RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter
[Candidatus Liberibacter asiaticus str. psy62]
         (294 letters)



>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding
           receptor, metal-binding, helical backbone, alpha/beta
           domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
          Length = 286

 Score =  184 bits (467), Expect = 2e-47
 Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 7/277 (2%)

Query: 21  AGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLG 80
              + VV S  P++++   +   +    ++  GA   H +   +++   + +AD+  +  
Sbjct: 10  TQGMSVVTSFYPMYAMTKEVSGDLNDVRMIQSGAG-IHSFEPSVNDVAAIYDADLFVYHS 68

Query: 81  AEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD----DLHLWLNPL 136
             +E++      +L K    V  +  P     +                  D H W +P+
Sbjct: 69  HTLEAWARDLDPNLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHTWTDPV 128

Query: 137 NVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEA 196
                A  IA EL + DP++K  Y KN + FK +  QL +E     + V  K  +  H A
Sbjct: 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTA 188

Query: 197 YRYFASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITN 255
           + Y A  + L  +    +S         L+ I+  +    +  +F     + KI  +I  
Sbjct: 189 FSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAK 248

Query: 256 DTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKN 292
            TG     L P       G + Y + +R+    + + 
Sbjct: 249 STGAKVKTLSPLEAAP-SGNKTYLENLRANLEVLYQQ 284


>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake
           transporter; ZNUA, loop, metal-binding, metal binding
           protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
           2ov3_A 2ov1_A
          Length = 291

 Score =  177 bits (449), Expect = 3e-45
 Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 32/292 (10%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
           + + VSI P    +  I   +   ++LV G + PH Y  +  +   L  A+    +G   
Sbjct: 3   MDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGF 62

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRD------------------------NHS 119
           E   ++ L + N    ++  +       +   D                           
Sbjct: 63  EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122

Query: 120 HFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELH 179
                   D H+WL+P  V+  A  IA EL + DP N+  YE N   F  +L +L++EL 
Sbjct: 123 AKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELG 182

Query: 180 SILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCL 239
            ILQP+ ++K IVFH ++ YFA  YNL  +           A  L+ +      + ++ +
Sbjct: 183 QILQPLPQRKFIVFHPSWAYFARDYNLVQIPI-EVEGQEPSAQELKQLIDTAKENNLTMV 241

Query: 240 FYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291
           F   +F +K   +I  + G    +LDP           +   +++++  IA 
Sbjct: 242 FGETQFSTKSSEAIAAEIGAGVELLDPLA-------ADWSSNLKAVAQKIAN 286


>3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding,
           cell membrane, copper, copper transport, ION transport;
           1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A
          Length = 294

 Score =  171 bits (433), Expect = 2e-43
 Identities = 64/285 (22%), Positives = 114/285 (40%), Gaps = 7/285 (2%)

Query: 16  SSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADI 75
           +  A++  L+VV +   I  +   I         +V     PHEY     +A    NAD+
Sbjct: 10  AKTAKSDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSNADV 69

Query: 76  IFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNP 135
           IF+ G  +E         L K +          +   +         +   +D H WLN 
Sbjct: 70  IFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGASEKGKEDPHAWLNL 129

Query: 136 LNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEK--KKIIVF 193
            N    +  IA +LI KDP+NK  YEKN + +  +L +LDKE  S    + +  K I+  
Sbjct: 130 ENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTS 189

Query: 194 HEAYRYFASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252
              ++YF+  Y +       ++         + ++  K+   K S LF     D + + +
Sbjct: 190 EGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPMET 249

Query: 253 ITNDTGV---MSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294
           ++ D+G+        D        G   Y+ +M+   + I++  +
Sbjct: 250 VSKDSGIPIYSEIFTDSIAKKGKPGDS-YYAMMKWNLDKISEGLA 293


>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
           two (beta/ALFA)4 domains, metal transport; 1.70A
           {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
           2ogw_A
          Length = 284

 Score =  167 bits (422), Expect = 4e-42
 Identities = 83/279 (29%), Positives = 148/279 (53%), Gaps = 14/279 (5%)

Query: 26  VVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMES 85
           VV S+KP+  I S I  G+    +L+   +S H+YSLR S+   L+NAD++ W+G EME+
Sbjct: 2   VVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEA 61

Query: 86  FLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSE------------ADDLHLWL 133
           F+ KP+  L   +  VT++   D+  +L++  H    D +              ++HLWL
Sbjct: 62  FMQKPVSKL-PGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWL 120

