HHsearch alignment for GI: 254780717 and conserved domain: cd01020
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=443.40 Aligned_cols=254 Identities=19% Similarity=0.319 Sum_probs=223.2
Q ss_pred CCEEEEEECHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 880599972289999999707944178870-5899835335680245665025789996766103568999731455767
Q gi|254780717|r 22 GSLQVVVSIKPIHSIVSCIMQGIGTPALLV-KGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNV 100 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~-~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~ 100 (294)
T Consensus 1 gkl~Vvat~~~l~dl~~~I~Gd~v~V~~li~~p~~dPH~yep~p~d~~~l~~Adlvv~nG~~lE~wl~k~~~~~~~--~~ 78 (264)
T cd01020 1 GKINVVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADTKD--VI 78 (264)
T ss_pred CCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCC--CE
T ss_conf 9737999771999999998288169999447999896568799999999962989999588816899999852899--66
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99751354462100121112332122475677655556789999999974218656588998999986312223589998
Q gi|254780717|r 101 VTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 (294)
Q Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 180 (294)
T Consensus 79 ~~~~~------------~~~~~~~~~~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~L~~~~~~ 146 (264)
T cd01020 79 VIAAD------------LDGHDDKEGDNPHLWYDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAE 146 (264)
T ss_pred EEECC------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88336------------666667799998937799999999999999999869021799999999999999999999998
Q ss_pred HCCCCCCCEEEECCCHHHHHHHHCCCCEEC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH--
Q ss_conf 503002781462062157789874981200-----3467754449788999999997549938998188897899999--
Q gi|254780717|r 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVT-----FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSI-- 253 (294)
Q Consensus 181 ~~~~~~~~~~i~~H~a~~Yf~~~~gl~~~~-----~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i-- 253 (294)
T Consensus 147 ~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~q~~~~~a~~i~~ 226 (264)
T cd01020 147 LSAKYKGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNITG 226 (264)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 51457898699965417999997799450442034123788999999999999999986999999828988089999999
Q ss_pred -HHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf -9971990899805336787781678999999999998741
Q gi|254780717|r 254 -TNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNC 293 (294)
Q Consensus 254 -a~e~~~~~~~ld~~~~~~~~~~~~Y~~~m~~n~~~l~k~l 293 (294)
T Consensus 227 ~a~~~~v~v~~l~---e~~-~~~~tY~~~M~~Nl~~i~~aL 263 (264)
T cd01020 227 LAKRSGVPVVEVT---ETM-PNGTTYLTWMLKQVDQLEKAL 263 (264)
T ss_pred HHHHCCCEEEECC---CCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 9985595698425---678-999989999999999999973