RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc
uptake system ATP-binding component of ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
         (240 letters)



>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score =  233 bits (597), Expect = 3e-62
 Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 20/252 (7%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            P+I + N +       +L+DI+ +++  EI  LIGPNG+GKST+ K I G++KP+ G +
Sbjct: 2   MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 68  --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSS-----------RDDVL 108
                   KR  +L +GYVPQK +++ + P+++   + L                ++ V 
Sbjct: 62  KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121

Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
           + L+RV +    +R I +LSGG+ QR LLA+AL + P+LL+LDEP  G+D  G+  +Y+L
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRAT 228
           +  +RQ  G  +L+++H+L +VMA  D VICLN  +   GPP+ +       + FG    
Sbjct: 182 LKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSLA 240

Query: 229 EILAIHNHKHDH 240
             LA + H HDH
Sbjct: 241 HALAGYRHHHDH 252


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score =  190 bits (485), Expect = 2e-49
 Identities = 73/214 (34%), Positives = 128/214 (59%), Gaps = 18/214 (8%)

Query: 12  SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
            + + +    G+ +L+D++F +KP E + ++GPNG+GKST+ K I G++KPT GS++   
Sbjct: 1   EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 72  QLI------VGYVPQKVTIENTLPLSLMRFMTLSM-----------PSSRDDVLQILDRV 114
           + +      +GYVPQ+ +I+   P+S+   + + +            + +  V + L+RV
Sbjct: 61  KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120

Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
            L    +R I +LSGG+ QR LLA+AL++ P+LL+LDEP  G+D   +  +YEL+  +R+
Sbjct: 121 GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180

Query: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQG 208
             G  IL+++H+L +V+   D V+ LN  +   G
Sbjct: 181 -EGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score =  148 bits (374), Expect = 2e-36
 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
            ++ + N SF   G  IL D++F+I   EI  ++GPNGSGKST+ K + G++KP  G V 
Sbjct: 1   MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60

Query: 69  RHPQLI-----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD---VL 108
              + I           + YVPQ       +T+   + L     + L    S++D   V 
Sbjct: 61  LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120

Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
           + L+ + L    +R + +LSGGE QR L+A+AL ++  +L+LDEP   +D   ++ + EL
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRA 227
           +  + +  G  ++++ H+L++     D +I L + +I  QG P+ +        ++G  A
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA 240

Query: 228 TEI 230
             I
Sbjct: 241 DVI 243


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score =  145 bits (366), Expect = 2e-35
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 22/234 (9%)

Query: 9   PLISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            +I   N SF +      L+D++  I+  E V LIGPNGSGKST+ KL+ G++KPT G V
Sbjct: 2   RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 68  KRHPQLI------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108
                              VG V Q         T+E+ +   L   + L      + V 
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVA 120

Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
           + L+ V L    +R   +LSGG+ QR  +A  L   P +L+LDEP  G+D  G   L EL
Sbjct: 121 EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
           +  +++  G  I++++H+L +V+   D V+ L++ +I   G P  I ++AE + 
Sbjct: 181 LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELLL 234


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score =  142 bits (358), Expect = 1e-34
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 18/223 (8%)

Query: 16  TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------- 68
           T  +      L  ++F ++P EI  L+GPNG+GK+T+ K++ G++KPT G +        
Sbjct: 11  TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70

Query: 69  ---RHPQLIVGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
                 +  +GYVPQ+       T+   L     R   LS   + + + ++L+   L  K
Sbjct: 71  KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA-RLYGLSKEEAEERIEELLELFGLEDK 129

Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
            N+ ++ LSGG  QR  +A ALL  P LL+LDEP  G+D      ++EL+  + +  G  
Sbjct: 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189

Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
           ILL +H L       D VI LN+ +I  +G P+ +K+      
Sbjct: 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score =  139 bits (352), Expect = 6e-34
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 32/245 (13%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
           TPL+ +   S    G   + D++  ++P EIV LIGPNG+GK+T+  LITG  KP+ G+V
Sbjct: 2   TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61

Query: 68  KRHPQLIVGYVPQKV-------TIENTLPLSLMRFM----------------------TL 98
               + I G  P ++       T + T     +  +                        
Sbjct: 62  IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121

Query: 99  SMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRAL-LAKALLRKPNLLVLDEPLQGI 157
               +R+   ++L+ V L    +R   +LS G+ QR L +A+AL  +P LL+LDEP  G+
Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQ-QRRLEIARALATQPKLLLLDEPAAGL 180

Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
           +      L ELI  +R   G  ILLI H++ +VM   D ++ LN   +  +G P+ +++N
Sbjct: 181 NPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240

Query: 217 AEYIR 221
              I 
Sbjct: 241 PRVIE 245


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score =  138 bits (350), Expect = 1e-33
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
             L+ +   S    G ++L+DIN +++  E V ++GP+G GKST+ +LI G+ KPT G V
Sbjct: 1   MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 68  K------RHPQLIVGYVPQKVT-------IEN-TLPLSLMRFMTLSMPSSRDDVLQILDR 113
                    P   +GYV Q+         ++N  L L L      S   +R+   ++L+ 
Sbjct: 61  LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLEL 117

Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
           V L G  ++    LSGG  QR  +A+AL  +P LL+LDEP   +D      L + +  + 
Sbjct: 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177

Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNNR 203
           + T   +LL++H++   +   D V+ L+NR
Sbjct: 178 EETRKTVLLVTHDVDEAVYLADRVVVLSNR 207


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score =  136 bits (344), Expect = 5e-33
 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 19/198 (9%)

Query: 12  SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
            + N S    G  +L D++ +I+  EIV ++GPNG+GKST+ K + G++KP+ G +    
Sbjct: 1   EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60

Query: 72  QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
           + +    P++          L R +          V Q L+ + L    +R   +LSGGE
Sbjct: 61  KDLASLSPKE----------LARKIAY--------VPQALELLGLAHLADRPFNELSGGE 102

Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
            QR LLA+AL ++P +L+LDEP   +D   ++ L EL+  + +  G  ++++ H+L++  
Sbjct: 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162

Query: 192 ASTDTVICLNN-RICYQG 208
              D VI L + RI  QG
Sbjct: 163 RYADRVILLKDGRIVAQG 180


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score =  135 bits (341), Expect = 1e-32
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 29/223 (13%)

Query: 22  GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK 81
           G   L D++F+++P EI  LIGPNG+GK+T+  LI+G ++PT GSV    + I G  P +
Sbjct: 12  GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE 71

Query: 82  VT-------------------IEN--------TLPLSLMRFMTLSMPSSRDDVLQILDRV 114
           +                    +EN        T    L+         +R+   ++L+RV
Sbjct: 72  IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131

Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
            L    +R   +LS G+ +R  +A+AL   P LL+LDEP  G++      L ELI  +R+
Sbjct: 132 GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191

Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
             G  +LL+ H++ +VM+  D V  L+  R+  +G P  +++N
Sbjct: 192 R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  134 bits (338), Expect = 3e-32
 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 22/211 (10%)

Query: 12  SLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
            L N SF         L DI+ TIK  E V ++GPNGSGKST+ +L+ G++ PT G V  
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 70  HPQLI-----------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111
             + +           VG V Q         T+E  +   L   + L      + V + L
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEAL 119

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
           + V L G  +R+   LSGG+ QR  +A  L   P++L+LDEP  G+D  G   L EL+  
Sbjct: 120 ELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN 202
           ++   G  I++++H+L +++   D VI L +
Sbjct: 180 LKAE-GKTIIIVTHDLDLLLELADRVIVLED 209


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score =  129 bits (325), Expect = 9e-31
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%)

Query: 11  ISLSNTSFH----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
           + + N S            L+DI+ +++  E V L+GP+G GKST+ ++I G+ +PT G 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 67  VKRH------PQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV 114
           V         P    GYV Q+      +T+ + + L L     +    +R+   ++L+ V
Sbjct: 61  VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERAEELLELV 119

Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
            L G  N     LSGG  QR  LA+AL   P++L+LDEP   +D      L E +  + +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179

Query: 175 STGCGILLISHNLHMVMASTDTVICLNNR 203
            TG  +LL++H++   +   D V+ L+ R
Sbjct: 180 ETGKTVLLVTHDIDEAVFLADRVVVLSAR 208


>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score =  126 bits (318), Expect = 5e-30
 Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 8/199 (4%)

Query: 9   PLISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            ++   N S   +G + +L+D++F I   + + ++GPNG+GKST+ KL+ G + P  G+V
Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 68  KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVNLIGK-YNRNIK 125
           K    + +GY  Q    E     +++  ++   P   + +V   L R    G+   + + 
Sbjct: 380 KVGETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG 438

Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
            LSGGE  R LLAK LL+ PNLL+LDEP   +D     SL  L  ++    G  +LL+SH
Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE---SLEALEEALLDFEGT-VLLVSH 494

Query: 186 NLHMVMASTDTVICLNNRI 204
           + + +      +  + +++
Sbjct: 495 DRYFLDRVATRIWLVEDKV 513



 Score =  106 bits (267), Expect = 5e-24
 Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 40/236 (16%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
            +I+L N S       +L++++ T+ P E + L+G NG+GKST+ K++ G ++P  G V 
Sbjct: 2   SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61

Query: 69  RHPQLIVGYVPQKVTIENTLPL-------------SLMRFMTLSMPSSRDD--------- 106
           R   L VGY+ Q+  ++    +              L          +  D         
Sbjct: 62  RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121

Query: 107 VLQILDRVNL------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154
           +L+ LD   L                +R +  LSGG  +R  LA+ALL +P+LL+LDEP 
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181

Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQG 208
             +D      L + +          ++++SH+ + +      ++ L+      Y+G
Sbjct: 182 NHLDLESIEWLEDYLKRYP----GTVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score =  125 bits (316), Expect = 1e-29
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 22/236 (9%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            P++ + N S      + L+ ++  ++  EIV L+G NG+GK+T+ K I G+++P  G +
Sbjct: 1   APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 68  KRHPQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSR-DDVL 108
               + I            + YVP+      ++T+E  L L               ++V 
Sbjct: 61  IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120

Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
           ++  R  L  + N+    LSGGE Q   +A+AL+ +P LL+LDEP +G+       ++E 
Sbjct: 121 ELFPR--LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF 223
           I  +R+  G  ILL+  N    +   D    L N RI   G    +  + +    +
Sbjct: 179 IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  122 bits (307), Expect = 1e-28
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I L   +    G  +L+ ++  ++  EI+ +IGP+GSGKST+ +LI G+++P  G V   
Sbjct: 1   IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60

Query: 71  PQLI--------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
            + I              +G + Q       +T+   +   L     LS    R+ VL+ 
Sbjct: 61  GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120

Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
           L+ V L G  +    +LSGG  +R  LA+AL   P LL+ DEP  G+D      + +LI 
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA-EYIRLF 223
           S+++  G   ++++H+L    A  D +  L + +I  +G P+ ++ +    +R F
Sbjct: 181 SLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score =  121 bits (304), Expect = 2e-28
 Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 12  SLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
            + N SF +K G +IL D++  +   EI+ L G NG+GK+T+AK++ G+IK + GS+  +
Sbjct: 1   RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60

Query: 71  PQLI--------VGYVPQKV-------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
            + I        +GYV Q V       ++   L L L       + +  +    +L  ++
Sbjct: 61  GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-----LDAGNEQAETVLKDLD 115

Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
           L     R+   LSGG+ QR  +A ALL   +LL+ DEP  G+D+     + ELI  +  +
Sbjct: 116 LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL-AA 174

Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
            G  +++I+H+   +    D V+ L N
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLAN 201


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score =  119 bits (301), Expect = 6e-28
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 22/225 (9%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           + + N +      +IL  ++ T+   EIV L+G NG+GK+T+ K I G++ P  GS++  
Sbjct: 1   LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60

Query: 71  PQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
            + I            +GYVP+      ++T+E  L L           +  + V ++  
Sbjct: 61  GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120

Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
           R  L  +  +    LSGGE Q   +A+AL+ +P LL+LDEP +G+       ++E I  +
Sbjct: 121 R--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178

Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
           R   G  ILL+  N    +   D    L   R+  +G    +  +
Sbjct: 179 RD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score =  119 bits (300), Expect = 7e-28
 Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 24/226 (10%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            P + + N S     +  + DI+  IK  E VTL+GP+G GK+T+ ++I G  +P+ G +
Sbjct: 3   KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62

Query: 68  -------------KRHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108
                        KR     +G V Q       +T+E  +   L     L     +  V 
Sbjct: 63  LLDGEDITDVPPEKRP----IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
           + L+ V L G  +R    LSGG+ QR  LA+AL+ +P +L+LDEPL  +D      + + 
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
           +  +++  G   + ++H+    +A +D +  +N+ RI   G P+ I
Sbjct: 179 LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score =  118 bits (298), Expect = 1e-27
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I ++N       +  L DI+  IK  E+V L+GP+G+GKST+ ++I G+  P  G ++ +
Sbjct: 3   IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62

Query: 71  PQLI------------VGYVPQK------VTIENTLPLSL-MRFMTLSMPSSRDDVLQIL 111
            +++            VG+V Q       +T+ + +   L +R    S    R  V ++L
Sbjct: 63  GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
             V L G  +R    LSGG+ QR  LA+AL  +P +L+LDEP   +D      L   +  
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
           +    G   + ++H+    +   D V+ LN  RI   GPP  + D+
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score =  117 bits (295), Expect = 3e-27
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)

Query: 18  FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---------- 67
           + K     + D++  +   EI  L+G NG+GK+T  K++TG ++PT G+           
Sbjct: 10  YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69

Query: 68  KRHPQLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNR 122
           ++  +  +GY PQ   + + L     +RF      L     +++V  +L  + L  K N+
Sbjct: 70  RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129

Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
             + LSGG  ++  LA AL+  P++L+LDEP  G+D     ++++LI  VR+  G  I+L
Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIIL 187

Query: 183 ISHNLHMVMA-STDTVICLNNRICYQGPPQTIK 214
            +H++    A      I  + ++   G PQ +K
Sbjct: 188 TTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score =  117 bits (295), Expect = 3e-27
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           + L   S      + L D++ T++P E + L+GP+G GK+T+ +LI G+ +P  G +   
Sbjct: 1   LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60

Query: 71  PQLI---------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
            + +         +G V Q       +T+   +   L +   +     R  V ++L+ V 
Sbjct: 61  GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL-KLRGVPKAEIRARVRELLELVG 119

Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
           L G  NR   +LSGG+ QR  LA+AL R+P+LL+LDEPL  +D      L E +  +++ 
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179

Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
            G   + ++H+    +A  D +  +N 
Sbjct: 180 LGITTIYVTHDQEEALALADRIAVMNE 206


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score =  117 bits (294), Expect = 4e-27
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 24/259 (9%)

Query: 6   SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
           S  PLI +   +       IL  ++  +   EI+ ++G +GSGKST+ +LI G+++P  G
Sbjct: 4   SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63

Query: 66  SV----KRHPQLI----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD 105
            +    +  PQL           +G + Q+      +T+   +   L     L     R+
Sbjct: 64  EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE 123

Query: 106 DVLQILDRVNLIG-KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
            VL  L+ V L G   +    +LSGG  +R  LA+A+   P LL LDEP  G+D      
Sbjct: 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183

Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE-YIR- 221
           + ELI  +  + G  +++++H+L  ++   D V  L + ++  +G P+ +  + + ++R 
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQ 243

Query: 222 LFGTRATEILAIHNHKHDH 240
            F       +       D+
Sbjct: 244 FFNGIRDGPIPFRYPARDY 262


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score =  113 bits (285), Expect = 3e-26
 Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 25/210 (11%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74
           K L D++F+IK  E + L+G +GSGKST+A+ I G++KPT GS+    + +         
Sbjct: 19  KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78

Query: 75  -----VGYVPQ--------KVTIENTLPLSLMRFMTLSMPSSRDD-VLQILDRVNLIGKY 120
                +  V Q        ++TI   +   L     LS   +R + VL +L  V L  + 
Sbjct: 79  IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEV 138

Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
            NR   +LSGG+ QR  +A+AL   P LL+ DEP   +D   +  + +L+  +++  G  
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198

Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQG 208
           +L I+H+L +V    D V  +   +I  +G
Sbjct: 199 LLFITHDLGVVAKIADRVAVMYAGKIVEEG 228


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score =  113 bits (284), Expect = 6e-26
 Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 42/202 (20%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
           I + N S        L DI+ T++  EI  L+GPNG+GK+T+ K+I G++KP  G +K  
Sbjct: 1   IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60

Query: 69  -----RHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
                + P+ +   +GY+P++         SL   +T         V + L         
Sbjct: 61  GKDIKKEPEEVKRRIGYLPEEP--------SLYENLT---------VRENL--------- 94

Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
                 LSGG  QR  LA+ALL  P LL+LDEP  G+D       +EL+  +++  G  I
Sbjct: 95  -----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTI 148

Query: 181 LLISHNLHMVMASTDTVICLNN 202
           LL SH L       D V  LNN
Sbjct: 149 LLSSHILEEAERLCDRVAILNN 170


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score =  112 bits (283), Expect = 6e-26
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 28/225 (12%)

Query: 19  HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
           + NG K L+D++ +I P E V LIGP+G+GKST+ + + G+++PT GSV      I    
Sbjct: 10  YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69

Query: 75  ----------VGY-------VPQKVTIENTLPLSLMRFMTLSM------PSSRDDVLQIL 111
                     +G        + +   +EN L   L R  T            +   L  L
Sbjct: 70  GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
           +RV L+ K  +    LSGG+ QR  +A+AL+++P L++ DEP+  +D      + +L+  
Sbjct: 130 ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
           + +  G  +++  H + +     D ++ L + RI + GPP  + D
Sbjct: 190 INREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score =  112 bits (282), Expect = 8e-26
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 35/240 (14%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           I   N SF    +   +L+D++  I P E V ++G +GSGKST+ KL+ G+ KP  G + 
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531

Query: 69  -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                         +  VGYV Q   + +    S+   + L  P + D+  +I++   L 
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG---SIRENIALGNPEATDE--EIIEAAQLA 586

Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
           G           Y+  + +    LSGG+ QR  LA+ALL KP +L+LDE    +D   E 
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646

Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI-KDNAEYIRL 222
            + + +  + Q  G  +++I+H L  + ++   ++    +I  QG  + +      Y RL
Sbjct: 647 IILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARL 704


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score =  112 bits (282), Expect = 9e-26
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
           K +  ++F+IK  E + L+G +G GKST+ +LI G+ +PT G +    + I         
Sbjct: 27  KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK------- 79

Query: 84  IENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALL 142
                         LS    R+ VL++L++V L  +   R   +LSGG+ QR  +A+AL 
Sbjct: 80  --------------LSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125

Query: 143 RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
             P L+V DEP+  +D   +  +  L+  +++  G   L ISH+L +V   +D +  +  
Sbjct: 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185