Query: 134 NPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVF 193
           +P   +  A  I  +L++  P+++   + N ++F+ QL+  + ++ + L P++ K   VF
Sbjct: 121 SPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVF 180

Query: 194 HEAYRYFASHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252
           H+AY YF   + L+ +  F ++  +  GA  L  IR++++  K +C+F  P+F   ++ S
Sbjct: 181 HDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVES 240

Query: 253 ITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291
           +   T V    LDP G  I  G   Y + +  ++N  A 
Sbjct: 241 VARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYAS 279


>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; 2.60A {Bacillus subtilis}
          Length = 312

 Score =  159 bits (402), Expect = 8e-40
 Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 11/286 (3%)

Query: 16  SSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADI 75
           S+ ++   L VV +  P++     I++  G   LL+  +  PH++     +   +++AD+
Sbjct: 14  SADSKGDKLHVVTTFYPMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADL 73

Query: 76  IFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADD------L 129
             +    ME+++     S+ +  + V ++ S  +  +   +     HD    +       
Sbjct: 74  FVYNSEYMETWVPSAEKSMGQ-GHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDP 132

Query: 130 HLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKK 189
           H+WL+P+  Q     I  +++K+DP NK  YEKN +E+  +L  LDK   +  +  EKK+
Sbjct: 133 HVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKE 192

Query: 190 IIVFHEAYRYFASHYNLSIVTFPM-SHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSK 248
            I  H A+ Y A  Y L  V     S      AASL  +++      +  +++     SK
Sbjct: 193 FITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSK 252

Query: 249 IIRSITNDTGVMSAILDPEGMLIAEG---PELYFQLMRSMSNSIAK 291
           +  ++ ++ G  + +L+    L  E       Y  +M+   +++  
Sbjct: 253 VADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKD 298


>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal
           binding protein; 2.40A {Streptococcus pneumoniae}
          Length = 284

 Score =  138 bits (348), Expect = 1e-33
 Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 7/273 (2%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
           +++V S  PI+++V  +   +    ++   +   H +    ++   + +AD+  +    +
Sbjct: 11  MKIVTSFYPIYAMVKEVSGDLNDVRMIQSSSG-IHSFEPSANDIAAIYDADVFVYHSHTL 69

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSE----ADDLHLWLNPLNVQ 139
           ES+      +L K    V  +        +         D        D H WL+P    
Sbjct: 70  ESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAG 129

Query: 140 YIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYRY 199
             A +IA +L + D  +K  Y+KN + F  +  +L K+     +   +K  +  H A+ Y
Sbjct: 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSY 189

Query: 200 FASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTG 258
            A  + L+ +    +S         L  I+  + + K+  +F      SK+  ++   TG
Sbjct: 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTG 249

Query: 259 VMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291
           V    L+P           Y + +    + +A+
Sbjct: 250 VGLKTLNPLESDPQNDKT-YLENLEENMSILAE 281


>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
           systems, photosynthesis, cyanobacteria, disulfide bond,
           metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
          Length = 321

 Score =  134 bits (338), Expect = 2e-32
 Identities = 44/273 (16%), Positives = 106/273 (38%), Gaps = 12/273 (4%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
            +V+ +   +  +V  +         + +  +  H Y    S+ +  ++AD+I + G  +
Sbjct: 46  KKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNL 105

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143
           E +  + L ++    +VV       +         +    ++  + H W++P N      
Sbjct: 106 ERWFEQFLGNVKDVPSVVLTEGIEPIP-------IADGPYTDKPNPHAWMSPRNALVYVE 158

Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQ--PVEKKKIIVFHEAYRYFA 201
            I    ++ DP N   Y  N   +  QL  +D++L + L+  P  ++ ++    A+ Y A
Sbjct: 159 NIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLA 218

Query: 202 SHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV- 259
             Y +  +  +P++         ++ +  ++ ++ +  +F       K  + +   TG  
Sbjct: 219 RDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR 278

Query: 260 MSAILDPEGMLIAEGP-ELYFQLMRSMSNSIAK 291
               L  + +   EGP   +  L+   +  I  
Sbjct: 279 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 311


>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
           protein, ABC transporter; 1.80A {Treponema pallidum}
           SCOP: c.92.2.2 PDB: 1k0f_A
          Length = 313

 Score =  131 bits (331), Expect = 1e-31
 Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 17/301 (5%)

Query: 1   MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60
            +N         F     A  G   VV +I  I   V  I QG      L+     PH Y
Sbjct: 16  TENLYFQGAMGSFGSKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLY 75

