RPSBLAST alignment for GI: 254780718 and conserved domain: TIGR01271
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490
Score = 48.0 bits (114), Expect = 2e-06
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68
+ + G +LQD++F+++ + V L+G GSGKST+ + ++ T G ++
Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV 1285
Query: 69 --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-------IG 118
+ + G +PQKV I T +L + S +++ ++ + V L
Sbjct: 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS----DEEIWKVAEEVGLKSVIEQFPD 1341
Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
K + + D LS G Q LA+++L K +L+LDEP +D ++L + +++Q
Sbjct: 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD---PVTLQIIRKTLKQ 1398
Query: 175 S-TGCGILLISH 185
S + C ++L H
Sbjct: 1399 SFSNCTVILSEH 1410