Query: 203 -RICYQGPPQTIKDN 216
            +I   GP + +  N
Sbjct: 186 GKIVEIGPTEEVFSN 200


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score =  112 bits (281), Expect = 1e-25
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 27/227 (11%)

Query: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------------- 67
            K + D++F ++  E + L+G +GSGKST+A+++ G++ P+ GS+               
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363

Query: 68  --KRHPQLIV-----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
             +R  Q++         P ++T+ + L   L      S    R  V ++L+ V L  ++
Sbjct: 364 RLRRRIQMVFQDPYSSLNP-RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422

Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
            +R   +LSGG+ QR  +A+AL  +P LL+LDEP+  +D   +  +  L+  +++  G  
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482

Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223
            L ISH+L +V    D V  + + RI  +GP + + +N    Y R  
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529



 Score =  112 bits (281), Expect = 1e-25
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 40/246 (16%)

Query: 8   TPLISLSNTSFHKNGYK----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
           +PL+ + N +            ++D++F ++P EI+ ++G +GSGKST+A  + G++   
Sbjct: 3   SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62

Query: 64  I----GSVKRHPQLI---------------VGYVPQK--------VTIENTLPLSLMRFM 96
                G V    + +               +  + Q         +TI + +  +L    
Sbjct: 63  GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122

Query: 97  TLSMPSSRDDVLQILDRVNL-----IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLD 151
             S   +R   +++L++V L       +Y      LSGG  QR ++A AL  KP LL+ D
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPH---QLSGGMRQRVMIAMALALKPKLLIAD 179

Query: 152 EPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210
           EP   +D   +  + +L+  +++  G  +L I+H+L +V    D V+ +    I   GP 
Sbjct: 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239

Query: 211 QTIKDN 216
           + I  N
Sbjct: 240 EEILSN 245


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score =  111 bits (280), Expect = 1e-25
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 9   PLISLSNTSFHKNG-YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
           P+I + N SF  +    I + +NF I  +  V L+GPNG+GKST+ KLITG ++PTIG V
Sbjct: 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447

Query: 68  KRHPQLIVGYVPQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKY-NRNI 124
            RH    +    Q +  +  L  S + FM          +++  IL R  L G      +
Sbjct: 448 SRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM 507

Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
             LS G+ +R L A+  +++P+LL+LDEP   +D     +L E I    +  G G++L+S
Sbjct: 508 SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN---EFPG-GVVLVS 563

Query: 185 HNLHMV-MASTDTVICLNNRI 204
           H+  ++   + +  +C N  +
Sbjct: 564 HDFRLISQVAEEIWVCENGTV 584



 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 43/242 (17%)

Query: 4   ALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
           +  I+  + + + S   +G ++++D+   +       LIGPNGSGKST  + I G   P 
Sbjct: 69  SHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128

Query: 64  IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---------PSSRDDVLQI---- 110
              +  +  L     P   + +  +   +M                  + DD  +     
Sbjct: 129 PEHIDFYL-LSREIEP---SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDE 184

Query: 111 ----LDRVN-----------LIGKYN------RNIKDLSGGEFQRALLAKALLRKPNLLV 149
               LD ++           L G         + +KDLSGG   RA LA+AL +KP+LL+
Sbjct: 185 LYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244

Query: 150 LDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQ 207
           LDEP   +D    + L E +    +     ++++SH+   +      +I L+N+  I Y+
Sbjct: 245 LDEPTNHLDLEAIVWLEEYLAKYDRII---LVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301

Query: 208 GP 209
           G 
Sbjct: 302 GN 303


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score =  111 bits (280), Expect = 1e-25
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 30/202 (14%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------------R 69
           IL+ I+F ++  E + +IGP+GSGKST+A+L+ GI  PT GSV+               R
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410

Query: 70  HPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK----YNRNI 124
           H    +GY+PQ V + + T+  ++ RF   + P    +  ++     LI +    Y+  I
Sbjct: 411 H----IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466

Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
            +    LSGG+ QR  LA+AL   P L+VLDEP   +D  GE +L   I + +   G  +
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTV 525

Query: 181 LLISHNLHMVMASTDTVICLNN 202
           ++I+H     +AS D ++ L +
Sbjct: 526 VVIAHRPS-ALASVDKILVLQD 546


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score =  111 bits (278), Expect = 2e-25
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 30/251 (11%)

Query: 8   TPLISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
             +I + N S  +  G++ L+D+N  I   E+V +IGP+G+GKST+ + + G++ PT G 
Sbjct: 1   EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60

Query: 67  V--------------KRHPQLIVGY-------VPQKVTIENTLPLSLMR----FMTLSMP 101
           +               R  +  +G        VP+   +EN L   L           + 
Sbjct: 61  ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120

Query: 102 SSRD--DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
           S  D    L  L+RV ++ K  +    LSGG+ QR  +A+AL+++P +++ DEP+  +D 
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180

Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE 218
                + +++  + Q  G  +++  H + +     D +I L   RI + GP   + D   
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD-EA 239

Query: 219 YIRLFGTRATE 229
              ++G   +E
Sbjct: 240 LDEIYGNEISE 250


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score =  110 bits (276), Expect = 4e-25
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 30/235 (12%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           ISL N SF + +G   L D+N TIK  ++  L+G +G+GKST+  L+ G + PT G ++ 
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLI 117
           +   +           + +V Q   +      ++   + L+ P  S ++++  LD+  L+
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLL 437

Query: 118 ------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
                    +  I +    LSGG+ QR  LA+ALL   +LL+LDEP   +D   E  + +
Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497

Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
            +  + +     +L+I+H L    A  D ++ L+N R+  QG  + + +      
Sbjct: 498 ALQELAKQK--TVLVITHRLE-DAADADRIVVLDNGRLVEQGTHEELSEKQGLYA 549


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score =  110 bits (276), Expect = 4e-25
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 27/234 (11%)

Query: 8   TPLISLSNTSF----HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
             L+S+ N S      K  +  L +++  I+  E + ++G +GSGKST+A+L+ G+ KP+
Sbjct: 1   MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60

Query: 64  IGSVKRHPQLI------------VGYVPQKVTIENTL-PLSLMR------FMTLSMPSSR 104
            GS+    + +            V  V Q     ++L P   +            +  S+
Sbjct: 61  SGSILLDGKPLAPKKRAKAFYRPVQMVFQD--PYSSLNPRRTVGRILSEPLRPHGLSKSQ 118

Query: 105 DDVLQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
             + ++LD+V L   + +R   +LSGG+ QR  +A+AL+ +P LL+LDEP   +D   + 
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178

Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216
            +  L+  +++  G   L ISH+L +V    D +  + N +I   GP + +  +
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score =  110 bits (276), Expect = 5e-25
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           + L N S       +L D++  I+  EIV L+GP+GSGKST+ + I G+ +P  GS+   
Sbjct: 1   LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60

Query: 71  PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
            + +     +   +   + +    F      +  +++                   LSGG
Sbjct: 61  GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------------GLSGG 104

Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
           + QR  LA+AL   P++L+LDEP   +D      +  L+ S++   G  ++L++H+L   
Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164

Query: 191 MASTDTVICLNN 202
               D V+ L +
Sbjct: 165 ARLADRVVVLRD 176


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score =  108 bits (271), Expect = 1e-24
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
           + L N       +++L+D+N  I+  E V L+GP+G GKST+ ++I G+ +PT G +   
Sbjct: 4   LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63

Query: 68  ----------KRHPQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111
                     KR     +  V Q       +T+   +   L +   +        V ++ 
Sbjct: 64  GRDVTDLPPEKRG----IAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
             + L    NR    LSGG+ QR  LA+AL+RKP + +LDEPL  +D    + +   I  
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
           + +  G   + ++H+    M   D ++ +N+ RI   G P  + + 
Sbjct: 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score =  108 bits (271), Expect = 1e-24
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%)

Query: 12  SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
            + N SF   G   L +++ T+K  EIV L+GPNGSGKST+ + I G++KPT G +    
Sbjct: 1   EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60

Query: 72  QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
           +                              ++  + ++  R+  + +       LSGG+
Sbjct: 61  K----------------------------DIAKLPLEELRRRIGYVPQ-------LSGGQ 85

Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
            QR  LA+ALL  P+LL+LDEP  G+D      L EL+  + +  G  +++++H+  +  
Sbjct: 86  RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAE 144

Query: 192 ASTDTVICLNN 202
            + D VI L +
Sbjct: 145 LAADRVIVLKD 155


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score =  108 bits (271), Expect = 1e-24
 Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 21/217 (9%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------K 68
              K++  ++ ++K  EIV L+GPNG+GK+T   +I G++KP  G +             
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70

Query: 69  RHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
           +  +L +GY+PQ      K+T+E  + L+++    LS     + + ++L+  ++      
Sbjct: 71  KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLEELLEEFHITHLRKS 129

Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
               LSGGE +R  +A+AL   P  L+LDEP  G+D      + ++I  ++   G G+L+
Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLI 188

Query: 183 ISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAE 218
             HN+   ++ TD   I    ++  +G P+ I  N  
Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score =  108 bits (271), Expect = 2e-24
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 30/234 (12%)

Query: 17  SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76
           S+       L+D++ TI   E+V ++GP+G GK+T+  LI G + P+ GS++ + + I G
Sbjct: 12  SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71

Query: 77  -------------YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
                         +P    I+N     L +   +     R+   Q+L  V L G  ++ 
Sbjct: 72  PGAERGVVFQNEALLPWLNVIDNV-AFGL-QLRGIEKAQRREIAHQMLALVGLEGAEHKY 129

Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
           I  LSGG  QR  +A+AL  +P LL+LDEP   +D      + EL+  + Q TG  +LLI
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189

Query: 184 SHNLHMVMASTDTVICL---------------NNRICYQGPPQTIKDNAEYIRL 222
           +H++   +     ++ L                 R     P + IK + E+I +
Sbjct: 190 THDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEPSRAIKSDPEFIAM 243


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score =  107 bits (270), Expect = 2e-24
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 17/222 (7%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I L N S    G+  L  ++  IK  E  TL+GP+G GK+T+ +LI G   PT G +   
Sbjct: 1   IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60

Query: 71  PQLIVGYVPQK---------------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
            + I    P K               +T+   +   L R   L     ++ V + LD V 
Sbjct: 61  GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEALDLVQ 119

Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
           L G  NR    LSGG+ QR  +A+AL+ +P +L+LDEPL  +D      +   +  +++ 
Sbjct: 120 LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179

Query: 176 TGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
            G   + ++H+    +  +D +  +N  +I   G P+ I + 
Sbjct: 180 LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score =  107 bits (270), Expect = 2e-24
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 53/207 (25%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           I   N SF        +L+D++ TIKP E V ++GP+GSGKST+ KL+  +  PT G + 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 69  RHPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                +           + YVPQ   +                                 
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFL--------------------------------- 87

Query: 118 GKYNRNIKD--LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
             ++  I++  LSGG+ QR  +A+ALLR P +L+LDE    +D   E  + E + ++ + 
Sbjct: 88  --FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK- 144

Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
            G  +++I+H L  +  + D +I L++
Sbjct: 145 -GKTVIVIAHRLSTIRDA-DRIIVLDD 169


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score =  107 bits (269), Expect = 2e-24
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 21/227 (9%)

Query: 10  LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           +I   N S      K + D+N TI+  E + LIGP+GSGK+T  K+I  +I+PT G +  
Sbjct: 1   MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60

Query: 70  HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
             + I           +GYV Q++      T+   +     + +       +    ++LD
Sbjct: 61  DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-KLLGWDKERIKKRADELLD 119

Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
            V L   +Y +R   +LSGG+ QR  +A+AL   P +L++DEP   +D      L E I 
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
            +++  G  I+ ++H++   +   D +  ++   I     P  I  N
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score =  107 bits (269), Expect = 3e-24
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 27/205 (13%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP------ 79
           L+ I+FTI+  EIV  IGPNG+GK+T  K+++G+++PT G V+     + G VP      
Sbjct: 37  LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR-----VAGLVPWKRRKK 91

Query: 80  ----------QKVTIENTLP----LSLMRFM-TLSMPSSRDDVLQILDRVNLIGKYNRNI 124
                     QK  +   LP      L+  +  L     +  + ++ + ++L    +  +
Sbjct: 92  FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151

Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
           + LS G+  RA +A ALL +P +L LDEP  G+D   + ++   +    +  G  +LL S
Sbjct: 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211

Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208
           H +  + A    V+ ++  R+ Y G
Sbjct: 212 HYMKDIEALARRVLVIDKGRLLYDG 236


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score =  107 bits (269), Expect = 3e-24
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 26/226 (11%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63
           PLI L N S  +NG KIL D+++ + P E   ++GPNG+GK+T+  L+TG   P+     
Sbjct: 30  PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89

Query: 64  -----IGSVKRHPQL--IVGYVPQKVTI-----ENTLPL-------SLMRFMTLSMPSSR 104
                 G  +   +L   +G V  ++       E    +       S+  +         
Sbjct: 90  LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149

Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
                +L+ +      +R    LS GE +R L+A+AL++ P LL+LDEP QG+D      
Sbjct: 150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209

Query: 165 LYELITSVRQS-TGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
           L   +  +  S     +L ++H+   +       + L    +  QG
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score =  106 bits (267), Expect = 4e-24
 Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 25/245 (10%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            PL+ L   S    G K L  ++ T++P E+  L+G NG+GKST+ K+++G+  P  G +
Sbjct: 6   PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Query: 68  KRHPQLIVGYVPQK------VTIENTLPLS---------------LMRFMTLSMPSSRDD 106
               + +    P+        T+   L L                  RF  +   + R  
Sbjct: 66  LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125

Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS-L 165
             ++L R+ L    +  + DLS  + Q   +A+AL     +L+LDEP   +    E   L
Sbjct: 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT-VKETERL 184

Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
           ++LI  ++   G  I+ ISH L  V    D +  L + R+    P        E +RL  
Sbjct: 185 FDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMV 243

Query: 225 TRATE 229
            R  E
Sbjct: 244 GRELE 248



 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 27/203 (13%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQ----L 73
           ++D++FT++  EI+ + G  G+G++ +A+ + G    + G +         R P+     
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334

Query: 74  IVGYVP----------QKVTIENTLPLSLMRFMT---LSMPSSRDDVLQILDRVNL-IGK 119
            + YVP               EN    SL RF     +     R    + + R+ +    
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394

Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
             + I  LSGG  Q+ +LA+ L   P +L+LDEP +GID   +  +Y LI  +    G  
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKA 453

Query: 180 ILLISHNLHMVMASTDTVICLNN 202
           IL+IS  L  ++  +D ++ +  
Sbjct: 454 ILMISSELPELLGLSDRILVMRE 476


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
           component of the protease secretion system PrtD, a
           60-kDa integral membrane protein sharing 37% identity
           with HlyB, the ABC component of the alpha-hemolysin
           secretion pathway, in the C-terminal domain.  They
           export degradative enzymes by using a type I protein
           secretion system and  lack an N-terminal signal peptide,
           but contain a C-terminal secretion signal.  The Type I
           secretion apparatus is made up of three components, an
           ABC transporter, a membrane fusion protein (MFP), and an
           outer membrane protein (OMP).  For the HlyA transporter
           complex, HlyB (ABC transporter) and HlyD (MFP) reside in
           the inner membrane of E. coli.  The OMP component is
           TolC, which is thought to interact with the MFP to form
           a continuous channel across the periplasm from the
           cytoplasm to the exterior.  HlyB belongs to the family
           of ABC transporters, which are ubiquitous, ATP-dependent
           transmembrane pumps or channels.  The spectrum of
           transport substrates ranges from inorganic ions,
           nutrients such as amino acids, sugars, or peptides,
           hydrophobic drugs, to large polypeptides, such as HlyA..
          Length = 173

 Score =  105 bits (264), Expect = 9e-24
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 48/205 (23%)

Query: 11  ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           + + N SF   G +  +L++++F+I+P E + +IGP+GSGKST+A+LI G+++PT G V+
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 69  -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                            VGY+PQ                        DD L         
Sbjct: 61  LDGADISQWDPNELGDHVGYLPQ------------------------DDEL-------FS 89

Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
           G    NI  LSGG+ QR  LA+AL   P +LVLDEP   +D  GE +L + I +++ + G
Sbjct: 90  GSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAG 146

Query: 178 CGILLISHNLHMVMASTDTVICLNN 202
              ++I+H     +AS D ++ L +
Sbjct: 147 ATRIVIAHRPE-TLASADRILVLED 170


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score =  105 bits (264), Expect = 1e-23
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 24/202 (11%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------KRHPQLIV 75
           ++L DI+  +K  EI   +GPNG+GK+T  K+I G+IKP  G +        K    L  
Sbjct: 14  RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR 73

Query: 76  --------GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127
                   G+ P     EN      +R +   +   +  + ++LD V L     + +K  
Sbjct: 74  IGALIEAPGFYPNLTAREN------LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF 127

Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
           S G  QR  +A ALL  P+LL+LDEP  G+D  G   L ELI S+R   G  +L+ SH L
Sbjct: 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL 186

Query: 188 HMVMASTDTVICLNN-RICYQG 208
             +    D +  +N  ++  +G
Sbjct: 187 SEIQKVADRIGIINKGKLIEEG 208


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score =  105 bits (264), Expect = 1e-23
 Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 21/215 (9%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG----- 65
           + L N +      + L  ++ T+    +  L+GPNG+GK+T+ +++  +  P+ G     
Sbjct: 1   LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59

Query: 66  --SVKRHPQLI---VGYVPQKVTIENTLP-LSLMRFMTL--SMPSSRDD--VLQILDRVN 115
              V + PQ +   +GY+PQ+  +         + ++     +PS      V ++L+ VN
Sbjct: 60  GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119

Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE-LSLYELITSVRQ 174
           L  +  + I  LSGG  +R  +A+AL+  P++L++DEP  G+D P E +    L+     
Sbjct: 120 LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEERIRFRNLL--SEL 176

Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
                ++L +H +  V +  + V  LN  ++ ++G
Sbjct: 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score =  105 bits (264), Expect = 1e-23
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 20  KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
               + L+ ++ +I+  E V ++GP+GSGKST+  ++ G+ +PT G V+     I     
Sbjct: 14  GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73

Query: 75  ----------VGYVPQKVTIENTLP-----LSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
                     +G+V Q   +   L         +    +     R+   ++L+RV L  +
Sbjct: 74  KELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133

Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
            N    +LSGG+ QR  +A+AL   P +++ DEP   +D      + EL+  + +  G  
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193

Query: 180 ILLISHN 186
           I++++H+
Sbjct: 194 IVVVTHD 200


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score =  104 bits (262), Expect = 2e-23
 Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 50/193 (25%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I L N S    G  +L+DI+ TI P + + L+G NG+GKST+ KLI G ++P  G V   
Sbjct: 1   IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60

Query: 71  PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
             + +GY  Q                                              LSGG
Sbjct: 61  STVKIGYFEQ----------------------------------------------LSGG 74

Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
           E  R  LAK LL  PNLL+LDEP   +D     +L E +    +     ++L+SH+ + +
Sbjct: 75  EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSHDRYFL 130

