RPSBLAST alignment for GI: 254780718 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 119 bits (301), Expect = 6e-28
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ + N + +IL ++ T+ EIV L+G NG+GK+T+ K I G++ P GS++
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 71 PQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+ I +GYVP+ ++T+E L L + + V ++
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
R L + + LSGGE Q +A+AL+ +P LL+LDEP +G+ ++E I +
Sbjct: 121 R--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
R G ILL+ N + D L R+ +G + +
Sbjct: 179 RD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222