RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (294 letters) >3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A Length = 286 Score = 184 bits (467), Expect = 2e-47 Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 7/277 (2%) Query: 21 AGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLG 80 + VV S P++++ + + ++ GA H + +++ + +AD+ + Sbjct: 10 TQGMSVVTSFYPMYAMTKEVSGDLNDVRMIQSGAG-IHSFEPSVNDVAAIYDADLFVYHS 68 Query: 81 AEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD----DLHLWLNPL 136 +E++ +L K V + P + D H W +P+ Sbjct: 69 HTLEAWARDLDPNLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHTWTDPV 128 Query: 137 NVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEA 196 A IA EL + DP++K Y KN + FK + QL +E + V K + H A Sbjct: 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTA 188 Query: 197 YRYFASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITN 255 + Y A + L + +S L+ I+ + + +F + KI +I Sbjct: 189 FSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAK 248 Query: 256 DTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKN 292 TG L P G + Y + +R+ + + Sbjct: 249 STGAKVKTLSPLEAAP-SGNKTYLENLRANLEVLYQQ 284 >1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291 Score = 177 bits (449), Expect = 3e-45 Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 32/292 (10%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 + + VSI P + I + ++LV G + PH Y + + L A+ +G Sbjct: 3 MDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGF 62 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRD------------------------NHS 119 E ++ L + N ++ + + D Sbjct: 63 EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122 Query: 120 HFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELH 179 D H+WL+P V+ A IA EL + DP N+ YE N F +L +L++EL Sbjct: 123 AKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELG 182 Query: 180 SILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCL 239 ILQP+ ++K IVFH ++ YFA YNL + A L+ + + ++ + Sbjct: 183 QILQPLPQRKFIVFHPSWAYFARDYNLVQIPI-EVEGQEPSAQELKQLIDTAKENNLTMV 241 Query: 240 FYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291 F +F +K +I + G +LDP + +++++ IA Sbjct: 242 FGETQFSTKSSEAIAAEIGAGVELLDPLA-------ADWSSNLKAVAQKIAN 286 >3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A Length = 294 Score = 171 bits (433), Expect = 2e-43 Identities = 64/285 (22%), Positives = 114/285 (40%), Gaps = 7/285 (2%) Query: 16 SSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADI 75 + A++ L+VV + I + I +V PHEY +A NAD+ Sbjct: 10 AKTAKSDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSNADV 69 Query: 76 IFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNP 135 IF+ G +E L K + + + + +D H WLN Sbjct: 70 IFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGASEKGKEDPHAWLNL 129 Query: 136 LNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEK--KKIIVF 193 N + IA +LI KDP+NK YEKN + + +L +LDKE S + + K I+ Sbjct: 130 ENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTS 189 Query: 194 HEAYRYFASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252 ++YF+ Y + ++ + ++ K+ K S LF D + + + Sbjct: 190 EGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPMET 249 Query: 253 ITNDTGV---MSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 ++ D+G+ D G Y+ +M+ + I++ + Sbjct: 250 VSKDSGIPIYSEIFTDSIAKKGKPGDS-YYAMMKWNLDKISEGLA 293 >2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A Length = 284 Score = 167 bits (422), Expect = 4e-42 Identities = 83/279 (29%), Positives = 148/279 (53%), Gaps = 14/279 (5%) Query: 26 VVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMES 85 VV S+KP+ I S I G+ +L+ +S H+YSLR S+ L+NAD++ W+G EME+ Sbjct: 2 VVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEA 61 Query: 86 FLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSE------------ADDLHLWL 133 F+ KP+ L + VT++ D+ +L++ H D + ++HLWL Sbjct: 62 FMQKPVSKL-PGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWL 120 Query: 134 NPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVF 193 +P + A I +L++ P+++ + N ++F+ QL+ + ++ + L P++ K VF Sbjct: 121 SPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVF 180 Query: 194 HEAYRYFASHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252 H+AY YF + L+ + F ++ + GA L IR++++ K +C+F P+F ++ S Sbjct: 181 HDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVES 240 Query: 253 ITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291 + T V LDP G I G Y + + ++N A Sbjct: 241 VARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYAS 279 >2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} Length = 312 Score = 159 bits (402), Expect = 8e-40 Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 11/286 (3%) Query: 16 SSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADI 75 S+ ++ L VV + P++ I++ G LL+ + PH++ + +++AD+ Sbjct: 14 SADSKGDKLHVVTTFYPMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADL 73 Query: 76 IFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADD------L 129 + ME+++ S+ + + V ++ S + + + HD + Sbjct: 74 FVYNSEYMETWVPSAEKSMGQ-GHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDP 132 Query: 130 HLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKK 189 H+WL+P+ Q I +++K+DP NK YEKN +E+ +L LDK + + EKK+ Sbjct: 133 HVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKE 192 Query: 190 IIVFHEAYRYFASHYNLSIVTFPM-SHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSK 248 I H A+ Y A Y L V S AASL +++ + +++ SK Sbjct: 193 FITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSK 252 Query: 249 IIRSITNDTGVMSAILDPEGMLIAEG---PELYFQLMRSMSNSIAK 291 + ++ ++ G + +L+ L E Y +M+ +++ Sbjct: 253 VADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKD 298 >3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} Length = 284 Score = 138 bits (348), Expect = 1e-33 Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 7/273 (2%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 +++V S PI+++V + + ++ + H + ++ + +AD+ + + Sbjct: 11 MKIVTSFYPIYAMVKEVSGDLNDVRMIQSSSG-IHSFEPSANDIAAIYDADVFVYHSHTL 69 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSE----ADDLHLWLNPLNVQ 139 ES+ +L K V + + D D H WL+P Sbjct: 70 ESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAG 129 Query: 140 YIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYRY 199 A +IA +L + D +K Y+KN + F + +L K+ + +K + H A+ Y Sbjct: 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSY 189 Query: 200 FASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTG 258 A + L+ + +S L I+ + + K+ +F SK+ ++ TG Sbjct: 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTG 249 Query: 259 VMSAILDPEGMLIAEGPELYFQLMRSMSNSIAK 291 V L+P Y + + + +A+ Sbjct: 250 VGLKTLNPLESDPQNDKT-YLENLEENMSILAE 281 >1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2 Length = 321 Score = 134 bits (338), Expect = 2e-32 Identities = 44/273 (16%), Positives = 106/273 (38%), Gaps = 12/273 (4%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 +V+ + + +V + + + + H Y S+ + ++AD+I + G + Sbjct: 46 KKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNL 105 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143 E + + L ++ +VV + + ++ + H W++P N Sbjct: 106 ERWFEQFLGNVKDVPSVVLTEGIEPIP-------IADGPYTDKPNPHAWMSPRNALVYVE 158 Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQ--PVEKKKIIVFHEAYRYFA 201 I ++ DP N Y N + QL +D++L + L+ P ++ ++ A+ Y A Sbjct: 159 NIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLA 218 Query: 202 SHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV- 259 Y + + +P++ ++ + ++ ++ + +F K + + TG Sbjct: 219 RDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR 278 Query: 260 MSAILDPEGMLIAEGP-ELYFQLMRSMSNSIAK 291 L + + EGP + L+ + I Sbjct: 279 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 311 >1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A Length = 313 Score = 131 bits (331), Expect = 1e-31 Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 17/301 (5%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 +N F A G VV +I I V I QG L+ PH Y Sbjct: 16 TENLYFQGAMGSFGSKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLY 75 Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 + + L NAD+I + G +E+ + + L VV +S + + Sbjct: 76 TATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVS-------QRL 128 Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 + D H+W + Y + L K P + + + ++ QL +LD + Sbjct: 129 SLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRR 188 Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237 Q + E++ ++ H+A+ YF+ Y +S + A ++ + + I K+ Sbjct: 189 KAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLP 248 Query: 238 CLFYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAE-------GPELYFQLMRSMSNSIA 290 +F K + ++ + ++ G L ++ Y ++ ++I Sbjct: 249 AIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIV 308 Query: 291 K 291 Sbjct: 309 A 309 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 58.4 bits (141), Expect = 2e-09 Identities = 61/346 (17%), Positives = 117/346 (33%), Gaps = 137/346 (39%) Query: 13 FILS---SVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALL---VKGASSPHEYSLRISE 66 ++LS S G +Q+ H +V+ + G TP L +KGA+ H S + Sbjct: 230 YLLSIPISCPLIGVIQLA------HYVVTAKLLGF-TPGELRSYLKGATG-H--SQGLVT 279 Query: 67 AMMLENAD--------------IIFWLGAE-MESFLVKPLHSLNKQSNVV--TLSH---- 105 A+ + D ++F++G E++ P SL +++ +L + Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---PNTSL--PPSILEDSLENNEGV 334 Query: 106 -SPDLH-RILLRD---NH-----SHFHDSEADDLHLWL-N-PLNVQYIAHVIA------- 146 SP L L ++ ++ SH + + + L N N+ V++ Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ--VEISLVNGAKNL-----VVSGPPQSLY 387 Query: 147 -----MELIKKDP---RNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYR 198 + K +++I + + + +F N+ L + P FH Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--L-----PVASP--------FH---- 428 Query: 199 YFASHYNLSIVT--------------------FPMSHSVFMGAASLRNIRSKIISDKISC 238 SH L + P+ + F G + LR + I + C Sbjct: 429 ---SHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDG-SDLRVLSGSISERIVDC 482 Query: 239 LFYGP-------EFDSKIIRSITNDTGVMSAILDPEGMLIA---EG 274 + P +F + I + G S + G+L +G Sbjct: 483 IIRLPVKWETTTQFKATHI--LDFGPGGASGL----GVLTHRNKDG 522 Score = 46.5 bits (110), Expect = 7e-06 Identities = 57/340 (16%), Positives = 97/340 (28%), Gaps = 143/340 (42%) Query: 10 FLFFILSSVAR--AGS----LQVVVSI--------KPIHSIVSCIMQGIGTPALLVK--- 52 FL ++ S V G L + ++ IH++ + ++Q T + K Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123 Query: 53 ----------GASSPHEYSLRISEAMMLENADI--IFWLG---------AEM-ESF---- 86 + + + A+ NA + IF G E+ + + Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--GGQGNTDDYFEELRDLYQTYH 181 Query: 87 -LVKPL-HSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWL-NP---LNVQY 140 LV L + L + D F ++ ++ WL NP + Y Sbjct: 182 VLVGDLIKFS--AETLSELIRTTL-------DAEKVF--TQGLNILEWLENPSNTPDKDY 230 Query: 141 IAHV-IAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSI-------LQPVEKKKIIV 192 + + I+ LI + QL H + P E Sbjct: 231 LLSIPISCPLIG-------------------VIQL---AHYVVTAKLLGFTPGE------ 262 Query: 193 FHEAYRYFASHYNLSIVTFPMSHS------VFMGAAS-----LRNIRSKIISDKISCLFY 241 S+ L T HS V + ++R I+ LF+ Sbjct: 263 -------LRSY--LKGAT---GHSQGLVTAVAIAETDSWESFFVSVR-----KAITVLFF 305 Query: 242 -G-------PE--FDSKIIR-SITNDTGVMSAILDPEGML 270 G P I+ S+ N+ GV P ML Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGV------PSPML 339 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1 Length = 511 Score = 29.9 bits (67), Expect = 0.77 Identities = 7/42 (16%), Positives = 17/42 (40%) Query: 159 IYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYRYF 200 + +K E ++ L +E+ + + K I + +A Sbjct: 332 VGDKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSI 373 >3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193 Score = 28.5 bits (63), Expect = 2.0 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 125 EADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEF-KNQLSQLDKEL 