Query: 191 MASTDTVICLNNR 203
                 +I L + 
Sbjct: 131 DQVATKIIELEDG 143


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score =  103 bits (259), Expect = 4e-23
 Identities = 58/237 (24%), Positives = 117/237 (49%), Gaps = 23/237 (9%)

Query: 9   PLISLSNTSFHK--NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
            + +L   +  K     K++ D++  +   EIV L+GPNG+GK+T   +I G+++P  G 
Sbjct: 1   DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60

Query: 67  V------------KRHPQLIVGYVPQKVTI-------ENTLPLSLMRFMTLSMPSSRDDV 107
           +             +  +L +GY+PQ+ +I       +N + +  +R   L     ++++
Sbjct: 61  ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120

Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
             +L+  ++    +     LSGGE +R  +A+AL   P  ++LDEP  G+D    + +  
Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180

Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAEYIRLF 223
           +I  ++   G G+L+  HN+   +   D   I  + ++  +G P+ I +N +  R++
Sbjct: 181 IIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score =  103 bits (259), Expect = 4e-23
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 15/193 (7%)

Query: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLI-----V 75
              L DI+F+++  EI  L+GPNG+GK+T  ++I GII P  G V     P  I     +
Sbjct: 13  VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72

Query: 76  GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
           GY+P       K+ + + L + L +   L    +R  + + L+R+ L    N+ +++LS 
Sbjct: 73  GYLPEERGLYPKMKVIDQL-VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131

Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
           G  Q+     A++  P LL+LDEP  G+D      L ++I  + ++ G  ++L +H + +
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMEL 190

Query: 190 VMASTDTVICLNN 202
           V    D V+ LN 
Sbjct: 191 VEELCDRVLLLNK 203


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score =  103 bits (258), Expect = 4e-23
 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 32/239 (13%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I   N +F +  G  +L+D++FTI   + V ++GP+GSGKSTI +L+      + GS+  
Sbjct: 1   IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL------QILD 112
             Q I           +G VPQ   + N      +R+      ++ ++V+      QI D
Sbjct: 61  DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHD 118

Query: 113 RV-NLIGKYN-----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
           ++      Y+     R +K LSGGE QR  +A+A+L+ P +L+LDE    +D   E  + 
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP-QTIKDNAEYIRLF 223
             +  V  S G   ++I+H L  ++ + D +I L + RI  +G   + +     Y  ++
Sbjct: 178 AALRDV--SKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score =  103 bits (258), Expect = 5e-23
 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 27/204 (13%)

Query: 10  LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
           +I   N S  +  G + L+D++F I   E V L GP+G+GKST+ KLI G  +PT G + 
Sbjct: 1   MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60

Query: 68  -----------KRHPQL--IVGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDD 106
                      +  P L   +G V       P +   EN  LP   +R +       R  
Sbjct: 61  VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP---LRVIGKPPREIRRR 117

Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
           V ++LD V L  K       LSGGE QR  +A+A++ +P +L+ DEP   +D      + 
Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177

Query: 167 ELITSVRQSTGCGILLISHNLHMV 190
            L   + +  G  +L+ +H+L +V
Sbjct: 178 RLFEEINR-LGTTVLMATHDLELV 200


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score =  103 bits (257), Expect = 6e-23
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 18/230 (7%)

Query: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIV 75
            K + +I+F + P EI  L+GPNG+GK+T  ++I G+++PT G +        +  +  +
Sbjct: 15  KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI 74

Query: 76  GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
           GY+P       K+T+E+ L   L     +     +  +   L+R+ ++GK  + IK+LS 
Sbjct: 75  GYLPEERGLYPKMTVEDQL-KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSK 133

Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
           G  Q+     A++ +P LL+LDEP  G+D      L + I  +++  G  I+  SH +  
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEH 192

Query: 190 VMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF--GTRATEILAIHNH 236
           V    D ++ L   +    G  + I+ +    RL      + E LA    
Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPG 242


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score =  102 bits (256), Expect = 7e-23
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 30/246 (12%)

Query: 10  LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           +I   N S+   G ++L  ++  ++P E++ ++GPNG+GKST+ K ++G + P  G V  
Sbjct: 1   MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60

Query: 70  HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVL-QIL 111
           +   +              +PQ        T++  + +  +   +   P   + +  Q L
Sbjct: 61  NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLR------KPNLLVLDEPLQGIDFPGELSL 165
              +L G   R+ + LSGGE QR  LA+ L +          L LDEP   +D   +   
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180

Query: 166 YELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
             L    RQ    G  +L + H+L++     D ++ L+  R+   G PQ +  +    R+
Sbjct: 181 LRL---ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237

Query: 223 FGTRAT 228
           +G    
Sbjct: 238 YGADIR 243


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score =  102 bits (255), Expect = 1e-22
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 31/217 (14%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63
           P + +   +    G     D++ ++K  EI  L+G NG+GKST+ K++ G+ +P      
Sbjct: 3   PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62

Query: 64  ------------------IGSVKRHPQLIVGYVPQKVTIEN-TLPLSLMRFMTLSMPSSR 104
                             IG V +H  L    VP     EN  L L   +   +    +R
Sbjct: 63  VDGKEVRIKSPRDAIRLGIGMVHQHFML----VPTLTVAENIILGLEPSKGGLIDRRQAR 118

Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL- 163
             + ++ +R  L    +  + DLS GE QR  + KAL R   LL+LDEP   +  P E  
Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEAD 177

Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
            L+E++  +    G  I+ I+H L  VMA  D V  L
Sbjct: 178 ELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVL 213



 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 31/218 (14%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------KRHPQ 72
           ++D++F ++  EIV + G  G+G+S + + I+G+ KP  G +             +   +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333

Query: 73  LIVGYVPQ-KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI------- 124
           L + YVP+ +      L LSL   + L     +            I K+ R +       
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393

Query: 125 --------KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
                   + LSGG  Q+ +LA+ L R+P+LL+  +P +G+D      ++E +  +R + 
Sbjct: 394 APSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA- 452

Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
           G  +LLIS +L  ++  +D +  +   RI    PP+  
Sbjct: 453 GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score =  101 bits (253), Expect = 2e-22
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 35/234 (14%)

Query: 17  SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76
              +   + +QDI+F I   EIV  +G NG+GKST  K++TG++ PT G V+     + G
Sbjct: 31  HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR-----VNG 85

Query: 77  YVP----------------QKVTIENTLP----LSLMRFMTLSMPSSR-----DDVLQIL 111
             P                QK+ +   LP    L +++ +   +P        D + +IL
Sbjct: 86  KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-EIPDDEFAERLDFLTEIL 144

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
           D   L G     ++ LS G+  RA LA ALL  P +L LDEP  G+D   + ++ E +  
Sbjct: 145 D---LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
             +     +LL +H    +    D V+ ++  ++ + G    +++     + F 
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score =  101 bits (253), Expect = 2e-22
 Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 22/234 (9%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
            +I + N S      ++L+ I+ +++  E+V +IGP+GSGKST+ + + G+ +P  GS+ 
Sbjct: 1   MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60

Query: 69  RHPQLI------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
              + +            VG V       P    +EN + L+ ++   LS   +R+  L+
Sbjct: 61  VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN-VTLAPVKVKKLSKAEAREKALE 119

Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
           +L++V L  K +     LSGG+ QR  +A+AL   P +++ DEP   +D      + +++
Sbjct: 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179

Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
             + +  G  +++++H +       D VI ++  +I  +GPP+   DN +  R 
Sbjct: 180 KDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score =  101 bits (253), Expect = 2e-22
 Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 16/210 (7%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-------SVKRHPQL 73
             ++ ++ ++F ++  EI  L+GPNG+GK+T  K++T ++KPT G        V R P+ 
Sbjct: 11  GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70

Query: 74  I---VGYVPQKVTIENTLP----LSLM-RFMTLSMPSSRDDVLQILDRVNLIGKYNRNIK 125
           +   +G V Q +++++ L     L +  R   +     R+ + ++LD V L+   +R +K
Sbjct: 71  VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130

Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
             SGG  +R  +A++L+ +P +L LDEP  G+D      ++E I  +++  G  ILL +H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190

Query: 186 NLHMVMASTDTVICLNN-RICYQGPPQTIK 214
            +       D V  +++ RI  +G P+ +K
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score =  100 bits (250), Expect = 4e-22
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 28/207 (13%)

Query: 20  KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
               + L+D+N  I+  E V ++GP+GSGKST+  L+ G+ KPT G V  + + +     
Sbjct: 15  GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE 74

Query: 75  ----------VGYVPQK-------VTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
                     +G+V Q          +EN  LPL +      S    +    ++L+ + L
Sbjct: 75  KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGL 131

Query: 117 IGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
             +   +   +LSGG+ QR  +A+AL+  P +++ DEP   +D      + EL+  + + 
Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191

Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
            G  I++++H+  +     D VI L +
Sbjct: 192 RGKTIIMVTHDPELA-KYADRVIELKD 217


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score = 99.9 bits (249), Expect = 6e-22
 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 38/227 (16%)

Query: 11  ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
           I   N SF     +I  L +++ TI+  E V +IG  GSGKST+ KL+ G+ KPT GSV 
Sbjct: 3   IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62

Query: 68  -------KRHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                  +  P  +   +GYVPQ VT+      +L   +TL  P + D+  +IL    L 
Sbjct: 63  LDGTDIRQLDPADLRRNIGYVPQDVTLFYG---TLRDNITLGAPLADDE--RILRAAELA 117

Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
           G            +  I +    LSGG+ Q   LA+ALL  P +L+LDEP   +D   E 
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177

Query: 164 SLYE-LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
            L E L   +   T   +++I+H   + +   D +I +++ RI   G
Sbjct: 178 RLKERLRQLLGDKT---LIIITHRPSL-LDLVDRIIVMDSGRIVADG 220


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 34/232 (14%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-----PTIG 65
           I L + + +      L+DI+  I   EI  LIGP+G GKST+ +L+  +       P  G
Sbjct: 1   IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60

Query: 66  SVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMTL--------SMPSSR 104
            V    + I             VG V QK    N  P S+   +                
Sbjct: 61  EVLLDGKDIYDLDVDVLELRRRVGMVFQK---PNPFPGSIYDNVAYGLRLHGIKLKEELD 117

Query: 105 DDVLQILDRVNLIGKYNRNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
           + V + L +  L  +    +    LSGG+ QR  LA+AL  +P +L+LDEP   +D    
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177

Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVM-ASTDTVICLNNRICYQGPPQTI 213
             + ELI  +++     I++++HN+      +  T   LN R+   GP + I
Sbjct: 178 AKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
           I + N S     +  L D++  I   E+V L+GP+GSGK+T+ +LI G+ +P  G++   
Sbjct: 3   IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62

Query: 68  -----KRHPQ-LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSS---RDDVLQILD 112
                    Q   VG+V Q       +T+ + +   L        P     R  V ++L 
Sbjct: 63  GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122

Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
            V L    +R    LSGG+ QR  LA+AL  +P +L+LDEP   +D      L   +  +
Sbjct: 123 LVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182

Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
                   + ++H+    +   D V+ +N  RI   G P  + D+
Sbjct: 183 HDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score = 97.4 bits (242), Expect = 3e-21
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 30/238 (12%)

Query: 11  ISLSNTSFH-KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I   N SF       +L+DI+F+I+P E V ++GP+GSGKST+ KL+  +  PT G +  
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRV--- 114
               I           +G V Q   + +    ++   + L  P  + +++ + L      
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG---TIRENIALGRPDATDEEIEEALKLANAH 445

Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
               NL   Y+  +     +LSGG+ QR  +A+ALLR P +L+LDE    +D   E  + 
Sbjct: 446 EFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRLF 223
           + +  + +  G   L+I+H L  +  +   ++  N RI  +G  +  +     Y RL+
Sbjct: 506 DALKKLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 97.2 bits (242), Expect = 4e-21
 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)

Query: 32  TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS 91
            I   E++ ++GPNG GK+T  KL+ G+IKP  GS      L V Y PQ   I      +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQY--ISPDYDGT 417

Query: 92  LMRFMTLSMPSSRDD---VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
           +   +  ++ S+        +I+  +NL     R + +LSGGE QR  +A AL R+ +L 
Sbjct: 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477

Query: 149 VLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
           +LDEP   +D    + + ++I    ++     L++ H+++M+   +D +I
Sbjct: 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527



 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 30/222 (13%)

Query: 3   NALSITPL-ISLSNTSFHK---NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
           +A+SI  L   L     H+   NG+K+ +    T +P ++V ++GPNG GKST  K++ G
Sbjct: 65  DAISIVNLPEELEEEVVHRYGVNGFKLYRLP--TPRPGKVVGILGPNGIGKSTALKILAG 122

Query: 59  IIKPTIGSVKRHP--QLIVGY-------------------VPQKVTIENTLPLSLMRFMT 97
            +KP +G  +  P    ++                        K    + +P  +   + 
Sbjct: 123 ELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG 182

Query: 98  --LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
             L     R    ++++R+ L    +R++ +LSGGE QR  +A ALLR  ++   DEP  
Sbjct: 183 ELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242

Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTV 197
            +D    L+   +I  + +  G  ++++ H+L ++   +D V
Sbjct: 243 YLDIRQRLNAARVIRELAE-DGKYVIVVEHDLAVLDYLSDFV 283


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score = 96.9 bits (241), Expect = 4e-21
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 17/200 (8%)

Query: 28  DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81
             + T+   EIV ++GP+G+GKST+  LI G   P  G +  +        P +      
Sbjct: 17  RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76

Query: 82  ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
                    +T+   + L L   + L+    R+ V     +V L G   R   +LSGG+ 
Sbjct: 77  FQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135

Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
           QR  LA+ L+R+  +L+LDEP   +D      +  L++ +       +L+++H+      
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195

Query: 193 STDTVICLNN-RICYQGPPQ 211
             D V+ L+N RI  QG  Q
Sbjct: 196 IADRVVFLDNGRIAAQGSTQ 215


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 96.4 bits (240), Expect = 6e-21
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 17/204 (8%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------VG 76
           L++++  ++  +   ++GP GSGKS + + I G IKP  G +  + + I         + 
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74

Query: 77  YVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
           YVPQ       +T+   +    ++   +        VL+I + + +    NR  + LSGG
Sbjct: 75  YVPQNYALFPHMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGG 133

Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
           E QR  +A+AL+  P +L+LDEP   +D   +  L E +  +R+  G  +L ++H+    
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193

Query: 191 MASTDTV-ICLNNRICYQGPPQTI 213
            A  D V I LN ++   G P+ +
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEV 217


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score = 96.5 bits (240), Expect = 6e-21
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 34/239 (14%)

Query: 10  LISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            + L N SF   G   K L++ N T+   E V ++G +GSGKST+ +L+ G   P  GS+
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395

Query: 68  K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVN 115
                       +  +  +  + Q+V + +    +L   + L+ P + D ++   L +V 
Sbjct: 396 TLNGVEIASLDEQALRETISVLTQRVHLFSG---TLRDNLRLANPDASDEELWAALQQVG 452

Query: 116 LIGKYNRNIKD------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
           L  K   +  D            LSGGE +R  LA+ALL    L +LDEP +G+D   E 
Sbjct: 453 L-EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511

Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
            +  L+    +  G  +L+++H L  +    D +I L+N +I  +G    +  N    +
Sbjct: 512 QVLALLFEHAE--GKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 35/237 (14%)

Query: 15  NTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----- 67
           + SF  +    K +  ++F +K  EI+ ++G +GSGKS +AK I G++      +     
Sbjct: 8   SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67

Query: 68  ------------KRHPQLI---VGYVPQK--------VTIENTLPLSLMR-FMTLSMPSS 103
                       K   ++    +  + Q         +TI + +   L      LS   +
Sbjct: 68  LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127

Query: 104 RDDVLQILDRVNLIG---KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
           ++  +++L+ V +     +      +LSGG  QR ++A AL   P LL+ DEP   +D  
Sbjct: 128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187

Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
            +  + +L+  +++  G  ++LI+H+L +V    D V  +   RI  +GP + I  N
Sbjct: 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 26/214 (12%)

Query: 19  HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------- 68
                  L+D++ ++   EI  +IG +G+GKST+ + I G+ +PT GSV           
Sbjct: 14  TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS 73

Query: 69  ----RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
               R  +  +G + Q       +   EN  LPL +     +      + VL++L+ V L
Sbjct: 74  GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGL 130

Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
             K +     LSGG+ QR  +A+AL   P +L+ DE    +D     S+  L+  + +  
Sbjct: 131 EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190

Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209
           G  I+LI+H + +V    D V  +    +  +G 
Sbjct: 191 GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 31/226 (13%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I   N +F +     +L+DINF+IKP E V ++GP G+GK+T+  L+     P  G +  
Sbjct: 3   IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---- 114
               I           +G V Q   +      ++M  + L  P++ D+ +    +     
Sbjct: 63  DGIDIRDISRKSLRSMIGVVLQDTFL---FSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119

Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
                L   Y+  +     +LS GE Q   +A+A+LR P +L+LDE    ID   E  + 
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211
           E +  + +      ++I+H L  +  + D ++ L++ +I  +G   
Sbjct: 180 EALEKLMKGRTS--IIIAHRLSTIKNA-DKILVLDDGKIIEEGTHD 222


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score = 93.4 bits (232), Expect = 4e-20
 Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 31/228 (13%)

Query: 10  LISLSNTSFHKNGYK-----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
           +I L N S             L D++  I   EI  +IG +G+GKST+ +LI  + +PT 
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60

Query: 65  GSVK--------------RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPS 102
           GSV               R  +  +G + Q       +   EN   PL L     +    
Sbjct: 61  GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAE 117

Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
            +  V ++L+ V L  K +R    LSGG+ QR  +A+AL   P +L+ DE    +D    
Sbjct: 118 IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177

Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209
            S+ EL+  + +  G  I+LI+H + +V    D V  L+  R+  +G 
Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 93.6 bits (232), Expect = 5e-20
 Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 19/209 (9%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------KRHP 71
             ++ ++F + P E   L+G NG+GK+T  K++TG  KPT G               +  
Sbjct: 579 GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638

Query: 72  QLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNRNIKD 126
           +  +GY PQ   +   L     + F      L        + ++L  V L    N+ ++ 
Sbjct: 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRT 698

Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
            SGG  +R   A AL+  P++++LDEP  G+D      L+++I  +R++    I+L SH+
Sbjct: 699 YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHS 757

Query: 187 LHMVMA-STDTVICLNNRICYQGPPQTIK 214
           +    A  T T I +  ++   G PQ +K
Sbjct: 758 MEEAEALCTRTAIMVIGQLRCIGSPQELK 786


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 19/223 (8%)

Query: 10  LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           +I++ N S       +L D++  I    I ++IGPNG+GKST+  +++ ++K   G +  
Sbjct: 1   MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60

Query: 70  HPQLIVGY----VPQKVTI---ENTLPLSLM--------RF-MTLSMPSSRDDVL--QIL 111
               +       + +K++I   EN +   L         RF  +    +  D  +  + +
Sbjct: 61  DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120

Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
           + ++L    +R + +LSGG+ QRA +A  L +  + ++LDEPL  +D    + + +++  
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180

Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
           +    G  I+++ H+++     +D ++ L N ++  QG P  I
Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score = 92.3 bits (229), Expect = 1e-19
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 31/245 (12%)

Query: 5   LSITPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
             +  +I   + SF    +    +L++++FTI+P E+V L+GP+GSGKSTIA L+     
Sbjct: 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519

Query: 62  PTIGSVK-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
           PT G +            ++ +  +G V Q+  + +      + +   +  ++ +++   
Sbjct: 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN--ATDEEIEAA 577

Query: 111 LDRVN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
               N           YN  + +    LSGG+ QR  +A+ALLR P +L+LDE    +D 
Sbjct: 578 AKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637

Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI--KDNA 217
             E  + E +  + Q  G  +L+I+H L  V  +   V+    R+   G    +  K N 
Sbjct: 638 ESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695

Query: 218 EYIRL 222
            Y +L
Sbjct: 696 LYAKL 700


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 17/205 (8%)

Query: 20  KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------KR 69
           K   + +  ++FT+KP E+  L+GPNG+GK+T  +++ G+++P  G              
Sbjct: 15  KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA 74

Query: 70  HPQLIVGYVPQKVTIENTLPLSLM-----RFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124
             +  +G+V     + + L              L        + ++ DR+ +    +R +
Sbjct: 75  EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV 134

Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
              S G  Q+  +A+AL+  P +L+LDEP  G+D     +L E I  +R + G  IL  +
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFST 193

Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208
           H +  V    D V+ L+  R+ Y+G
Sbjct: 194 HIMQEVERLCDRVVVLHRGRVVYEG 218


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 91.3 bits (226), Expect = 2e-19
 Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 9   PLISLSNTSFHKNGYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
           P++ L + +F   G K L + ++F I  +  + ++GPNG GKST+ KL+ G + P  G +
Sbjct: 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644

Query: 68  KRHPQLIVGYVPQ----KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNR 122
           +++ +L +G+  Q     +  E T    L R   L    +R    + L    L    +  
Sbjct: 645 RKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEAR----KQLGTFGLASHAHTI 700

Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
            IKDLSGG+  R  LA+  L  P++L+LDEP   +D     S+  L  ++ +  G G+++
Sbjct: 701 KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE---SIDALAEAINEYNG-GVIM 756

Query: 183 ISHNLHMV 190
           +SH+  ++
Sbjct: 757 VSHDERLI 764



 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG---IIKPTIGSV 67
           I + N      G  +  + + TI       L+GPNG GK+T+ K I      I P I  +
Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324

Query: 68  KRHPQLIVGYVPQKVTI----ENTLPL-----SLMRFMTLSMPSSRDDVLQILDRVNLIG 118
               +++        T+    +  L L      LM  +     ++ + + ++ D +  IG
Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384

Query: 119 KY--------------------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
                                  R     SGG   R  LA+AL  +P LL+LDEP   +D
Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444

Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR 203
               + L   +   +++    +L++SH+   + +    +I L+N+
Sbjct: 445 LNAVIWLDNYLQGWKKT----LLIVSHDQGFLDSVCTDIIHLDNQ 485


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I   N +  +  G K + ++N  I   E + LIGP+GSGK+T  K+I  +I+PT G +  
Sbjct: 1   IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60

Query: 70  HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
             + I           +GYV Q++      T+E  + L + + +       R+   ++L 
Sbjct: 61  DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLA 119

Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
            V L   ++ +R   +LSGG+ QR  +A+AL   P LL++DEP   +D      L E   
Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNNRIC 205
            ++Q  G  I+ ++H++       D    L +RI 
Sbjct: 180 RLQQELGKTIVFVTHDI-------DEAFRLADRIA 207


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           + L   +    G K L  ++ +++  E+  L+G NG+GKST+ K+++G+ KP  G +   
Sbjct: 1   LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60

Query: 71  PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
            + +    P+             R   ++M      V Q                 LS G
Sbjct: 61  GKEVSFASPRD-----------ARRAGIAM------VYQ-----------------LSVG 86

Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
           E Q   +A+AL R   LL+LDEP   +       L+++I  +R   G  ++ ISH L  V
Sbjct: 87  ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145

Query: 191 MASTDTVICLNN 202
               D V  L +
Sbjct: 146 FEIADRVTVLRD 157


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I + N       + +L+ I+ T+K  E+V +IGP+GSGKST+ + I  + +P  G++   
Sbjct: 1   IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60

Query: 71  PQLI-------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
              +             VG V       P    +EN + L+ ++   +S   + +  L++
Sbjct: 61  GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLEN-ITLAPIKVKGMSKAEAEERALEL 119

Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
           L++V L  K +     LSGG+ QR  +A+AL   P +++ DEP   +D P      EL+ 
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD-P------ELVG 172

Query: 171 SVRQ------STGCGILLISHNLHMVMASTDTVI 198
            V          G  +++++H +       D VI
Sbjct: 173 EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score = 89.6 bits (222), Expect = 6e-19
 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 9   PLISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
           P + +S  +F      Y+  + +    + +  ++ +G NG GKST+ K++ G + PT G 
Sbjct: 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGI 420

Query: 67  VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLIGKY-NRNI 124
           V RHP+L + Y  Q         ++ + FM  S P  + +++ + L    L G+   ++I
Sbjct: 421 VGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI 480

Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
             LSGG+  R   A      P+LLVLDEP   +D     SL  L  +++   G G++L+S
Sbjct: 481 ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD---SLGALAKALKNFNG-GVVLVS 536

Query: 185 HNLHMVMASTDTV-ICLNNRI 204
           H+   + +    + +  + ++
Sbjct: 537 HDEEFISSLCKELWVVEDGKV 557



 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 22/203 (10%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           I + N      G  +L   N T+       L+G NG GKST+ + I        G V   
Sbjct: 81  IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF 134

Query: 71  P--QLIVG-YVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVNLIG------KY 120
              Q + G       ++  +     + F+       +   + +I D++ L G        
Sbjct: 135 HVEQEVRGDDTEALQSVLES-DTERLDFLAEEKELLAGLTLEEIYDKI-LAGLGFTPEMQ 192

Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
            +  K LSGG   R  LA+AL  KP+LL+LDEP   +D      L   + + + +     
Sbjct: 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKIT----S 248

Query: 181 LLISHNLHMVMASTDTVICLNNR 203
           L++SH+ + +      +I L N 
Sbjct: 249 LIVSHDRNFLNTVCTDIIHLENL 271



 Score = 34.9 bits (80), Expect = 0.018
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 39  VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
           + ++G   + KST+ +++ G + PT G V   P L + YV
Sbjct: 329 IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV 368


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 89.5 bits (222), Expect = 7e-19
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 28/219 (12%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
            ++ L   S    G+K L D++F++ P E+  LIGPNG+GK+T+  +ITG  +P  G V 
Sbjct: 4   IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63

Query: 68  -------KRHP-----QLIVGYVPQK------VTIENTLPLSLMR----FMTLS---MPS 102
                   + P     +  +G   QK      +T+   L L+L R    F +L       
Sbjct: 64  FDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE 123

Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
            R  + ++L  + L  + +R    LS G+ Q   +   L + P LL+LDEP+ G+     
Sbjct: 124 ERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAET 183

Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
               EL+ S+       IL++ H++  V    D V  L+
Sbjct: 184 EKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLH 220


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score = 89.1 bits (221), Expect = 9e-19
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 26/213 (12%)

Query: 18  FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--- 74
             K        I+F +   E+  + G +G+GKST+ + I G+ KP  G++  +  ++   
Sbjct: 6   IEKRLPDFTLKIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64

Query: 75  ------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
                       +G V Q+      + +   L   L R         R  V ++LD + L
Sbjct: 65  RKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR---KRNREDRISVDELLDLLGL 121

Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
               NR    LSGGE QR  LA+AL  +P LL+LDEP   +D    L L   +  ++++ 
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181

Query: 177 GCGILLISHNL-HMVMASTDTVICLNNRICYQG 208
              ++ ++H+L      +   V+  + R+ Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 89.1 bits (221), Expect = 9e-19
 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%)

Query: 3   NALSITPLISLSNTSFHKNGYK---ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59
           +  S +    L   +           L+DI+F I   E V +IG NG+GKST+ KLI GI
Sbjct: 17  HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76

Query: 60  IKPTIGSVKRHPQLI------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR 113
            KPT G VK   ++        G+ P+    EN         + L+     + V +I++ 
Sbjct: 77  YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI--YLRGLILGLTRKEIDEKVDEIIEF 134

Query: 114 VNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELSLYELIT 170
             L G + ++ +K  S G + R   + A   +P++L+LDE L   D  F  E  L  L  
Sbjct: 135 AEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF-QEKCLERLNE 192

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
            V ++    I+L+SH+L  +    D  I L + +I  +G P+ +
Sbjct: 193 LVEKNK--TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 36/241 (14%)

Query: 9   PLISLSNTS--FHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII-KPT 63
           PL+S+ N S  FH+ G   + ++ I+F I+  E + L+G +GSGKS  A  I G++  P 
Sbjct: 5   PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA 64

Query: 64  I----GSVKRHPQLIVGYVPQK-----------------------VTIENTLPLSLMRFM 96
                GS+    + ++    ++                        TI   L   L    
Sbjct: 65  AAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR 124

Query: 97  TLSMPSSRDDVLQILDRVNL---IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
            LS  ++R   L++L+ V +     + +    +LSGG+ QR ++A AL  +P+LL+ DEP
Sbjct: 125 GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184

Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQT 212
              +D   +  + +L+  ++   G  IL I+H+L +V    D V  + +  I   G  +T
Sbjct: 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244

Query: 213 I 213
           +
Sbjct: 245 L 245



 Score = 83.7 bits (207), Expect = 4e-17
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 26/224 (11%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT-----------------IGS 66
           + +  I+ T++  + + L+G +GSGKST+   +  +I                    +  
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360

Query: 67  VKRHPQLIV----GYVPQKVTIENTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGK-Y 120
           ++R  Q++     G +  ++T+   +   L +    LS       V++ L+ V L     
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420

Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
           NR   + SGG+ QR  +A+AL+ KP L++LDEP   +D   +  + +L+  ++Q  G   
Sbjct: 421 NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480

Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN--AEYIR 221
           L ISH+L +V A    VI + + +I  QGP + +  N   EY R
Sbjct: 481 LFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
           superfamily [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 1228

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 26/241 (10%)

Query: 6   SITPLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP 62
           SI   I   N  F    +   KIL+ ++  I   + V L+GP+GSGKST+ +L+     P
Sbjct: 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405

Query: 63  TIGSV----KRHPQLIVGYVPQKVTIENTLP----LSLMRFMTLSMPS-SRDDVLQILDR 113
           T G V    +    L + ++  ++ + +  P     ++   +    P  +R+++ +    
Sbjct: 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465

Query: 114 VN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
            N       L   Y+  + +    LSGG+ QR  +A+AL+R P +L+LDE    +D   E
Sbjct: 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525

Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-PPQTIKDNAEYIR 221
             + E +   + S G   ++++H L  +  +    +    +I  QG   + I     Y  
Sbjct: 526 RVVQEAL--DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSS 583

Query: 222 L 222
           L
Sbjct: 584 L 584



 Score = 79.1 bits (195), Expect = 9e-16
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 11   ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            I   N SF    +    +L +++ +I+  + V L+GP+GSGKST+  L+     P  G V
Sbjct: 988  IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047

Query: 68   K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVN 115
            K           +  +  +G V Q+  + N    ++   +       S +++++     N
Sbjct: 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG---TIRENIAYGSEEVSEEEIIEAAKLAN 1104

Query: 116  -------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
                   L   Y+  + +    LSGG+ QR  +A+A+LR P +L+LDE    +D   E  
Sbjct: 1105 AHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV 1164

Query: 165  LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
            + E +    +      ++I+H L  +  +    +  N ++  QG     +     Y RL
Sbjct: 1165 VQEALDRAMEGRTT--IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRL 1221


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 20/192 (10%)

Query: 28  DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV------------ 75
           D NFT+    I  L GP+GSGK+++  +I G+ +P  G ++ + +++V            
Sbjct: 16  DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75

Query: 76  ---GYVPQKVTI--ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
              GYV Q   +    T+  +L   M  SM +  D ++ +L   +L+ +Y      LSGG
Sbjct: 76  RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG---TLSGG 132

Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
           E QR  + +ALL  P LL++DEPL  +D P +  +   +  +R      IL +SH+L  V
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192

Query: 191 MASTDTVICLNN 202
           +   D V+ L N
Sbjct: 193 LRLADRVVVLEN 204


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 17/190 (8%)

Query: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ------LIVG 76
           +  L+D++F +   E + LIG NG+GKST+ +L+ GI  P  G+V    +      L  G
Sbjct: 35  FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG 94

Query: 77  YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIGKY-NRNIKDLSGGEF 132
           + P+    EN             +  SR ++ + +D +   + +G + +  +K  S G  
Sbjct: 95  FNPELTGRENI------YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMK 148

Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
            R   A A   +P++L++DE L   D   +      +       G  ++L+SH+   +  
Sbjct: 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVILVSHDPSSIKR 207

Query: 193 STDTVICLNN 202
             D  + L  
Sbjct: 208 LCDRALVLEK 217


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 11  ISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I+L N S    +G  +L ++NF ++P E + + G +G+GK+++ + + G+     G +  
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452

Query: 70  HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL---IGKYNRNI-- 124
                + ++PQ+  +        + +   +   S  +++ +L +V L     + +     
Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW 512

Query: 125 -KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
            + LSGGE QR   A+ LL KP  + LDE    +D   E  LY+L+    +     ++ +
Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK--EELPDATVISV 570

Query: 184 SH 185
            H
Sbjct: 571 GH 572


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score = 87.7 bits (217), Expect = 3e-18
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 24/230 (10%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIVGYV 78
           ++D++F  +  EI  L+G NG+GK+T+ ++I  ++ P  G V        R P  +   +
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77

Query: 79  ---------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
                      ++T    L     R   LS    +  + ++  R+ L+   +R + + S 
Sbjct: 78  GVLFGERGLYARLTARENL-KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136

Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
           G  Q+  +A+AL+  P++LVLDEP  G+D       ++ I  ++      ++  SH +  
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA-VIFSSHIMQE 195

Query: 190 VMASTDTVICLNN-RICYQGPPQ-----TIKDNAEYIRLFGTRATEILAI 233
           V A  D VI L+   +  +G  +     T+  N E I  F  +  E   I
Sbjct: 196 VEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEEGTFI 245


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67
           + D++  ++  EI  ++G +GSGKST+ + I  +I+PT G V                  
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99

Query: 68  KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
           +R    +V      +P +  +EN    L +     +      +   + L+ V L G  ++
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPRAEREERAAEALELVGLEGWEHK 156

Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
              +LSGG  QR  LA+AL   P++L++DE    +D      + + +  ++      I+ 
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216

Query: 183 ISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223
           I+H+L   +   D +  + + R+   G P+ I  N   +Y+R F
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREF 260


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 20/203 (9%)

Query: 22  GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------K 68
               L D+N  I   E V L+GP+G GK+T  ++I G+ +PT G +              
Sbjct: 12  NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71

Query: 69  RHPQLIV---GYVPQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124
           R   ++       P     +N    L L +     +     +V ++L   +L+   +R  
Sbjct: 72  RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL---DRKP 128

Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
           K LSGG+ QR  L +A++R+P + ++DEPL  +D    + +   +  ++Q  G   + ++
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188

Query: 185 HNLHMVMASTDTVICLNNRICYQ 207
           H+    M   D +  +N+    Q
Sbjct: 189 HDQVEAMTMADRIAVMNDGQIQQ 211


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 86.5 bits (214), Expect = 6e-18
 Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 28  DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81
             + T    EI  ++GP+GSGKST+  LI G   P  G V  +   +    P        
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75

Query: 82  ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
                    +T+E  + L L   + L+    R  +   L RV L G   R   +LSGGE 
Sbjct: 76  FQENNLFAHLTVEQNVGLGLSPGLKLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGER 134

Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
           QR  LA+ L+R   +L+LDEP   +D      + +L+  +   T   +L+++H       
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194

Query: 193 STDTVICLNN-RICYQG 208
               V+ L+N RI  QG
Sbjct: 195 LAQRVVFLDNGRIAAQG 211


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 86.6 bits (214), Expect = 6e-18
 Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 30/216 (13%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I  SN +F +  G  +L DI+FT++P + V L+GP+G+GKSTI +L+        GS+  
Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL-------QIL 111
             Q I           +G VPQ   + N   L  +R+   + PS+ ++ +       QI 
Sbjct: 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRY---AKPSASNEEVYAAAKAAQIH 654

Query: 112 DRV-NLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
           DR+      YN  + +    LSGGE QR  +A+ +L+ P++++LDE    +D   E ++ 
Sbjct: 655 DRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ 714

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
             +  +        ++++H L  ++ + D ++ ++N
Sbjct: 715 AALARL--CANRTTIVVAHRLSTIV-NADLILVISN 747


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 86.5 bits (214), Expect = 6e-18
 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 5/188 (2%)

Query: 32  TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL- 90
           +I  +E++ ++GPNG GK+T  K++ G++KP  G ++      V Y PQ +  +    + 
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79

Query: 91  SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150
            L+  +T    +      +I   + +    +R + +LSGGE QR  +A  L +  ++ +L
Sbjct: 80  DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139

Query: 151 DEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-- 208
           DEP   +D    L   ++I    ++      ++ H++ M+    D +I         G  
Sbjct: 140 DEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVA 199

Query: 209 -PPQTIKD 215
            PPQ+++ 
Sbjct: 200 NPPQSLRS 207


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 37/189 (19%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74
           ++D++F ++  EIV + G  G+G++ +A+ + G+  P  G +    + +           
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 75  -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQ 133
            + YVP     E+     L+    L +  + +  L  L               LSGG  Q
Sbjct: 76  GIAYVP-----EDRKREGLV----LDLSVAENIALSSL---------------LSGGNQQ 111

Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193
           + +LA+ L R P +L+LDEP +G+D   +  +Y LI  +  + G  +LLIS  L  ++  
Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGL 170

Query: 194 TDTVICLNN 202
            D ++ +  
Sbjct: 171 CDRILVMYE 179


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 85.7 bits (212), Expect = 9e-18
 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
            ++   N S  +    +  D++FT+   E + + GPNG+GK+T+ +++ G+++P  G V 
Sbjct: 1   MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60

Query: 69  ---RHPQLIVGYVPQKVTI---ENTLPLSL-----MRFMT-LSMPSSRDDVLQILDRVNL 116
                 Q +     Q +     +  +   L     + F        +   + + L +V L
Sbjct: 61  WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGL 120

Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
            G  +  +  LS G+ +R  LA+  L    L +LDEP   +D  G   L  L+ +     
Sbjct: 121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180

