RPSBLAST alignment for GI: 254780718 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 76.9 bits (189), Expect = 4e-15
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80
+LQD++FT+ P E+ L+GP+GSGKST+ L+ +P G V K Q Y+
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 81 KVTIENTLPL-----------------SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
KV++ P+ S + + + L Y+
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-----GYDTE 143
Query: 124 IKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
+ + LSGG+ QR +A+AL+R P +L+LDE +D E + + + +
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--T 201
Query: 180 ILLISHNLHMV 190
+L+I+H L V
Sbjct: 202 VLVIAHRLSTV 212