HHSEARCH alignment of GI: 254780717 and SCOP domain: d1toaa_

Alignment
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=100.00  E-value=0  Score=442.28  Aligned_cols=266  Identities=20%  Similarity=0.290  Sum_probs=235.2

Q ss_pred             CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf             88059997228999999970794417887058998353356802456650257899967661035689997314557679
Q gi|254780717|r   22 GSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVV  101 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      |+++||||++|++++|++|+||+++|++|+|+|+|||+|+|+|+|+++|++||+|||+|.+||+|+.+++.+..++..++
T Consensus         1 gkp~Vv~t~~pl~~~v~~I~gd~v~V~~lip~~~dPH~ye~~p~d~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~v~   80 (277)
T d1toaa_           1 GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVV   80 (277)
T ss_dssp             CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             99899998879999999982994589980697979827768999999995699999989986613589998647887155


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97513544621001211123321224756776555567899999999742186565889989999863122235899985
Q gi|254780717|r  102 TLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSI  181 (294)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~  181 (294)
                      .......       ....++|+++..|||+|+||.|++.++++|+++|+++||+|++.|++|+++|.++|++|++++++.
T Consensus        81 ~~~~~~~-------~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~l~~~~~~~  153 (277)
T d1toaa_          81 AVSETIP-------VSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRK  153 (277)
T ss_dssp             EGGGGSC-------GGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCC-------CCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2044444-------210135453335641440741589999999999998746667899999999999999987899999


Q ss_pred             CC--CCCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf             03--002781462062157789874981200-346775444978899999999754993899818889789999999719
Q gi|254780717|r  182 LQ--PVEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTG  258 (294)
Q Consensus       182 ~~--~~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~  258 (294)
                      +.  |..+|.++++||+|+||+++|||++.+ ++.+++.+||++++.++++.+|+++++|||+|++++++.++.|+++++
T Consensus       154 ~~~~~~~~~~~v~~H~a~~Yf~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~  233 (277)
T d1toaa_         154 AQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQ  233 (277)
T ss_dssp             HHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             87501464389994551255787348640111233442134147999999999851770899547788189999999857


Q ss_pred             CCEEEECC------CCCCC-CCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             90899805------33678-77816789999999999987419
Q gi|254780717|r  259 VMSAILDP------EGMLI-AEGPELYFQLMRSMSNSIAKNCS  294 (294)
Q Consensus       259 ~~~~~ld~------~~~~~-~~~~~~Y~~~m~~n~~~l~k~ls  294 (294)
                      +++..+++      .+... ..+..+|++||++|+++|.++||
T Consensus       234 ~k~~~~~~~~~l~~d~l~~~~~~~~tY~~~m~~N~~~i~~aL~  276 (277)
T d1toaa_         234 ARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAALA  276 (277)
T ss_dssp             TTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             8841334477235444567788836599999999999999867


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: TroA-like
domain: Periplasmic zinc binding protein TroA
species: Treponema pallidum [TaxId: 160]