RPSBLAST alignment for GI: 254780718 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 86.5 bits (214), Expect = 6e-18
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 5/188 (2%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL- 90
+I +E++ ++GPNG GK+T K++ G++KP G ++ V Y PQ + + +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79
Query: 91 SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150
L+ +T + +I + + +R + +LSGGE QR +A L + ++ +L
Sbjct: 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139
Query: 151 DEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-- 208
DEP +D L ++I ++ ++ H++ M+ D +I G
Sbjct: 140 DEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVA 199
Query: 209 -PPQTIKD 215
PPQ+++
Sbjct: 200 NPPQSLRS 207