HHsearch alignment for GI: 254780717 and conserved domain: pfam01297
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=100.00 E-value=0 Score=450.54 Aligned_cols=266 Identities=32% Similarity=0.516 Sum_probs=244.2
Q ss_pred EEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99972289999999707944178870589983533568024566502578999676610356899973145576799751
Q gi|254780717|r 26 VVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSH 105 (294)
Q Consensus 26 Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~i~~~~ 105 (294)
T Consensus 1 Vv~t~~pl~~iv~~i~gd~~~V~~l~~~g~dpH~y~~~p~d~~~l~~ADlii~~G~~~E~~l~~~~~~~~~~~~~v~~~~ 80 (272)
T pfam01297 1 VVASIPPLADLVKAIGGDKVEVTSLVPPGADPHTYEPTPSDIKKLAKADLVVYNGAGLEPWLDKLLASLANKVKVVDLSE 80 (272)
T ss_pred CEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 98965799999999808934899806999796577689999999956999999298716789999985689984898357
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 35446210---012111233212247567765555678999999997421865658899899998631222358999850
Q gi|254780717|r 106 SPDLHRIL---LRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSIL 182 (294)
Q Consensus 106 ~~~~~~~~---~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 182 (294)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l 160 (272)
T pfam01297 81 GIELLDAPGHEHDHDEHDHDDHGHGDPHIWLDPKNAKAMAEAIADALSELDPENAATYEKNAAAFLKKLDELDAEIKAKL 160 (272)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86555576545655555555678999806268277999999999999986854089999999999999999999999875
Q ss_pred CCCCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 3002781462062157789874981200-346775444978899999999754993899818889789999999719908
Q gi|254780717|r 183 QPVEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGVMS 261 (294)
Q Consensus 183 ~~~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~ 261 (294)
T Consensus 161 ~~~~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~~ 240 (272)
T pfam01297 161 APIPGKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIFVEPQFSPKLAETLAEETGAKV 240 (272)
T ss_pred HCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCE
T ss_conf 13476438985550699999779927540300356788999999999999984998999838999099999999969976
Q ss_pred E--EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9--98053367877816789999999999987419
Q gi|254780717|r 262 A--ILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 (294)
Q Consensus 262 ~--~ld~~~~~~~~~~~~Y~~~m~~n~~~l~k~ls 294 (294)
T Consensus 241 ~~~~~d~l~~---~~~~~Y~~~m~~n~~~l~~al~ 272 (272)
T pfam01297 241 VPLYLDPLGS---EGGDTYLELMRHNLDTLAEALG 272 (272)
T ss_pred EEEECCCCCC---CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8873578888---8847799999999999998649