RPSBLAST alignment for GI: 254780718 and conserved domain: TIGR01842
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
Score = 104 bits (262), Expect = 2e-23
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 11 ISLSNTSF-HKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+S+ N + G K L+ I+F ++ E + +IGP+GSGKST+A+LI GI PT GSV+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 69 ---------------RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+H +GY+PQ V + T+ ++ RF + P + ++
Sbjct: 377 LDGADLKQWDRETFGKH----IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 113 RVNLIGK----YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
LI + Y+ I LSGG+ QR LA+AL P L+VLDEP +D GE +
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
L I +++ G +++I+H ++ D ++ L +
Sbjct: 493 LANAIKALKAR-GITVVVITHRPS-LLGCVDKILVLQD 528