Query: 177 GCGILLISH 185
           G  +LL +H
Sbjct: 181 G-IVLLTTH 188


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 21/200 (10%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYV 78
            G +IL+ +N TIK  E+  L+GPNGSGKST+AK I G    + T G +    + I    
Sbjct: 11  GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT--- 67

Query: 79  PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD-LSGGEFQRALL 137
              +  E    L +  F+    P     V            + R + +  SGGE +R  +
Sbjct: 68  --DLPPEERARLGI--FLAFQYPPEIPGV--------KNADFLRYVNEGFSGGEKKRNEI 115

Query: 138 AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV-MASTDT 196
            + LL +P+L +LDEP  G+D      + E+I  +R   G  +L+I+H   ++     D 
Sbjct: 116 LQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKPDR 174

Query: 197 V-ICLNNRICYQGPPQTIKD 215
           V +  + RI   G  +   +
Sbjct: 175 VHVLYDGRIVKSGDKELALE 194


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 11  ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
           I   N SF    +    IL+ ++ TI P + V L+G +G GKST+  L+     PT G +
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 68  K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR--- 113
                       R  +  +G V Q+  + +    ++   +    P + D+ ++   +   
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG---TIAENIRYGKPDATDEEVEEAAKKAN 117

Query: 114 -----VNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
                ++L   Y+  + +    LSGG+ QR  +A+ALLR P +L+LDE    +D   E  
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177

Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
           + E +    +      ++I+H L  +  +    +  N ++  QG     +     Y +L
Sbjct: 178 VQEALDRAMKGRTT--IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 34/241 (14%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG----------- 58
           I   +  F +    K+L+ ++FTI   E V ++G NGSGKSTI +L+             
Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILID 411

Query: 59  ---IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV- 114
              I + ++ S+++     +G VPQ   + N   L  +++   S   S ++V++   R  
Sbjct: 412 GQDIKEVSLESLRQ----SIGVVPQDSVLFNDTILYNIKYGNPSA--SDEEVVEACKRAG 465

Query: 115 ------NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
                  L   Y   +      LSGGE QR  LA+A L+   +L+LDE    +D   E  
Sbjct: 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETERE 525

Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFG 224
           + ++I  V   +G  +++I H L ++      ++  N  +   G    +   +E      
Sbjct: 526 ILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLW 583

Query: 225 T 225
           T
Sbjct: 584 T 584


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 22/202 (10%)

Query: 10  LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GS 66
           ++ L N S    G  +L ++NFTI   EIVTL+GP+G GKST+   + G +       G 
Sbjct: 2   MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61

Query: 67  VKRHPQLI---------VGYVPQKVTIENTLP-LSLMRFMTLSMPSS------RDDVLQI 110
           +  + Q +         +G + Q   +    P LS+ + +  ++P++      R+     
Sbjct: 62  LWLNEQRLDMLPAAQRQIGILFQDALL---FPHLSVGQNLLFALPATLKGNARRNAANAA 118

Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
           L+R  L G ++++   LSGG+  R  L +ALL +P  L+LDEP   +D        + + 
Sbjct: 119 LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVF 178

Query: 171 SVRQSTGCGILLISHNLHMVMA 192
           S  ++ G   + ++H+L  V A
Sbjct: 179 SEVRAAGIPTVQVTHDLQDVPA 200


>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score = 83.7 bits (207), Expect = 5e-17
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 27/220 (12%)

Query: 22  GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYVP 79
             +IL+ +N T+K  E+  ++GPNGSGKST+A  I G    + T G +    + I+   P
Sbjct: 16  KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75

Query: 80  QK-----VTIENTLP-----LSLMRFMTLSMPSSRDD----------VLQILDRVNLIGK 119
            +     + +    P     ++   F+  +M + R            + +  + + L  +
Sbjct: 76  DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135

Query: 120 Y-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
           +  R + +  SGGE +R  + + LL +P L +LDEP  G+D      + E I ++R+  G
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-G 194

Query: 178 CGILLISHNLHMVMAST-DTV-ICLNNRICYQGPPQTIKD 215
            G+L+I+H   ++     D V +  + RI   G P+  ++
Sbjct: 195 RGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEE 234


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score = 83.1 bits (205), Expect = 6e-17
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 37/228 (16%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67
           + D +  ++  EI  ++G +GSGKST+ +L+  +I+PT G +                  
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 68  KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
           +R    +V      +P +  +EN    L +     +      +  L+ L+ V L G  ++
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPKAEREERALEALELVGLEGYADK 160

Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELS--LYELITSVRQSTGC 178
              +LSGG  QR  LA+AL   P++L++DE    +D     E+   L EL   ++++   
Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT--- 217

Query: 179 GILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNA--EYIRLF 223
            I+ I+H+L   +   D + I  +  I   G P+ I  N   +Y+R F
Sbjct: 218 -IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 20/201 (9%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------RHPQL 73
           NG   L  IN +I   E V L+GP+G+GKST+ KLI     PT G+++            
Sbjct: 12  NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71

Query: 74  IVGYVPQKVTI---ENTLPLSLMRFMTLSMP---------SSRDDVLQILDRVNLIGKYN 121
            + Y+ +K+ +   +  L      +  ++             R  V   L+ V L  K+ 
Sbjct: 72  AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131

Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
               +LSGGE QR  +A+A++  P +L+ DEP   +D      +  L+  + ++ G  ++
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVV 190

Query: 182 LISHNLHMVMASTDTVICLNN 202
           + +H   +V  +   VI L  
Sbjct: 191 VATHAKELVDTTRHRVIALER 211


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 82.7 bits (204), Expect = 8e-17
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 20  KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
           ++G  +   ++FT+   E + + GPNGSGK+T+ +++ G+  P  G V  +   +     
Sbjct: 10  RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69

Query: 75  -----VGYVPQKVTIENTL-PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
                + Y+     I+ TL  L  +RF       S + V + L RV L G  +R +  LS
Sbjct: 70  SIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQVEEALARVGLNGFEDRPVAQLS 127

Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
            G+ +R  LA+ LL    L +LDEP   +D  G     E +       G  +L    +L
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 31/239 (12%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           +   N +F    +G  +L+DI+  I   E V L+GP+GSGKST+  LI        G + 
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 69  ------RHPQL-----IVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN- 115
                 R   L      +G V Q V + N    ++   +    P ++R++V +     N 
Sbjct: 61  IDGHDVRDYTLASLRRQIGLVSQDVFLFND---TVAENIAYGRPGATREEVEEAARAANA 117

Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
                 L   Y+  I +    LSGG+ QR  +A+ALL+ P +L+LDE    +D   E  +
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177

Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP-PQTIKDNAEYIRLF 223
              +   R        +I+H L  +  +   V+  + +I  +G   + +     Y +L 
Sbjct: 178 QAALE--RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 32/204 (15%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           +S++N SF   +   ++L++++  +K  E + L+G +GSGKST+ +L+TG +KP  G + 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI- 59

Query: 69  RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNI--K 125
                                 +L       +  +   ++ +L+ R  L     RN   +
Sbjct: 60  ----------------------TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97

Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
             SGGE QR  LA+ LL+   +++LDEP  G+D   E  L  LI  V +     ++ I+H
Sbjct: 98  RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITH 155

Query: 186 NLHMVMASTDTVICLNN-RICYQG 208
           +L   +   D ++ L N +I  QG
Sbjct: 156 HL-TGIEHMDKILFLENGKIIMQG 178


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 22/211 (10%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
           + L+ L    +     KIL +I+ +++  E + + GP+G GKST+ K++  +I PT G++
Sbjct: 1   SMLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60

Query: 68  KRHPQLI-----------VGYVPQKV-----TIENTLPL-SLMRFMTLSMPSSRDDVLQI 110
               + +           V Y  Q       T+E+ L     +R    +    R   L +
Sbjct: 61  LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR----NRRPDRAAALDL 116

Query: 111 LDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
           L R  L      +NI +LSGGE QR  L + L   P +L+LDE    +D   + ++ E+I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176

Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICL 200
               +     +L I+H+    +   D VI L
Sbjct: 177 HRYVREQNVAVLWITHDKDQAIRHADKVITL 207


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 20/204 (9%)

Query: 18  FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS--VKRHPQLIV 75
           F +   + ++ ++FT++  + + +IG NGSGKST+AK++ G+I+PT G   +  HP    
Sbjct: 21  FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80

Query: 76  GYVPQ-----------------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIG 118
            Y  +                 ++ I   L   L     L     R  + + L  V L+ 
Sbjct: 81  DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140

Query: 119 KY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
            + N     L+ G+ QR  LA+AL+ +P +++ DE L  +D      L  L+  +++  G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200

Query: 178 CGILLISHNLHMVMASTDTVICLN 201
              + ++ ++ M+   +D V+ ++
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 35/241 (14%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
           I+  +  F    +G  IL +I+  IKP E+V ++G +GSGKST+ KLI     P  G V 
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 68  ----------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                         +  VG V Q+  + N    S+   + L+ P     + ++++   L 
Sbjct: 61  VDGHDLALADPAWLRRQVGVVLQENVLFNR---SIRDNIALADPGM--SMERVIEAAKLA 115

Query: 118 GK----------YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
           G           Y+  + +    LSGG+ QR  +A+AL+  P +L+ DE    +D+  E 
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175

Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
           ++   +  +    G  +++I+H L  V  +   ++    RI  QG     + +N  Y  L
Sbjct: 176 AIMRNMHDI--CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233

Query: 223 F 223
           +
Sbjct: 234 Y 234


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score = 80.0 bits (197), Expect = 6e-16
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 26/185 (14%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
           IL+ +   +K  E V ++GP+GSGKST+  ++ G+  P+ G V+   Q +          
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84

Query: 75  -----VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
                VG+V       P    +EN  LPL L      S   SR     +L+ V L  +  
Sbjct: 85  LRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKRLT 141

Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
                LSGGE QR  LA+A   +P++L  DEP   +D      + +L+ ++ +  G  ++
Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201

Query: 182 LISHN 186
           L++H+
Sbjct: 202 LVTHD 206


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 35/240 (14%)

Query: 9   PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP-----T 63
           P I + + + +      L+DIN  I  N++  LIGP+G GKST+ + +  +         
Sbjct: 6   PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 64  IGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMT--LSMPSSRDDVL 108
            G V    + I             VG V QK    N  P+S+   +   L +   +D  L
Sbjct: 66  EGEVLLDGKNIYDPKVDVVELRRRVGMVFQK---PNPFPMSIYDNVAYGLRLHGIKDKEL 122

Query: 109 -----QILDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
                  L +  L      + +++   LSGG+ QR  +A+AL  KP +L++DEP   +D 
Sbjct: 123 DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182

Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTIKDNAE 218
              L + ELIT +++     I++++HN+      +D T       +   GP   I  N +
Sbjct: 183 ISTLKIEELITELKKKY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 79.6 bits (196), Expect = 8e-16
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 31/229 (13%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIGSV 67
           ++LS+    K    IL+ ++ T KP E++ ++GP+GSGK+T+   + G +       G +
Sbjct: 31  LTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90

Query: 68  --------KRHPQLIVGYVPQKVTIENTLPLS--LMRFMTLSMPSSR---------DDVL 108
                    R  + I GYV Q   +  TL +   L     L +PSS          ++V+
Sbjct: 91  LLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI 150

Query: 109 QILD----RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
             L        LIG  N  I+ LSGGE +R  +A  LL  P++L LDEP  G+D    L 
Sbjct: 151 SELGLEKCADTLIG--NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQ 208

Query: 165 LYELITSVRQSTGCGILLISHNL-HMVMASTDTVICLNN-RICYQGPPQ 211
           + +L+  + +S G  ++   H     +    D ++ L+   + Y G P+
Sbjct: 209 VVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--------TIGSVKRHPQL-- 73
           +IL D++  ++  +++ ++G +GSGK+T+   I+G ++               R P    
Sbjct: 21  RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80

Query: 74  -IVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD---DVLQILDRVNLIGKYNRN 123
             V YV Q       +T+  TL  + +  +      +         +L  + L       
Sbjct: 81  KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140

Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ--STGCGIL 181
           +K +SGGE +R  +A  LL  P +L+LDEP  G+D     +   L++++ Q       ++
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD---SFTALNLVSTLSQLARRNRIVI 197

Query: 182 LISH 185
           L  H
Sbjct: 198 LTIH 201


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 78.5 bits (193), Expect = 2e-15
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 22/221 (9%)

Query: 37  EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI------ENTLPL 90
           EI+ L+GPNG+GKST+   + G+     GS++   Q +  +   ++        +   P 
Sbjct: 26  EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84

Query: 91  SLM---RFMTLSMPSSR--DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLR-- 143
             M    ++TL  P     + +  +   + L  K  R+   LSGGE+QR  LA  +L+  
Sbjct: 85  FAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144

Query: 144 -----KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
                   LL+LDEP+  +D   + +L  L++++ Q  G  I++ SH+L+  +       
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAW 203

Query: 199 CLNNRICY-QGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238
            L        G  + +       + +G      L I  H  
Sbjct: 204 LLKRGKLLASGRREEVLTPPVLAQAYGMN-FRRLDIEGHPM 243


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 31/176 (17%)

Query: 11  ISLSNTSFHK-NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           I L N S    +G  +L+D++F IKP + + + GP+G+GKS++ + + G+     G +  
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60

Query: 70  HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
                + ++PQ+           +   TL     R+ ++   D V            LSG
Sbjct: 61  PEGEDLLFLPQR---------PYLPLGTL-----REQLIYPWDDV------------LSG 94

Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
           GE QR   A+ LL KP  + LDE    +D   E  LY+L+    +  G  ++ + H
Sbjct: 95  GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL----KELGITVISVGH 146


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 38/211 (18%)

Query: 11  ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--GSV 67
           ++++  S      K +L++++   KP E+  ++GP+G+GKST+   + G        G V
Sbjct: 9   LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68

Query: 68  --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
                   KR  + I+GYVPQ    ++ L  +L    TL                     
Sbjct: 69  LINGRPLDKRSFRKIIGYVPQ----DDILHPTLTVRETLM-------------------- 104

Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
           +   ++ LSGGE +R  +A  L+  P+LL LDEP  G+D    L +  L+  +   TG  
Sbjct: 105 FAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRT 163

Query: 180 ILLISHNLHMVMAST-DTVICLNN-RICYQG 208
           I+   H     +    D ++ L+  R+ Y G
Sbjct: 164 IICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 19/190 (10%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
            L+DIN  +   E+V ++GP GSGKS++   + G ++   GSV       + YV Q+  I
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--IAYVSQEPWI 77

Query: 85  ENT---------LPLSLMRFMTLSMPSSRDDVLQILDRVNL--IGKYNRNIKDLSGGEFQ 133
           +N           P    R+  +    + +  L+IL   +L  IG+   N   LSGG+ Q
Sbjct: 78  QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGIN---LSGGQKQ 134

Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE-LITSVRQSTGCGILLISHNLHMVMA 192
           R  LA+A+    ++ +LD+PL  +D      ++E  I  +  +     +L++H L ++  
Sbjct: 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT-RILVTHQLQLLPH 193

Query: 193 STDTVICLNN 202
           + D ++ L+N
Sbjct: 194 A-DQIVVLDN 202


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 17/119 (14%)

Query: 50  STIAKLITGIIKPTIGSVKRHPQLI------------VGYVPQKVTIENTLPLSLMRFMT 97
           ST+ KLITG+++PT G++    +              +G V Q   +     L++   + 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLF--PELTVRENLF 58

Query: 98  LSMPSSRDD--VLQILDRVNLIGKYNRN-IKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
             +     D    + L+RV L    +R+ +  LSGG+ QR  +A+ALL+KP LL+LDEP
Sbjct: 59  FGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
            protein/mitoxantrone resistance protein, ABC superfamily
            [Secondary metabolites biosynthesis, transport and
            catabolism].
          Length = 1381

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 31/226 (13%)

Query: 15   NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
            +  +  N   +L+ I+FTIKP E V ++G  G+GKS++   +  +++P  G +      I
Sbjct: 1145 SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204

Query: 75   -----------VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI----- 117
                       +  +PQ   +   T+  +L  F       S D++ + L+R  L      
Sbjct: 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY----SDDEIWEALERCQLKDVVSS 1260

Query: 118  --GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
              G  +  + +     S G+ Q   LA+ALLRK  +LVLDE    +D   +  + + I  
Sbjct: 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320

Query: 172  VRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216
              +   C +L I+H L+ VM S D V+ L   R+     P  +  +
Sbjct: 1321 --EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELLSD 1363



 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%)

Query: 8   TPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
              I + N SF    ++    L+DINF IK  ++V ++GP GSGKS++   I G +    
Sbjct: 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575

Query: 65  GSVKRHPQLIVGYVPQKVTI------ENTL---PLSLMRFMTLSMPSSRDDVLQIL---D 112
           GSV  +    V YVPQ+  I      EN L   P    R+  +    +    L+IL   D
Sbjct: 576 GSVAVNG--SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633

Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE--LIT 170
               IG+   N   LSGG+ QR  LA+A+ +  ++ +LD+PL  +D      ++E  +  
Sbjct: 634 LTE-IGERGIN---LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG 689

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
            +R  T   ++L++H L   +   D +I L + +I   G  + +  +
Sbjct: 690 LLRGKT---VILVTHQLQ-FLPHADQIIVLKDGKIVESGTYEELLKS 732


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score = 76.9 bits (189), Expect = 4e-15
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80
           +LQD++FT+ P E+  L+GP+GSGKST+  L+    +P  G V    K   Q    Y+  
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88

Query: 81  KVTIENTLPL-----------------SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
           KV++    P+                 S       +  +     +  L        Y+  
Sbjct: 89  KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-----GYDTE 143

Query: 124 IKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
           + +    LSGG+ QR  +A+AL+R P +L+LDE    +D   E  + + +    +     
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--T 201

Query: 180 ILLISHNLHMV 190
           +L+I+H L  V
Sbjct: 202 VLVIAHRLSTV 212


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 41/225 (18%)

Query: 15  NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
           +  +  N   +L++I+F+IKP E V ++G  GSGKS++   +  +++ + GS+      I
Sbjct: 9   SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68

Query: 75  -----------VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
                      +  +PQ   +       N  P             S +++ Q L+RV L 
Sbjct: 69  SKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---------YSDEELWQALERVGLK 119

Query: 118 -------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
                  G  +  +++    LS G+ Q   LA+ALLRK  +LVLDE    +D   +  + 
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210
           + I        C +L I+H L  ++ S D ++ L+  R+     P
Sbjct: 180 KTIREAF--KDCTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)

Query: 11  ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
           ++  N SF  +  + IL  I+FTI   + V ++G +G+GKSTI +L+        GS+  
Sbjct: 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI 322

Query: 70  HPQLI-----------VGYVPQKVTIENTLPLSLMRF----MTLSMPSSRDDVLQILDRV 114
             Q I           +G VPQ   + N      +++     T     +  +  QI D +
Sbjct: 323 DGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFI 382

