD---TVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGV 241
Query: 452 -SHGFDRKDKISEPHGP 467
S F + ++++ GP
Sbjct: 242 LSSAFGKDTRLNQISGP 258
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 23.9 bits (50), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 157 ILLSISAKYQNSPCCALLGPDGSG 180
I+ ++ K + S A++GP+GSG
Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSG 41
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 23.9 bits (50), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 195 MQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTITGMP 250
MQL++ L D++ + ++I H+ KW G ++ + A S D I G+P
Sbjct: 145 MQLVSPT-TCLYDTVKEEKIDIEHVIKKW--GIPPEKMVCLQALTGDSIDNIPGIP 197
>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 210
Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 246 ITGMPIIDVICDKASQKGT 264
ITG+P I VIC+ + GT
Sbjct: 159 ITGLPPIAVICELVNDDGT 177
>gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 413
Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 214 LEISHLFSKWDTGKLSS----YLIKITAEILSSSD 244
L I H WD GK+ S Y++K +I S D
Sbjct: 211 LSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPD 245
>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 347
Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 323 LENALYASTILSFTQGFW---VIGKSSEKYSWSLSLATIARIWRAGCI-----IRSQILN 374
L + LY S L+ G W + + + LSL WR I + N
Sbjct: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148
Query: 375 DIVKSLTEDPSSTNLLNIPSISEKVKKTIPS 405
++KSL E P + I S + TI S
Sbjct: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRS 179
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,340
Number of Sequences: 1233
Number of extensions: 12907
Number of successful extensions: 61
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 20
length of query: 475
length of database: 328,796
effective HSP length: 77
effective length of query: 398
effective length of database: 233,855
effective search space: 93074290
effective search space used: 93074290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)