178 E D++ N Y H +++ L K +I + +F + +++ + EL Sbjct: 137 ETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDFTEEEINNMKTEL 191 >1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 2o01_A* 2wsc_A* 2wse_A* 2wsf_A* Length = 755 Score = 28.3 bits (63), Expect = 2.2 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145 +H L + + + +FH ++ + WL +P ++ A V+ Sbjct: 75 AHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKPSAQVV 117 >2a1d_D Staphylocoagulase; prothrombin activator, protein-protein complex, hydrolase; HET: DPN ARM NDG; 3.50A {Staphylococcus aureus} Length = 329 Score = 27.9 bits (62), Expect = 2.7 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 123 DSEADDLHLW--LNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 + D +L L L Q+I A+++++ Y E+E+K+ +L + Sbjct: 20 GTLISDWYLKGRLTSLESQFIN---ALDILET-------YHYGEKEYKDAKDKLMTRILG 69 Query: 181 ILQPVEKKKIIVFHEAYRYFASHYNL 206 Q + ++K + + E + + + Sbjct: 70 EDQYLLERKKVQYEEYKKLYQKYKEE 95 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Length = 505 Score = 28.1 bits (62), Expect = 2.8 Identities = 9/49 (18%), Positives = 18/49 (36%) Query: 148 ELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEA 196 L K I K + + L +E+ ++ + K I + +A Sbjct: 306 VLNKAAEVISDIGNKVGDYLGDAYKSLAREIADDVKNFQGKTIRSYDDA 354 >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Length = 506 Score = 27.5 bits (60), Expect = 3.3 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIV 37 M N L + +L +VA QVV S + ++ +V Sbjct: 3 MLNKLAGYLLPIMVLLNVAPCLG-QVVASNETLYQVV 38 >1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 2o01_B* 2wsc_B* 2wse_B* 2wsf_B* Length = 740 Score = 27.5 bits (61), Expect = 3.6 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145 SH L I L + S FH + + W+ +P+N + IAH I Sbjct: 48 SHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAI 90 >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 Score = 26.7 bits (58), Expect = 6.4 Identities = 5/30 (16%), Positives = 14/30 (46%) Query: 159 IYEKNEEEFKNQLSQLDKELHSILQPVEKK 188 +Y++ + K + +EL S+ + + Sbjct: 594 LYDEGFDSIKAKYIAKYEELASLGNIIRGR 623 >1uzx_A VPS23, STP22, vacuolar protein sorting-associated protein VPS23; transport protein, transport protein/complex, UEV, E2 variant, ubquitin, ESCRT-I; HET: MES; 1.85A {Saccharomyces cerevisiae} SCOP: d.20.1.2 Length = 169 Score = 26.4 bits (58), Expect = 7.7 Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 178 LHSILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHS 216 L ++QP+ FH++ + ++L T +HS Sbjct: 25 LFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHS 63 >1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203 Score = 26.4 bits (58), Expect = 7.9 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 125 EADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKN-QLSQLDKEL 178 E D++ N V Y H ++ L +D +I F + +S + + L Sbjct: 136 ELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRL 190 >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Length = 215 Score = 26.3 bits (57), Expect = 8.2 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 2/92 (2%) Query: 44 IGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTL 103 I +V G ++ + ++ ++ + + ++ Sbjct: 77 ITKNVYIVSGDLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQW 136 Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWLNP 135 D ++ H+H + L+LNP Sbjct: 137 QRRLDCDILV--TGHTHKLRVFEKNGKLFLNP 166 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.136 0.392 Gapped Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,441,930 Number of extensions: 111491 Number of successful extensions: 446 Number of sequences better than 10.0: 1 Number of HSP's gapped: 426 Number of HSP's successfully gapped: 29 Length of query: 294 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 202 Effective length of database: 3,462,782 Effective search space: 699481964 Effective search space used: 699481964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)