Query: 61  SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120
           +    +   L NAD+I + G  +E+ + +    L     VV +S +  +           
Sbjct: 76  TATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVS-------QRL 128

Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
             +    D H+W +     Y    +   L K  P     + +  + ++ QL +LD  +  
Sbjct: 129 SLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRR 188

Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237
             Q +  E++ ++  H+A+ YF+  Y         +S +    A  ++ + + I   K+ 
Sbjct: 189 KAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLP 248

Query: 238 CLFYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAE-------GPELYFQLMRSMSNSIA 290
            +F       K + ++ +       ++   G L ++           Y  ++    ++I 
Sbjct: 249 AIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIV 308

Query: 291 K 291
            
Sbjct: 309 A 309


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 61/346 (17%), Positives = 117/346 (33%), Gaps = 137/346 (39%)

Query: 13  FILS---SVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALL---VKGASSPHEYSLRISE 66
           ++LS   S    G +Q+       H +V+  + G  TP  L   +KGA+  H  S  +  
Sbjct: 230 YLLSIPISCPLIGVIQLA------HYVVTAKLLGF-TPGELRSYLKGATG-H--SQGLVT 279

Query: 67  AMMLENAD--------------IIFWLGAE-MESFLVKPLHSLNKQSNVV--TLSH---- 105
           A+ +   D              ++F++G    E++   P  SL    +++  +L +    
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---PNTSL--PPSILEDSLENNEGV 334

Query: 106 -SPDLH-RILLRD---NH-----SHFHDSEADDLHLWL-N-PLNVQYIAHVIA------- 146
            SP L    L ++   ++     SH    +   + + L N   N+     V++       
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ--VEISLVNGAKNL-----VVSGPPQSLY 387

Query: 147 -----MELIKKDP---RNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYR 198
                +   K      +++I + + + +F N+   L      +  P        FH    
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--L-----PVASP--------FH---- 428

Query: 199 YFASHYNLSIVT--------------------FPMSHSVFMGAASLRNIRSKIISDKISC 238
              SH  L   +                     P+  + F G + LR +   I    + C
Sbjct: 429 ---SHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDG-SDLRVLSGSISERIVDC 482

Query: 239 LFYGP-------EFDSKIIRSITNDTGVMSAILDPEGMLIA---EG 274
           +   P       +F +  I  +    G  S +    G+L     +G
Sbjct: 483 IIRLPVKWETTTQFKATHI--LDFGPGGASGL----GVLTHRNKDG 522



 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 57/340 (16%), Positives = 97/340 (28%), Gaps = 143/340 (42%)

Query: 10  FLFFILSSVAR--AGS----LQVVVSI--------KPIHSIVSCIMQGIGTPALLVK--- 52
           FL ++ S V     G     L + ++           IH++ + ++Q   T  +  K   
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123

Query: 53  ----------GASSPHEYSLRISEAMMLENADI--IFWLG---------AEM-ESF---- 86
                           + +  +  A+   NA +  IF  G          E+ + +    
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--GGQGNTDDYFEELRDLYQTYH 181

Query: 87  -LVKPL-HSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWL-NP---LNVQY 140
            LV  L         +  L  +         D    F  ++  ++  WL NP    +  Y
Sbjct: 182 VLVGDLIKFS--AETLSELIRTTL-------DAEKVF--TQGLNILEWLENPSNTPDKDY 230

Query: 141 IAHV-IAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSI-------LQPVEKKKIIV 192
           +  + I+  LI                    + QL    H +         P E      
Sbjct: 231 LLSIPISCPLIG-------------------VIQL---AHYVVTAKLLGFTPGE------ 262

Query: 193 FHEAYRYFASHYNLSIVTFPMSHS------VFMGAAS-----LRNIRSKIISDKISCLFY 241
                    S+  L   T    HS      V +           ++R       I+ LF+
Sbjct: 263 -------LRSY--LKGAT---GHSQGLVTAVAIAETDSWESFFVSVR-----KAITVLFF 305

Query: 242 -G-------PE--FDSKIIR-SITNDTGVMSAILDPEGML 270
            G       P       I+  S+ N+ GV      P  ML
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGV------PSPML 339


>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
           2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
          Length = 511

 Score = 29.9 bits (67), Expect = 0.77
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 159 IYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYRYF 200
           + +K  E   ++   L +E+   +   + K I  + +A    
Sbjct: 332 VGDKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSI 373


>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
           calmodulin-binding, cell membrane, membrane,
           phosphoprotein, protein binding; 2.50A {Homo sapiens}
          Length = 193

