RPSBLAST alignment for GI: 254780718 and conserved domain: cd03236
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255
Score = 68.4 bits (167), Expect = 2e-12
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP---------------------- 71
+ +++ L+GPNG GKST K++ G +KP +G P
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 72 --QLIVGYVPQKV-TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
+ V PQ V I + + L R + +++D++ L +RNI LS
Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLS 141
Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH 188
GGE QR +A AL R + DEP +D L+ LI + + +L++ H+L
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLA 200
Query: 189 MVMASTDTVICL 200
++ +D + CL
Sbjct: 201 VLDYLSDYIHCL 212