Query: 115 NLI------GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
             +      G   R +K LSGGE QR  +A+ +L+ P +L+LDE    +D   E ++   
Sbjct: 383 QSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441

Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
           +  V  S G   L+I+H L  +    D +I L+N
Sbjct: 442 LREV--SAGRTTLVIAHRLSTI-IDADEIIVLDN 472


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score = 72.8 bits (178), Expect = 8e-14
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)

Query: 11  ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
           I L+  +     ++ L DI       E + L+GP+G+GKS++ +++  +  P  G++   
Sbjct: 3   IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62

Query: 69  -------RHP--------QLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDV 107
                  + P        +  VG V Q+      +T++  L  +  R + LS   +    
Sbjct: 63  GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122

Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
            ++L R+ L    +R    LSGG+ QR  +A+AL+ +P +L+ DEP   +D      +  
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182

Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
           +I  +   TG   ++++H + +   +   V+ + N  I  QG
Sbjct: 183 IIKEL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 31/229 (13%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-----------KRHPQL 73
            L  ++  I   + VT+IG NG+GKST+   I G +KPT G +                 
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80

Query: 74  IVGYVPQK--------VTIENTLPLSLMRFMTLSMPSS-----RDDVLQILDRVNLIGKY 120
           ++  V Q         +TIE  L L+  R     + S+     R    + L R+ L G  
Sbjct: 81  LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL-GLE 139

Query: 121 NR---NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
           NR    I  LSGG+ Q   L  A L  P +L+LDE    +D      + EL   + +   
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199

Query: 178 CGILLISHNLHMVMASTDTVICLNN-RIC--YQGPPQTIKDNAEYIRLF 223
              L+++HN+   +   + +I L++ +I     G  +      + I++F
Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQMF 248


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 70.0 bits (171), Expect = 5e-13
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 39/214 (18%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT------------IGSVKRHP 71
           K +  ++ T+   EI  L+G +GSGKS IAK I G+ K              I  ++  P
Sbjct: 21  KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80

Query: 72  QLIVGYVPQKVTIENTLPLSLM-------RFMTLSMPS-------------SRDDVLQIL 111
           +     V   V++    P S +       R +  ++P+              +   +++L
Sbjct: 81  RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELL 140

Query: 112 DRVNLIGKYNRNI-----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
            RV +  K +++I      +L+ GE Q+ ++A AL  +P LL+ DEP   ++   +  ++
Sbjct: 141 HRVGI--KDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIF 198

Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
            L++ + Q++   ILLISH+L M+    D +  L
Sbjct: 199 RLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%)

Query: 12  SLSNTSFHKN--GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68
           +L     HK    +++L+ ++      +++++IG +GSGKST  + I  + KP+ GS++ 
Sbjct: 6   ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65

Query: 69  ----------RHPQLIVGYVPQKVTIENTLPLSLMRF-----MT--------------LS 99
                     +  QL      Q   +   L +    F     MT              +S
Sbjct: 66  NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125

Query: 100 MPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
              + +   + L +V +  K +     LSGG+ QR  +A+AL  +P +++ DEP   +D 
Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD- 184

Query: 160 PGELSLYELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
             EL + E++  ++     G  +++++H +      +  VI L+  +I  +GPP+ +  N
Sbjct: 185 -PEL-VGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242

Query: 217 AEYIRL 222
            +  RL
Sbjct: 243 PQSPRL 248


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 28/192 (14%)

Query: 34  KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP---------------------- 71
           +  +++ L+GPNG GKST  K++ G +KP +G     P                      
Sbjct: 24  REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83

Query: 72  --QLIVGYVPQKV-TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
              + V   PQ V  I   +   +     L     R  + +++D++ L    +RNI  LS
Sbjct: 84  EGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLS 141

Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH 188
           GGE QR  +A AL R  +    DEP   +D    L+   LI  + +     +L++ H+L 
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLA 200

Query: 189 MVMASTDTVICL 200
           ++   +D + CL
Sbjct: 201 VLDYLSDYIHCL 212


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK--------PTIGSVKRHPQLIVG 76
           +L+++N  IKP ++V ++G +G+GK+T+ ++I G  K        P  G V+     +  
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457

Query: 77  YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK--YNRNIKDLSGGEFQR 134
            +P +   E       +     S     +  ++IL+R  L     Y R   +LS G+ +R
Sbjct: 458 LIPGE--YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER 515

Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA-S 193
           A LAK L  +PN+L++DE    +D    + +   I+ + +  G  +++++H   +  A  
Sbjct: 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALR 575

Query: 194 TDTVI 198
            DT+I
Sbjct: 576 PDTLI 580


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG---Y 77
           NG  ++++++  +   + + + GP+G GK+++ +++ G+   T G + +          +
Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505

Query: 78  VPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL------IGKYNRNI-- 124
           +PQ+      T+ + +   L      S  +S +D+L+IL+ V L       G  ++ +  
Sbjct: 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDW 565

Query: 125 ---KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
                LS GE QR   A+    KP   +LDE    +    E +LY       +  G   +
Sbjct: 566 DWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC----REMGITFI 621

Query: 182 LISH 185
            + H
Sbjct: 622 SVGH 625


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 52/225 (23%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 5   LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
           +   PL+S+S  S      K  +D++F + P E++ ++G +GSGK+T+ K I+G + P  
Sbjct: 1   MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60

Query: 65  GSV-----KRHPQLIV---------------GYVPQ--------KVTIENTLPLSLMRFM 96
           G+V        P+ +                G+V Q        +V+    +   LM   
Sbjct: 61  GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG 120

Query: 97  TLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
                + R +    L+ V + + + +   +  SGG  QR  +A+ L+ +P L+ +DEP  
Sbjct: 121 ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180

Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
           G+D   +  L +L+  + +  G  +++++H+L +     D ++ +
Sbjct: 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM 225


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 13/218 (5%)

Query: 11  ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           + L N  F    N +  +  IN TIK  E+V LIG NGSGKST+A L+TG+ +P  G + 
Sbjct: 323 LELRNVRFAYQDNAFH-VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381

Query: 69  RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
              + +     +        V  +  L   L+     + P   +  LQ L+  +     +
Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLND 441

Query: 122 RNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
                  LS G+ +R  L  ALL + ++LVLDE     D       Y+++  + +  G  
Sbjct: 442 GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501

Query: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNA 217
           I  ISH+ H      D ++ + N    +   +   + A
Sbjct: 502 IFAISHDDHY-FIHADRLLEMRNGQLSELTGEERDETA 538


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
           (RLI) is a key enzyme in ribosomal biogenesis, formation
           of translation preinitiation complexes, and assembly of
           HIV capsids.  RLI's are not transport proteins, and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains, which
           are arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 177

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 44/166 (26%)

Query: 33  IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSL 92
           +K  E++ ++GPNG+GK+T  K++ G + P   + +    +   Y PQ +          
Sbjct: 22  VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-WDGITPVYKPQYI---------- 70

Query: 93  MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
                                            DLSGGE QR  +A ALLR     + DE
Sbjct: 71  ---------------------------------DLSGGELQRVAIAAALLRNATFYLFDE 97

Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
           P   +D    L+    I  + +      L++ H+L ++   +D + 
Sbjct: 98  PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 30/193 (15%)

Query: 34  KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP--QLIVGYV------------- 78
           +P +++ L+G NG GKST  K++ G  KP +G     P  Q I+ Y              
Sbjct: 98  RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157

Query: 79  ---------PQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127
                    PQ V   + +P ++   +   L     RD+  ++ D+++L    +R ++ L
Sbjct: 158 EDNLKAIIKPQYV---DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQL 214

Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
           SGGE QR  +A   ++K ++ + DEP   +D    L     I S+       I+++ H+L
Sbjct: 215 SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY-IIVVEHDL 273

Query: 188 HMVMASTDTVICL 200
            ++   +D + CL
Sbjct: 274 SVLDYLSDFICCL 286



 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 37  EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS-LMRF 95
           EI+ ++G NG+GK+T  +++ G +KP  G     P L V Y PQK++ +    +  L+  
Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG--EIPVLNVSYKPQKISPKREGTVRQLLHT 425

Query: 96  MTLSM---PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
                   P   +DV++ L   N+I    + ++ LSGGE QR  LA  L +  ++ ++DE
Sbjct: 426 KIRDAYMHPQFVNDVMKPLQIENIID---QEVQGLSGGELQRVALALCLGKPADVYLIDE 482

Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN---NRICYQGP 209
           P   +D    +   ++I            ++ H+  M     D VI      +       
Sbjct: 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANS 542

Query: 210 PQTI 213
           PQ++
Sbjct: 543 PQSL 546


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74
            +L++++F +K  E + ++G  G+GKST+   +   ++   G ++     I         
Sbjct: 22  PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81

Query: 75  --VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
             +  +PQ  T+   T+  +L  F   S     D+ +    RV+  G       +LS G+
Sbjct: 82  SSLTIIPQDPTLFSGTIRSNLDPFDEYS-----DEEIYGALRVSEGG------LNLSQGQ 130

Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
            Q   LA+ALL++P +LVLDE    ID+  +  + + I    + T   IL I+H L  ++
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTII 188


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 18/206 (8%)

Query: 12  SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
           +L  ++    G  +L++IN  I+  E++ + G  GSGK+++  LI G ++P+ G +K   
Sbjct: 39  NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98

Query: 72  QLIVGYVPQKVTI------ENTL-PLSLMRFMTLSMPSS---RDDVLQILDRVN-LIGKY 120
           +  + +  Q   I      EN +  +S   +   S+  +    +D+ +  ++ N ++G+ 
Sbjct: 99  R--ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156

Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
                 LSGG+  R  LA+A+ +  +L +LD P   +D   E  ++E       +    I
Sbjct: 157 GIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213

Query: 181 LLISHNLHMVMASTDTVICLNNRICY 206
           L+ S   H+  A  D ++ L+    Y
Sbjct: 214 LVTSKMEHLKKA--DKILILHEGSSY 237


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 49/242 (20%)

Query: 19  HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR--------- 69
            K   +IL+DI+  IKP E+  ++GP GSGK+T+ K + G +   + S            
Sbjct: 124 KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK 183

Query: 70  --HPQLIVGYVPQ------KVTIENTLPLSL------MRFMTLS----MPSSRDDVLQIL 111
              P+  V Y  +      ++T+  TL  +        R+  +S    + +  D +L+IL
Sbjct: 184 EFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL 243

Query: 112 ----DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
                   L+G  N  ++ +SGGE +R  + + L+   ++L  DE  +G+D     + ++
Sbjct: 244 GLDHCADTLVG--NDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD---SSTAFQ 298

Query: 168 LITSVRQST--GCGILLISHNLHMVMASTDTV-----ICL--NNRICYQGPPQTIKDNAE 218
           +I ++RQ         L+S    ++  S +       + L       YQGP   +    E
Sbjct: 299 IIKALRQLAHITGATALVS----ILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354

Query: 219 YI 220
            +
Sbjct: 355 DM 356



 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 35/164 (21%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTI-----AKLITGIIKPTIGSVKRHP------Q 72
           ++L +++   KP  +  L+G +G+GK+T+      +   G I+  I  +   P       
Sbjct: 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFA 863

Query: 73  LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD------VLQILDRVNLIGKY 120
            + GYV Q+      +T+  +L  S      L +P    D      V ++++ + L  +Y
Sbjct: 864 RVSGYVEQQDIHSPELTVRESLRFS----AALRLPKEVSDEEKYEYVEEVIELLEL-KEY 918

Query: 121 NRNI-----KDLSGGEFQRALLAKALLRKPNLLV-LDEPLQGID 158
              +       LS  + +R  +   L+  P+ ++ LDEP  G+D
Sbjct: 919 ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 20  KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSVK--RHPQLI 74
           ++   IL+D +  +KP E+V ++G  GSG ST+ K +    +  +   G +     P   
Sbjct: 17  RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76

Query: 75  VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNIKDLSGGEFQ 133
                    I  +        +T         V + LD  +   G  N  ++ +SGGE +
Sbjct: 77  FAEKYPGEIIYVSEEDVHFPTLT---------VRETLDFALRCKG--NEFVRGISGGERK 125

Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
           R  +A+AL+ + ++L  D   +G+D     +  E++  +R   
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLD---SSTALEILKCIRTMA 165


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 28/203 (13%)

Query: 11  ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
           +S + T   + G +  +L++++ ++   E V L GP+GSGKST+ + +     P  G + 
Sbjct: 10  VSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69

Query: 69  -RH-----------PQLI-------VGYVPQKVTI---ENTLPLSLMRFMTLSMP--SSR 104
            RH           P+ +       +GYV Q + +    + L +     +   +P   +R
Sbjct: 70  VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR 129

Query: 105 DDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
                +L R+NL  + ++      SGGE QR  +A+  +    +L+LDEP   +D     
Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRA 189

Query: 164 SLYELITSVRQSTGCGILLISHN 186
            + ELI   +   G  ++ I H+
Sbjct: 190 VVVELIREAKAR-GAALVGIFHD 211


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%)

Query: 21  NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
            G  ++  + F I+P   + + GPNG GKS++ +++ G+     G +       + Y+PQ
Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552

Query: 81  KVTIENTLPLSLMRFMTLSM-------PSSRD----------DVLQILDRVNL------I 117
           +             +M+          P S +          D+  ILD V+L       
Sbjct: 553 R------------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQRE 600

Query: 118 GKYN--RNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
           G ++  R+ KD LSGGE QR  +A+    +P   +LDE    +    E  +++      +
Sbjct: 601 GGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA----K 656

Query: 175 STGCGILLISH 185
             G  +L I+H
Sbjct: 657 DAGISLLSITH 667


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 35/209 (16%)

Query: 8   TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--G 65
            P++ + N     N  +IL+ +N +I   EI  ++GPNGSGKST++K+I G     I  G
Sbjct: 5   KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64

Query: 66  SVKRHPQLIVGYVPQK-------------VTIENTLPLSLMRFMTLSMPSSRDD------ 106
            +    + I+   P++             + I     +S   F+ L+  S R        
Sbjct: 65  DILFKGESILDLEPEERAHLGIFLAFQYPIEIPG---VSNADFLRLAYNSKRKFQGLPEL 121

Query: 107 --------VLQILDRVNLIGKY-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
                   + + L  V +   + +RN+ +  SGGE +R  + +  L    L +LDE   G
Sbjct: 122 DPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181

Query: 157 IDFPGELSLYELITSVRQSTGCGILLISH 185
           +D      + E I  +  S    I+LI+H
Sbjct: 182 LDIDALKIIAEGINKLMTSENS-IILITH 209


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85
           LQ+++ +I  N +V + G +GSGKST+                        Y   K  + 
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------------LYASGKARLI 51

Query: 86  NTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLR- 143
           + LP    R   + +     D LQ L  V L      + +  LSGGE QR  LA  L   
Sbjct: 52  SFLPK-FSRNKLIFI-----DQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSE 105

Query: 144 -KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
               L +LDEP  G+       L E+I  +    G  ++LI HNL + ++S D +I
Sbjct: 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDV-LSSADWII 159


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 32/198 (16%)

Query: 18  FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68
           + + G  +L++I+F+I P + V L+G  GSGKST+      ++  T G ++         
Sbjct: 12  YTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV 70

Query: 69  --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI-------G 118
             +  +   G +PQKV I   T   +L  +   S     +++ ++ + V L        G
Sbjct: 71  PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS----DEEIWKVAEEVGLKSVIEQFPG 126

Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
           + +  + D    LS G  Q   LA+++L K  +L+LDEP   +D    ++   +  +++Q
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD---PITYQVIRKTLKQ 183

Query: 175 S-TGCGILLISHNLHMVM 191
           +   C ++L  H +  ++
Sbjct: 184 AFADCTVILSEHRIEAML 201


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 127 LSGGEFQRALLAKALLRKPN---LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
           LSGGE QR  LAK L ++     L +LDEP  G+ F     L E++  +    G  +++I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVI 881

Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPPQTIKDNAE 218
            HNL  V+ + D +I L          I   G P+ +     
Sbjct: 882 EHNLD-VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA 922



 Score = 37.8 bits (88), Expect = 0.002
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%)

Query: 121 NRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
           +R+   LSGGE QR  LA  +       L VLDEP  G+       L E +  +R   G 
Sbjct: 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGN 534

Query: 179 GILLISHNLHMVMASTDTVI-------CLNNRICYQGPPQTIKDNAEYIR---LFGTRAT 228
            ++++ H+   + A+ D +I            I  +G P+ +  N E +    L G +  
Sbjct: 535 TVIVVEHDEDTIRAA-DHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTI 593

Query: 229 EI 230
           E+
Sbjct: 594 EV 595



 Score = 34.0 bits (78), Expect = 0.040
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
          L++I+  I  N++V + G +GSGKS++A
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43



 Score = 27.8 bits (62), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
           L++I+  I       + G +GSGKST   LI   + P +
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKST---LINDTLVPAL 652


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 127 LSGGEFQRALLAKALLRK---PNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
           LSGGE QR  LAK L ++     L +LDEP  G+ F     L E++  +    G  +++I
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVI 228

Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPP 210
            HNL  V+   D +I L         ++   G P
Sbjct: 229 EHNLD-VIKCADWIIDLGPEGGDGGGQVVASGTP 261



 Score = 28.2 bits (63), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
          L++I+  I    +  + G +GSGKS+   LI   + P +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSS---LINDTLYPAL 46


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 33/155 (21%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTI---------AKLITGIIKPTIGSVKRHPQLI 74
           ++L +I+  +KP  +  L+G +G+GK+T+         A +ITG I      + ++ Q  
Sbjct: 21  QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS 80

Query: 75  VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134
            GYV Q+                        DV      V    +++  ++ LS  + +R
Sbjct: 81  TGYVEQQ------------------------DVHSPNLTVREALRFSALLRGLSVEQRKR 116

Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
             +   L  KP++L LDEP  G+D     ++   +
Sbjct: 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
           component/CCR4 associated factor [General function
           prediction only, Transcription].
          Length = 291

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 34/201 (16%)

Query: 11  ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPT---- 63
           I +S   F +K    I  D N  +       L+G NG+GK+T+ K+++G  ++       
Sbjct: 14  IEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV 73

Query: 64  -------------------IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSR 104
                              +G        I G VP +  I       ++  +    P  R
Sbjct: 74  LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS---AEHMIFGVGGDDPERR 130

Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
           + ++ ILD ++L  + ++    +S G+ +R  +   LL+   +L+LDE    +D      
Sbjct: 131 EKLIDILD-IDLRWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185

Query: 165 LYELITSVRQSTGCGILLISH 185
           L E +    +  G  I+  +H
Sbjct: 186 LLEFLKEECEQRGATIVYATH 206


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins,
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 226

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTIA---------------------KLITGIIKPTI 64
           L++++  I  N++V + G +GSGKS++A                     + +  + KP +
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70

Query: 65  GSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMT-----LSMPSSRDDVLQILDRVNLIG- 118
            S++     I   + QK T  N  P S +  +T     L +  +R  + + L  +  +G 
Sbjct: 71  DSIEGLSPAIA--IDQKTTSRN--PRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL 126

