HHsearch results for GI: 254780717 and protein with PDBid: 1toa_A

>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=100.00  E-value=0  Score=444.59  Aligned_cols=270  Identities=20%  Similarity=0.297  Sum_probs=235.3

Q ss_pred             CCCCCCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf             13238805999722899999997079441788705899835335680245665025789996766103568999731455
Q gi|254780717|r   18 VARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQ   97 (294)
Q Consensus        18 ~~~~~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~   97 (294)
                      .++.+++.||||+.|++++|++|+||+++|++|+|+|.|||+|+|||+|+++|++||+||+||.+||+|+.+++.+..+.
T Consensus        33 ~~~~~k~~VV~T~~pl~~iv~~I~gd~v~V~~Lip~g~dPH~yep~p~di~~l~~ADliv~~G~~~E~~~~~~~~~~~~~  112 (313)
T 1toa_A           33 AAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGS  112 (313)
T ss_dssp             ----CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTS
T ss_pred             CCCCCCCEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             10169947999885999999998088159998159897965676899999999719999983898666789999861466


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76799751354462100121112332122475677655556789999999974218656588998999986312223589
Q gi|254780717|r   98 SNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKE  177 (294)
Q Consensus        98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~  177 (294)
                      ..++.......   .    ...++++++..|||+|+||.|++.++++|+++|+++||++++.|++|+++|.++|++|+++
T Consensus       113 ~~v~~~~~~~~---~----~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~L~~~  185 (313)
T 1toa_A          113 RLVVAVSETIP---V----SQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAY  185 (313)
T ss_dssp             SEEEEGGGGSC---G----GGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCC---C----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65311246777---1----0212545565566521170579999999999998758423799999999999999999999


Q ss_pred             HHHHCC--CCCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf             998503--002781462062157789874981200-34677544497889999999975499389981888978999999
Q gi|254780717|r  178 LHSILQ--PVEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSIT  254 (294)
Q Consensus       178 ~~~~~~--~~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia  254 (294)
                      ++..+.  +.+++.++++||+|+||+++|||++.+ +..+++.+||++++.++++.+|+++++|||+|++++++.++.|+
T Consensus       186 ~~~~~~~~~~~~~~~v~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia  265 (313)
T 1toa_A          186 VRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALR  265 (313)
T ss_dssp             HHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEECCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
T ss_conf             99998764303551010266799999976997242235688743146899999999998499889984898909999999


Q ss_pred             HHHCCCEEE------ECCCCCCCC-CCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             971990899------805336787-7816789999999999987419
Q gi|254780717|r  255 NDTGVMSAI------LDPEGMLIA-EGPELYFQLMRSMSNSIAKNCS  294 (294)
Q Consensus       255 ~e~~~~~~~------ld~~~~~~~-~~~~~Y~~~m~~n~~~l~k~ls  294 (294)
                      +++++++..      +.+.+...+ .+.++|++||+.|+++|.++||
T Consensus       266 ~~~~~k~~~v~~~~~l~~d~l~~~~~~~~~Y~~~m~~N~~~i~~aLs  312 (313)
T 1toa_A          266 DAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAALA  312 (313)
T ss_dssp             HHHHTTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHHC
T ss_pred             HHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             98678841324577235444567888867799999999999999867