 Score = 28.5 bits (63), Expect = 2.0
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 125 EADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEF-KNQLSQLDKEL 178
           E  D++   N     Y  H +++ L K     +I     + +F + +++ +  EL
Sbjct: 137 ETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDFTEEEINNMKTEL 191


>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
           multiprotein-pigment complex, photosynthesis; HET: CL1
           PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
           f.29.1.1 PDB: 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
          Length = 755

 Score = 28.3 bits (63), Expect = 2.2
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145
           +H   L  + +  +  +FH ++  +   WL +P  ++  A V+
Sbjct: 75  AHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKPSAQVV 117


>2a1d_D Staphylocoagulase; prothrombin activator, protein-protein complex,
           hydrolase; HET: DPN ARM NDG; 3.50A {Staphylococcus
           aureus}
          Length = 329

 Score = 27.9 bits (62), Expect = 2.7
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 123 DSEADDLHLW--LNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
            +   D +L   L  L  Q+I    A+++++        Y   E+E+K+   +L   +  
Sbjct: 20  GTLISDWYLKGRLTSLESQFIN---ALDILET-------YHYGEKEYKDAKDKLMTRILG 69

Query: 181 ILQPVEKKKIIVFHEAYRYFASHYNL 206
             Q + ++K + + E  + +  +   
Sbjct: 70  EDQYLLERKKVQYEEYKKLYQKYKEE 95


>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
           {Escherichia coli}
          Length = 505

 Score = 28.1 bits (62), Expect = 2.8
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 148 ELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEA 196
            L K       I  K  +   +    L +E+   ++  + K I  + +A
Sbjct: 306 VLNKAAEVISDIGNKVGDYLGDAYKSLAREIADDVKNFQGKTIRSYDDA 354


>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan
          sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A
          {Flavobacterium heparinium} SCOP: b.80.1.4 PDB: 1dbo_A*
          1ofl_A* 1ofm_A*
          Length = 506

 Score = 27.5 bits (60), Expect = 3.3
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1  MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIV 37
          M N L   +    +L +VA     QVV S + ++ +V
Sbjct: 3  MLNKLAGYLLPIMVLLNVAPCLG-QVVASNETLYQVV 38


>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
           multiprotein-pigment complex, photosynthesis; HET: CL1
           PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
           f.29.1.1 PDB: 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
          Length = 740

 Score = 27.5 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145
           SH   L  I L  + S FH +   +   W+ +P+N + IAH I
Sbjct: 48  SHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAI 90


>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
           protein folding, acetylation, ATP-binding,
           calmodulin-binding, chaperone, cytoplasm; HET: ATP;
           2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A*
           2qxl_A*
          Length = 675

 Score = 26.7 bits (58), Expect = 6.4
 Identities = 5/30 (16%), Positives = 14/30 (46%)

Query: 159 IYEKNEEEFKNQLSQLDKELHSILQPVEKK 188
           +Y++  +  K +     +EL S+   +  +
Sbjct: 594 LYDEGFDSIKAKYIAKYEELASLGNIIRGR 623


>1uzx_A VPS23, STP22, vacuolar protein sorting-associated protein VPS23;
           transport protein, transport protein/complex, UEV, E2
           variant, ubquitin, ESCRT-I; HET: MES; 1.85A
           {Saccharomyces cerevisiae} SCOP: d.20.1.2
          Length = 169

 Score = 26.4 bits (58), Expect = 7.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 178 LHSILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHS 216
           L  ++QP+       FH++     + ++L   T   +HS
Sbjct: 25  LFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHS 63


>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
           cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
           a.40.1.1
          Length = 203

 Score = 26.4 bits (58), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 125 EADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKN-QLSQLDKEL 178
           E  D++   N   V Y  H ++  L  +D    +I       F +  +S + + L
Sbjct: 136 ELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRL 190


>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
           structural genomics, structural genomics consortium,
           SGC, protein transport; 2.20A {Cryptosporidium parvum}
           SCOP: d.159.1.7
          Length = 215

 Score = 26.3 bits (57), Expect = 8.2
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 44  IGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTL 103
           I     +V G      ++       +     ++     ++       +   +   ++   
Sbjct: 77  ITKNVYIVSGDLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQW 136

Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWLNP 135
               D   ++    H+H       +  L+LNP
Sbjct: 137 QRRLDCDILV--TGHTHKLRVFEKNGKLFLNP 166


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,441,930
Number of extensions: 111491
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 29
Length of query: 294
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 202
Effective length of database: 3,462,782
Effective search space: 699481964
Effective search space used: 699481964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)