Query: 119 ---KYNRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVR 173
                +R+   LSGGE QR  LA  +       L VLDEP  G+       L E +  +R
Sbjct: 127 GYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR 186

Query: 174 QSTGCGILLISHNLHMVMASTDTVI 198
              G  +L++ H+   + A+ D VI
Sbjct: 187 DL-GNTVLVVEHDEDTIRAA-DHVI 209


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 36/197 (18%)

Query: 22  GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------- 67
           G   L +IN  I   ++  ++G  G GKS++   I G ++   G V              
Sbjct: 13  GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72

Query: 68  -KRHPQLIVGYVPQK-----VTIENTL----PLSLMRFMTLSMPSSRD---DVLQILDRV 114
            +   +  V Y  QK      T+E  +    P +  R+  ++   S     D+L   D+ 
Sbjct: 73  TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQT 132

Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS---LYELITS 171
             IG+   N   LSGG+ QR  +A+AL +  N++ LD+P   +D    LS   + E I  
Sbjct: 133 E-IGERGIN---LSGGQRQRICVARALYQNTNIVFLDDPFSALDI--HLSDHLMQEGILK 186

Query: 172 VRQSTGCGILLISHNLH 188
             Q     ++L++H L 
Sbjct: 187 FLQDDKRTLVLVTHKLQ 203


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 48/210 (22%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKST----------------------IAKLITGIIKP 62
           +L+ +   IKP + V + G  GSGKS+                      I+KL    ++ 
Sbjct: 36  VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95

Query: 63  TIGSVKRHPQLIVGYV-----PQKVTIENTL----PLSLMRFMTLSMPSSRDDVLQILDR 113
            +  + + P L  G +     P+    ++ L     ++ ++ M  S+P   D V+     
Sbjct: 96  RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV----- 150

Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI-TSV 172
                      ++ S G+ Q   LA+A +RK ++L++DE    ID   E  L +++ T+ 
Sbjct: 151 -------TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF 203

Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN 202
              T   ++ I+H +  ++   D V+ L+ 
Sbjct: 204 ADRT---VVTIAHRVSTIL-DADLVLVLSR 229


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%)

Query: 17  SFHKNGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLI----TGIIKPTIGSVKRHP 71
           SFH+       +I F       +TLI G NG+GK+TI + +    TG + P        P
Sbjct: 11  SFHER-----SEIEFF----SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP 61

Query: 72  QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI--GKYN----RNIK 125
           +LI      +  ++     +  +  T++    R   L IL+ V     G+ N        
Sbjct: 62  KLI-REGEVRAQVKLAFENANGKKYTIT----RS--LAILENVIFCHQGESNWPLLDMRG 114

Query: 126 DLSGGE------FQRALLAKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGC 178
             SGGE        R  LA+       +L LDEP   +D    E SL E+I   +     
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174

Query: 179 GILLISH 185
            +++I+H
Sbjct: 175 QLIVITH 181


>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
           protein expressed in rat epithelial cells which is
           thought to have an important regulatory role in tight
           junction barrier function.  Barmotin belongs to the SMC
           protein family.  SMC proteins are large (approximately
           110 to 170 kDa), and each is arranged into five
           recognizable domains.  Amino-acid sequence homology of
           SMC proteins between species is largely confined to the
           amino- and carboxy-terminal globular domains. The
           amino-terminal domain contains a 'Walker A'
           nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 197

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 45/192 (23%)

Query: 29  INFTIKPNEIVTLIGPNGSGKSTI------------AKLITGIIKPTI---GSVKRHPQL 73
           I F   P  +  ++GPNGSGKS I            AK + G     +   GS  R P  
Sbjct: 18  IPF---PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP-- 72

Query: 74  IVGYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
              +    +T +N+    S++         S+ DV +I+      GK  + +  LSGGE 
Sbjct: 73  -ANFAEVTLTFDNSDGRYSII---------SQGDVSEII---EAPGKKVQRLSLLSGGE- 118

Query: 133 QRALLAKALL------RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
            +AL A ALL      R     VLDE    +D         L+    + T    ++I+H 
Sbjct: 119 -KALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKET--QFIVITHR 175

Query: 187 LHMVMASTDTVI 198
               M + D + 
Sbjct: 176 -KGTMEAADRLY 186


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 42/180 (23%)

Query: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
           Y +  D+ F      +  + GPNGSGKSTI   I   +     + +R   +  G      
Sbjct: 10  YFVPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC----- 62

Query: 83  TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRA----LLA 138
                +       +                              LSGGE + +    +LA
Sbjct: 63  ----IVAAVSAELIFT-------------------------RLQLSGGEKELSALALILA 93

Query: 139 KALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
            A L+   L +LDE  +G+D     +L E I       G  +++I+H    +    D +I
Sbjct: 94  LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHL-PELAELADKLI 151


>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
          virulence [General function prediction only].
          Length = 440

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
          N ++   +++ T   +E   ++GPNGSGK+T+   I   +   I
Sbjct: 9  NNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52


>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
          Length = 423

 Score = 34.2 bits (78), Expect = 0.030
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 24/122 (19%)

Query: 32  TIKPNEIVTLI-GPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQLIVGYVPQKV 82
            + P     LI G  G+ KST+A+ +  ++ P I  V           P+ +      K 
Sbjct: 33  AVDPQIGGALIAGEKGTAKSTLARALADLL-PEIEVVIGCPFNCDPDDPEEMCDECRAKG 91

Query: 83  TIENTLPLSL--MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE--FQRALLA 138
                LP     + F+ L + ++ D ++  LD            K L  G   FQ  LLA
Sbjct: 92  DELEWLPREKRKVPFVALPLGATEDRLVGSLDI----------EKALEEGPKAFQPGLLA 141

Query: 139 KA 140
           +A
Sbjct: 142 RA 143


>gnl|CDD|34333 COG4717, COG4717, Uncharacterized conserved protein [Function
          unknown].
          Length = 984

 Score = 34.3 bits (78), Expect = 0.034
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQL 73
           S    GY    + +F    ++   + G N +GKST+   I  ++   PT     R    
Sbjct: 4  QSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSKYPRLEPK 63

Query: 74 IVGYVPQKVTIENTL 88
            G    ++   +  
Sbjct: 64 QGGQYGGRLVAIDRE 78


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes
          are implicated in the metabolism of DNA ends. They
          cleave ends sealed by hairpin structures and are
          thought to play a role in removing protein bound to DNA
          termini..
          Length = 213

 Score = 34.1 bits (78), Expect = 0.041
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 21 NGYKILQDINFT-IKPNEIVTLIGPNGSGKSTIAKLIT 57
            ++  Q I+FT +  N +  + GP G+GKSTI   IT
Sbjct: 12 GPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAIT 49


>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
          reversible phosphorylation of cytidine monophosphate
          (CMP) to produce cytidine diphosphate (CDP), using ATP
          as the preferred phosphoryl donor..
          Length = 147

 Score = 33.6 bits (77), Expect = 0.054
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          I+ + GP GSGKST+AKL+
Sbjct: 1  IIAIDGPAGSGKSTVAKLL 19


>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
           (vWA) domain [General function prediction only].
          Length = 4600

 Score = 33.5 bits (76), Expect = 0.055
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 8   TPLISLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
            P+ISLS  SF        +L+ + + I+ NE   L+G  G+GK+T+ + +   +   + 
Sbjct: 434 IPIISLSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLT 493

Query: 66  SVKRHPQ 72
            + +  Q
Sbjct: 494 VINKSQQ 500


>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 212

 Score = 33.3 bits (76), Expect = 0.058
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 24/139 (17%)

Query: 41  LIGPNGSGKSTI------------AKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88
           ++GPNGSGKS +            +K+    +   I +   HP L    V  +V  +  +
Sbjct: 30  IVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV--EVHFQEII 87

Query: 89  PLSLMRFMTLSMPSSRDDVLQ-ILDRVNLIGKYN-RNIKDLSGGEFQRALLAKALL---- 142
              L++   + +  +R  +LQ  ++++  + K + +NI +LSGGE  + L + AL+    
Sbjct: 88  DKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGE--KTLSSLALVFALH 145

Query: 143 -RKPN-LLVLDEPLQGIDF 159
             KP  L V+DE    +DF
Sbjct: 146 HYKPTPLYVMDEIDAALDF 164


>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
          Magnesium-chelatase is a three-component enzyme that
          catalyses the insertion of Mg2+ into protoporphyrin IX.
          This is the first unique step in the synthesis of
          (bacterio)chlorophyll. Due to this, it is thought that
          Mg-chelatase has an important role in channelling
          inter- mediates into the (bacterio)chlorophyll branch
          in response to conditions suitable for photosynthetic
          growth. ChlI and BchD have molecular weight between
          38-42 kDa.
          Length = 207

 Score = 32.9 bits (76), Expect = 0.076
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 39 VTLIGPNGSGKSTIAKLITGIIKP 62
          + +IGP GSGK+ +AK + GI+ P
Sbjct: 25 LLMIGPPGSGKTMLAKRLPGILPP 48


>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 222

 Score = 32.5 bits (74), Expect = 0.10
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56
          +K   I+ + GP GSGKST+AK++
Sbjct: 1  MKAAIIIAIDGPAGSGKSTVAKIL 24


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
          recombination, and repair].
          Length = 908

 Score = 32.3 bits (73), Expect = 0.13
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 21 NGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLIT 57
            ++  +DI+     +  + LI GPNG+GKS+I   IT
Sbjct: 9  KNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAIT 46


>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
           secretion].
          Length = 407

 Score = 31.8 bits (72), Expect = 0.16
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 30  NFTIKPNEIVTLIGPNGSGKST-IAKL 55
           N  ++   ++ L+GP G GK+T +AKL
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTLAKL 223


>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
          shikimate pathway, a seven-step biosynthetic pathway
          which converts erythrose-4-phosphate to chorismic acid,
          found in bacteria, fungi and plants. Chorismic acid is
          a important intermediate in the synthesis of aromatic
          compounds, such as aromatic amino acids, p-aminobenzoic
          acid, folate and ubiquinone. Shikimate kinase catalyses
          the phosphorylation of the 3-hydroxyl group of shikimic
          acid using ATP..
          Length = 154

 Score = 31.3 bits (71), Expect = 0.25
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
           + LIG  G+GK+T+ +L+
Sbjct: 1  NIVLIGMMGAGKTTVGRLL 19


>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 408

 Score = 31.3 bits (71), Expect = 0.26
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 21  NGYKILQDINFTIKPNEI------VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
           N YK    +N     +++      + LIGP GSGK+ +A+ +  I+              
Sbjct: 79  NHYK---RLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135

Query: 75  VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI---KDLSGGE 131
            GYV + V  EN L L L++     +  +   ++ I D ++ I + + N    +D+SG  
Sbjct: 136 AGYVGEDV--ENIL-LKLLQAADYDVERAERGIIYI-DEIDKIARKSENPSITRDVSGEG 191

Query: 132 FQRALL 137
            Q+ALL
Sbjct: 192 VQQALL 197


>gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing
          and modification].
          Length = 674

 Score = 31.0 bits (70), Expect = 0.32
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKST 51
          YK    I + ++ N+++ +IG  GSGKST
Sbjct: 53 YKYRDQILYAVEDNQVLIVIGETGSGKST 81


>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
          transport and metabolism].
          Length = 178

 Score = 30.6 bits (69), Expect = 0.34
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 39 VTLIGPNGSGKSTIAKLIT 57
          + ++GP G+GKST+AK + 
Sbjct: 3  ILILGPPGAGKSTLAKKLA 21


>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
          subunit (SR-beta).  SR-beta and SR-alpha form the
          heterodimeric signal recognition particle (SRP or SR)
          receptor that binds SRP to regulate protein
          translocation across the ER membrane.  Nascent
          polypeptide chains are synthesized with an N-terminal
          hydrophobic signal sequence that binds SRP54, a
          component of the SRP.  SRP directs targeting of the
          ribosome-nascent chain complex (RNC) to the ER membrane
          via interaction with the SR, which is localized to the
          ER membrane.  The RNC is then transferred to the
          protein-conducting channel, or translocon, which
          facilitates polypeptide translation across the ER
          membrane or integration into the ER membrane.  SR-beta
          is found only in eukaryotes; it is believed to control
          the release of the signal sequence from SRP54 upon
          binding of the ribosome to the translocon.  High
          expression of SR-beta has been observed in human colon
          cancer, suggesting it may play a role in the
          development of this type of cancer.
          Length = 203

 Score = 30.7 bits (70), Expect = 0.37
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68
          V L+GP+ SGK+ +  KL TG  + T+ S++
Sbjct: 3  VLLLGPSDSGKTALFTKLTTGKYRSTVTSIE 33


>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
          transfer from ATP to gluconate. The resulting product
          gluconate-6-phoshate is an important precursor of
          gluconate metabolism. GntK acts as a dimmer composed of
          two identical subunits..
          Length = 150

 Score = 30.6 bits (69), Expect = 0.42
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          I+ ++G +GSGKST+ K +
Sbjct: 1  IIVVMGVSGSGKSTVGKAL 19


>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
          metabolism].
          Length = 172

 Score = 30.6 bits (69), Expect = 0.45
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 35 PNEIVTLIGPNGSGKSTIAKLI 56
           N  + LIG  G+GKSTI + +
Sbjct: 1  RNMNIVLIGFMGAGKSTIGRAL 22


>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
          prediction only].
          Length = 149

 Score = 29.8 bits (67), Expect = 0.59
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
          +K  ++V L G  G+GK+T+ +   GI K
Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVR---GIAK 47


>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain
          is found at the N terminus of SMC proteins. The SMC
          (structural maintenance of chromosomes) superfamily
          proteins have ATP-binding domains at the N- and
          C-termini, and two extended coiled-coil domains
          separated by a hinge in the middle. The eukaryotic SMC
          proteins form two kind of heterodimers: the SMC1/SMC3
          and the SMC2/SMC4 types. These heterodimers constitute
          an essential part of higher order complexes, which are
          involved in chromatin and DNA dynamics. This family
          also includes the RecF and RecN proteins that are
          involved in DNA metabolism and recombination.
          Length = 1162

 Score = 29.9 bits (67), Expect = 0.62
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 41 LIGPNGSGKSTI 52
          ++GPNGSGKS I
Sbjct: 28 IVGPNGSGKSNI 39



 Score = 29.2 bits (65), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 113  RVNLIGKYNRNIKDLSGGEFQRALLAKALL-----RKPN-LLVLDE 152
                 GK  +N+ +LSGGE  + L+A AL+      +P    +LDE
Sbjct: 1065 SARPPGKGVKNLDNLSGGE--KTLVALALIFAIQKYRPAPFYLLDE 1108


>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
          chromosome partitioning].
          Length = 1163

 Score = 30.0 bits (67), Expect = 0.66
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 42 IGPNGSGKSTI 52
          +GPNGSGKS I
Sbjct: 30 VGPNGSGKSNI 40


>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
          large (approximately 110 to 170 kDa), and each is
          arranged into five recognizable domains.  Amino-acid
          sequence homology of SMC proteins between species is
          largely confined to the amino- and carboxy-terminal
          globular domains. The amino-terminal domain contains a
          'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
          the single-letter amino-acid code), which by mutational
          studies has been shown to be essential in several
          proteins.  The carboxy-terminal domain contains a
          sequence (the DA-box) that resembles a 'Walker B'
          motif, and a motif with homology to the signature
          sequence of the ATP-binding cassette (ABC) family of
          ATPases.  The sequence homology within the
          carboxy-terminal domain is relatively high within the
          SMC1-SMC4 group, whereas SMC5 and SMC6 show some
          divergence in both of these sequences.  In eukaryotic
          cells, the proteins are found as heterodimers of SMC1
          paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
          (formerly known as Rad18)..
          Length = 213

 Score = 29.7 bits (67), Expect = 0.67
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 41 LIGPNGSGKSTIAKLI 56
          +IGPNGSGKS+I   I
Sbjct: 28 IIGPNGSGKSSIVCAI 43


>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
          protein SMC5/Spr18, SMC superfamily [Chromatin
          structure and dynamics, Cell cycle control, cell
          division, chromosome partitioning, Replication,
          recombination and repair].
          Length = 1072

 Score = 29.5 bits (66), Expect = 0.73
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 41 LIGPNGSGKSTIA 53
          +IGPNGSGKS+I 
Sbjct: 47 IIGPNGSGKSSIV 59


>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
           (SMC) proteins are essential for successful chromosome
           transmission during replication and segregation of the
           genome in all organisms.  SMCs are generally present as
           single proteins in bacteria, and as at least six
           distinct proteins in eukaryotes.  The proteins range in
           size from approximately 110 to 170 kDa, and each has
           five distinct domains: amino- and carboxy-terminal
           globular domains, which contain sequences characteristic
           of ATPases, two coiled-coil regions separating the
           terminal domains , and a central flexible hinge.  SMC
           proteins function together with other proteins in a
           range of chromosomal transactions, including chromosome
           condensation, sister-chromatid cohesion, recombination,
           DNA repair, and epigenetic silencing of gene
           expression..
          Length = 178

 Score = 29.4 bits (66), Expect = 0.85
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 29/177 (16%)

Query: 35  PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMR 94
            N    ++GPNGSGKS I   I                 ++G   +   +     L L  
Sbjct: 21  SNSFNAIVGPNGSGKSNIVDAI---------------CFVLGG--KAAKLRRGSLLFLAG 63

Query: 95  FMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALL-------RKPNL 147
               +  +S   V    D+   +    +  + LSGGE  ++L A AL+         P  
Sbjct: 64  GGVKAGINS-ASVEITFDKSYFLVLQGKVEQILSGGE--KSLSALALIFALQEIKPSP-F 119

Query: 148 LVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNR 203
            VLDE    +D      + ++I  + + T   I++         A     V+ ++  
Sbjct: 120 YVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVHGV 176


>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
           only].
          Length = 733

 Score = 29.3 bits (65), Expect = 0.86
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
           K L+ I    K + +V L  P G GK T A LI  +    +    +    ++  +P +  
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGK-TEASLILALAL--LDEKIKLKSRVIYVLPFRTI 258

Query: 84  IE 85
           IE
Sbjct: 259 IE 260


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
          also known as guanylate kinase (GKase), catalyzes the
          reversible phosphoryl transfer from adenosine
          triphosphate (ATP) to guanosine monophosphate (GMP) to
          yield adenosine diphosphate (ADP) and guanosine
          diphosphate (GDP). It plays an essential role in the
          biosynthesis of guanosine triphosphate (GTP). This
          enzyme is also important for the activation of some
          antiviral and anticancer agents, such as acyclovir,
          ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score = 29.3 bits (66), Expect = 0.88
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIG 65
          ++ L GP+G GKST+ K +     P  G
Sbjct: 1  LIVLSGPSGVGKSTLLKRLLEEFDPNFG 28


>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
          phosphoryl transfer from adenosine triphosphates (ATP)
          to adenosine monophosphates (AMP) and to yield
          adenosine diphosphates (ADP). This enzyme is required
          for the biosynthesis of ADP and is essential for
          homeostasis of adenosine phosphates..
          Length = 194

 Score = 29.4 bits (66), Expect = 0.98
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
           + L+GP GSGK T A+ +
Sbjct: 1  RILLLGPPGSGKGTQAERL 19


>gnl|CDD|144099 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16.  This family
           includes small ribosomal subunit S9 from prokaryotes and
           S16 from eukaryotes.
          Length = 121

 Score = 29.3 bits (67), Expect = 1.0
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 22/87 (25%)

Query: 81  KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF--Q----- 133
           K+TI N  PL           + R  +L+ L+    +GK++  +  + GG    Q     
Sbjct: 18  KITI-NGKPLEEY----FPNETLRMKILEPLELTGTLGKFDIVVT-VKGGGISGQAGAIR 71

Query: 134 ----RALLA-----KALLRKPNLLVLD 151
               RAL+A     +  L+K  LL  D
Sbjct: 72  LAIARALVAYDPELRPELKKAGLLTRD 98


>gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction
           only].
          Length = 517

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 38  IVTLIGPNGSGKSTIAKLITGII 60
           +  L GP G+GKST   LI+ ++
Sbjct: 232 LFWLYGPGGNGKSTFVDLISNLL 254


>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
           of the Holliday junction resolvase [Replication,
           recombination and repair].
          Length = 554

 Score = 29.3 bits (65), Expect = 1.1
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 33  IKPNEIVTLI--GPNGSGKSTIAKLIT 57
           I+ N I ++I  GP G+GK+T+A+LI 
Sbjct: 157 IEQNRIPSMILWGPPGTGKTTLARLIA 183


>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain. 
          Length = 285

 Score = 29.2 bits (66), Expect = 1.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          +V ++G  G GK+T+AK I
Sbjct: 21 VVGIVGMGGVGKTTLAKQI 39


>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
          function prediction only].
          Length = 398

 Score = 29.2 bits (65), Expect = 1.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 27 QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
          + I        I+ ++GP   GK+T+ KL+   +   I
Sbjct: 28 RLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEI 65


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 29.0 bits (65), Expect = 1.2
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 36  NEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
            +   L+G +G GKST+   +   +    G +
Sbjct: 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192


>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
           trafficking and secretion].
          Length = 340

 Score = 29.1 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
             +I    KP  I+  +G NG GK+T IAKL
Sbjct: 130 PLEIPKEKKPFVIL-FVGVNGVGKTTTIAKL 159


>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
           RAD17/RAD24 component [Energy production and conversion,
           Replication, recombination and repair].
          Length = 634

 Score = 28.9 bits (64), Expect = 1.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 35  PNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
            + I+ L GP+G GKST  K+++  +   +
Sbjct: 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQL 138


>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
          Holliday junction resolvase [DNA replication,
          recombination, and repair].
          Length = 436

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 41 LIGPNGSGKSTIAKLITGIIK 61
          L GP G+GK+T+A+LI G   
Sbjct: 53 LWGPPGTGKTTLARLIAGTTN 73


>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 179

 Score = 28.7 bits (64), Expect = 1.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          ++T+ G  GSGK+T+A+ +
Sbjct: 2  VITISGLPGSGKTTVAREL 20


>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
          activities (AAA).  AAA family proteins often perform
          chaperone-like functions that assist in the assembly,
          operation, or disassembly of protein complexes.
          Length = 131

 Score = 28.7 bits (65), Expect = 1.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 41 LIGPNGSGKSTIAKLI 56
          L GP G+GK+T+AK +
Sbjct: 3  LYGPPGTGKTTLAKAV 18


>gnl|CDD|30190 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
          as thymidylate kinase, catalyzes the phosphorylation of
          thymidine monophosphate (TMP) to thymidine diphosphate
          (TDP) utilizing ATP as its preferred phophoryl donor.
          TMPK represents the rate-limiting step in either de
          novo or salvage biosynthesis of thymidine triphosphate
          (TTP)..
          Length = 200

 Score = 28.7 bits (64), Expect = 1.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62
           +   G +G+GK+T+ +L+   ++ 
Sbjct: 2  FIVFEGIDGAGKTTLIELLAERLEA 26


>gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein.  PhoH is a cytoplasmic
          protein and predicted ATPase that is induced by
          phosphate starvation.
          Length = 205

 Score = 28.6 bits (65), Expect = 1.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 33 IKPNEIVTLIGPNGSGKSTIA 53
          I+ N+IV  IGP G+GK+ +A
Sbjct: 16 IRKNDIVFGIGPAGTGKTYLA 36


>gnl|CDD|73295 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
          superfamily consisting of multiple families of enzymes
          that share structural similarity and are functionally
          related to the catalysis of the reversible phosphate
          group transfer from nucleoside triphosphates to
          nucleosides/nucleotides, nucleoside monophosphates, or
          sugars. Members of this family play a wide variety of
          essential roles in nucleotide metabolism, the
          biosynthesis of coenzymes and aromatic compounds, as
          well as the metabolism of sugar and sulfate..
          Length = 69

 Score = 28.8 bits (64), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 38 IVTLIGPNGSGKSTIAKLIT 57
          I+ + G +GSGKST+AK + 
Sbjct: 1  IIAITGGSGSGKSTVAKKLA 20


>gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain.  This family
          includes relatives of the G-domain of the SRP54 family
          of proteins.
          Length = 196

 Score = 28.7 bits (65), Expect = 1.7
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)

Query: 38 IVTLIGPNGSGKST-IAKL 55
          ++ L+G  GSGK+T IAKL
Sbjct: 3  VILLVGLQGSGKTTTIAKL 21


>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and
          metabolism].
          Length = 218

 Score = 28.7 bits (64), Expect = 1.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62
          I+ + G +GSGK+T+AK ++  +  
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGV 34


>gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor,
          beta subunit (small G protein superfamily)
          [Intracellular trafficking, secretion, and vesicular
          transport].
          Length = 238

 Score = 28.4 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68
          V L+G + SGK+++  +LITG  + T+ S++
Sbjct: 41 VLLVGLSDSGKTSLFTQLITGSHRGTVTSIE 71


>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
           the AAA+-type ATPase domain [Posttranslational
           modification, protein turnover, chaperones].
          Length = 953

 Score = 28.4 bits (63), Expect = 1.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 33  IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
           ++    + L GP G+GK+ +AK +         SVK  P+L+  YV Q
Sbjct: 702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK-GPELLNMYVGQ 748


>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
          protein 1 (sister chromatid cohesion complex Cohesin,
          subunit SMC1) [Cell cycle control, cell division,
          chromosome partitioning].
          Length = 1141

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 32 TIKPNEIVT-LIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQLIVGYVPQKV 82
           I P +  T +IGPNGSGKS +   I+ ++  K +   V     LI G   +K 
Sbjct: 20 VIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKP 73


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
          cellular Activities) superfamily represents an ancient
          group of ATPases belonging to the ASCE (for additional
          strand, catalytic E) division of the P-loop NTPase
          fold. The ASCE division also includes ABC, RecA-like,
          VirD4-like, PilT-like, and SF1/2 helicases. Members of
          the AAA+ ATPases function as molecular chaperons,
          ATPase subunits of proteases, helicases, or
          nucleic-acid stimulated ATPases. The AAA+ proteins
          contain several distinct features in addition to the
          conserved alpha-beta-alpha core domain structure and
          the Walker A and B motifs of the P-loop NTPases..
          Length = 151

 Score = 28.3 bits (63), Expect = 2.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 41 LIGPNGSGKSTIAKLI 56
          L GP G+GK+T+A+ I
Sbjct: 24 LYGPPGTGKTTLARAI 39


>gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate
          transport and metabolism].
          Length = 191

 Score = 28.4 bits (63), Expect = 2.0
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 29 INFTIKP-NEIVTLIGPNGSGKSTIAKLI 56
           + T+ P   ++ ++G +GSGKSTI K +
Sbjct: 4  KHKTMGPFKYVIVVMGVSGSGKSTIGKAL 32


>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein.  IVa2 protein can
           interact with the adenoviral packaging signal and that
           this interaction involves DNA sequences that have
           previously been demonstrated to be required for
           packaging. During the course of lytic infection, the
           adenovirus major late promoter (MLP) is induced to high
           levels after replication of viral DNA has started. IVa2
           is a transcriptional activator of the major late
           promoter.
          Length = 370

 Score = 28.1 bits (63), Expect = 2.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 26  LQDINFTIKPNEIVTLIGPNGSGKSTI--AKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
           L  +N+ ++P  I  + GP G GKS +    L   +I+P        P+ +    PQK  
Sbjct: 78  LPSLNYGLQPV-IGVVYGPTGCGKSQLLRNLLSCQLIQPI-------PETVFFITPQKDM 129

Query: 84  I 84
           I
Sbjct: 130 I 130


>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication,
          recombination, and repair].
          Length = 845

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKST 51
             +  +I   I+ N++V ++G  GSGK+T
Sbjct: 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTT 80


>gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
          metabolism].
          Length = 208

 Score = 27.9 bits (62), Expect = 2.5
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--RHP 71
           + + G +G+GK+T A+L+   ++     V   R P
Sbjct: 5  FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREP 40


>gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex,
           ATPase RPT4 [Posttranslational modification, protein
           turnover, chaperones].
          Length = 388

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 33  IKPNEIVTLIGPNGSGKSTIAKLI 56
           IKP + + L GP G+GK+ +A+ +
Sbjct: 163 IKPPKGLLLYGPPGTGKTLLARAV 186


>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
          Translocation is mediated by EF-G (also called
          translocase).  The structure of EF-G closely resembles
          that of the complex between EF-Tu and tRNA.  This is an
          example of molecular mimicry; a protein domain evolved
          so that it mimics the shape of a tRNA molecule.  EF-G
          in the GTP form binds to the ribosome, primarily
          through the interaction of its EF-Tu-like domain with
          the 50S subunit.  The binding of EF-G to the ribosome
          in this manner stimulates the GTPase activity of EF-G. 
          On GTP hydrolysis, EF-G undergoes a conformational
          change that forces its arm deeper into the A site on
          the 30S subunit.  To accommodate this domain, the
          peptidyl-tRNA in the A site moves to the P site,
          carrying the mRNA and the deacylated tRNA with it.  The
          ribosome may be prepared for these rearrangements by
          the initial binding of EF-G as well.  The dissociation
          of EF-G leaves the ribosome ready to accept the next
          aminoacyl-tRNA into the A site.  This group contains
          only bacterial members.
          Length = 268

 Score = 27.9 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)

Query: 39 VTLIGPNGSGKSTIAKLI---TGIIKPTIGSVKR 69
          + L+G +GSGK+T+A+ +   TG I   +GSV+ 
Sbjct: 2  IALVGHSGSGKTTLAEALLYATGAI-DRLGSVED 34


>gnl|CDD|33396 COG3596, COG3596, Predicted GTPase [General function prediction
          only].
          Length = 296

 Score = 27.6 bits (61), Expect = 2.8
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 5  LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKS-TIAKLITGIIKPT 63
           ++   +    +   +   + L+ +  T K    V L+G  G+GKS  I  L  G +K  
Sbjct: 8  NNVLKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEV 67


>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
           assembly pathway, ATPase PilB [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 500

 Score = 27.6 bits (61), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 34  KPNEIVTLIGPNGSGKST 51
           +P  ++ + GP GSGK+T
Sbjct: 256 RPQGLILVTGPTGSGKTT 273


>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
          ATPase/SMC superfamily [Replication, recombination and
          repair].
          Length = 1294

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 5/29 (17%)

Query: 39 VTLI-GPNGSGKSTIAKLI----TGIIKP 62
          +TLI G NG+GK+TI + +    TG + P
Sbjct: 29 LTLIVGANGTGKTTIIECLKYATTGELPP 57


>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
          Length = 638

 Score = 27.7 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 30  NFTIKPNEI---VTLIGPNGSGKSTIAKLITG 58
            FT    +I   V L+GP G+GK+ +AK I G
Sbjct: 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238


>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein
          [General function prediction only].
          Length = 398

 Score = 27.6 bits (61), Expect = 3.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 33 IKPNEIVTLIGPNGSGKSTIAKLIT 57
               +V ++GP  SGKST+   + 
Sbjct: 70 AGKVGVVMVVGPVDSGKSTLTTYLA 94


>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
          metabolism].
          Length = 191

 Score = 27.4 bits (61), Expect = 3.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          ++ L GP+G GKST+ K +
Sbjct: 6  LIVLSGPSGVGKSTLVKAL 24


>gnl|CDD|32375 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 555

 Score = 27.6 bits (61), Expect = 3.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 165 LYELITSVRQSTGCGILL-ISHNLH---MVMASTDTVICL 200
            Y L+ + ++ TG G+LL  S N+H   +V +  D +   
Sbjct: 497 YYGLLRAFKERTGVGVLLNTSFNVHGEPIVCSPADAIRTF 536


>gnl|CDD|58497 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like
           subfamily of SGNH-hydrolases. Platelet-activating factor
           (PAF) and PAF-AH are key players in inflammation and in
           atherosclerosis. PAF-AH is a calcium independent
           phospholipase A2 which exhibits strong substrate
           specificity towards PAF, hydrolyzing an acetyl ester at
           the sn-2 position. PAF-AH also degrades a family of
           oxidized PAF-like phospholipids with short sn-2
           residues.  In addition,  PAF and PAF-AH are associated
           with neural migration and mammalian reproduction..
          Length = 214

 Score = 27.5 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 33  IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
           + P  +V LIG N  G +T A+ I   I   +  ++  
Sbjct: 88  VNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREK 125


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
           biogenesis [Translation, ribosomal structure and
           biogenesis].
          Length = 1077

 Score = 27.4 bits (60), Expect = 4.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 35  PNEIVTLIGPNGSGKSTIAK-LITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
           P  IV ++GP G+GKST+ + L+    K TI  + R P  +V    +++T 
Sbjct: 68  PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI-RGPITVVSGKTRRITF 117


>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
           modification, protein turnover, chaperones].
          Length = 494

 Score = 27.1 bits (59), Expect = 4.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 30  NFTIKPNEIVTLIGPNGSGKSTIAKLI 56
              ++P + V L GP G+GK+ +AK +
Sbjct: 270 KLGLRPPKGVLLYGPPGTGKTLLAKAV 296


>gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA
           helicase [RNA processing and modification].
          Length = 1042

 Score = 27.3 bits (60), Expect = 4.2
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 27/134 (20%)

Query: 27  QDINFTIKPNEIVTLIGPNGSGKST-IAKLI-------TGIIKPTIGSVKRHPQLIVGYV 78
             +   I+ N++V ++G  GSGK+T +A+ +        G+I  T               
Sbjct: 362 DQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCT--------------Q 407

Query: 79  PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLA 138
           P++V       +S+ + +   M  +  D +    R   +   +  IK ++ G   R  L 
Sbjct: 408 PRRVA-----AISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLK 462

Query: 139 KALLRKPNLLVLDE 152
              L K +++++DE
Sbjct: 463 DRDLDKYSVIIMDE 476


>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
           protein 4 (chromosome condensation complex Condensin,
           subunit C) [Chromatin structure and dynamics, Cell cycle
           control, cell division, chromosome partitioning].
          Length = 1293

 Score = 27.2 bits (60), Expect = 4.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 41  LIGPNGSGKSTI 52
           ++GPNGSGKS +
Sbjct: 113 IVGPNGSGKSNV 124


>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA
          mismatch repair by recognizing mispaired and unpaired
          bases embedded in duplex DNA and activating endo- and
          exonucleases to remove the mismatch.  Members of the
          MutS family also possess a conserved ATPase activity
          that belongs to the ATP binding cassette (ABC)
          superfamily.  MutS homologs (MSH) have been identified
          in most prokaryotic and all eukaryotic organisms
          examined.  Prokaryotes have two homologs (MutS1 and
          MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
          been identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 202

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLI 56
          +  +    ++ + GPN  GKST  + I
Sbjct: 23 DINLGSGRLLLITGPNMGGKSTYLRSI 49


>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
          [Coenzyme metabolism].
          Length = 187

 Score = 27.2 bits (60), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPT 63
           V ++G   SGKST+   +  I   T
Sbjct: 10 TVAILGGESSGKSTLVNKLANIFNTT 35


>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
          large (approximately 110 to 170 kDa), and each is
          arranged into five recognizable domains.  Amino-acid
          sequence homology of SMC proteins between species is
          largely confined to the amino- and carboxy-terminal
          globular domains. The amino-terminal domain contains a
          'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
          the single-letter amino-acid code), which by mutational
          studies has been shown to be essential in several
          proteins.  The carboxy-terminal domain contains a
          sequence (the DA-box) that resembles a 'Walker B'
          motif, and a motif with homology to the signature
          sequence of the ATP-binding cassette (ABC) family of
          ATPases.  The sequence homology within the
          carboxy-terminal domain is relatively high within the
          SMC1-SMC4 group, whereas SMC5 and SMC6 show some
          divergence in both of these sequences.  In eukaryotic
          cells, the proteins are found as heterodimers of SMC1
          paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
          (formerly known as Rad18)..
          Length = 247

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 41 LIGPNGSGKSTI 52
          +IGPNGSGKS +
Sbjct: 27 IIGPNGSGKSNL 38


>gnl|CDD|33381 COG3581, COG3581, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 420

 Score = 27.2 bits (60), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI------CLNNRICYQGPPQTIKDN 216
           S+   TG G  L    L ++ +  D VI      C+ N I  +G  + +K +
Sbjct: 310 SLGNKTGEGWFLTGEMLELIESGVDNVICLQPFGCMPNHIVSKGMIKGLKRD 361


>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is
          the main terminal branch of the general secretory
          pathway (GSP).  It is responsible for the export the
          majority of Gram-negative bacterial exoenzymes and
          toxins. PulE is a cytoplasmic protein of the GSP, which
          contains an ATP binding site and a tetracysteine motif.
          This subgroup also includes PillB and HofB..
          Length = 264

 Score = 27.1 bits (60), Expect = 4.6
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 8  TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKST 51
            ++ L          +I + +    KP+ I+ + GP GSGK+T
Sbjct: 54 NQILDLEKLGLKPENLEIFRKL--LEKPHGIILVTGPTGSGKTT 95


>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
          helicases. Helicases couple NTP hydrolysis to the
          unwinding of nucleic acid duplexes into their component
          strands..
          Length = 271

 Score = 27.2 bits (60), Expect = 4.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST 51
          L  +   ++  E++ L    G GK+T
Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTT 45


>gnl|CDD|114021 pfam05272, VirE, Virulence-associated protein E.  This family
          contains several bacterial virulence-associated protein
          E like proteins.
          Length = 198

 Score = 27.0 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITG 58
           K + ++ L G  GSGKST  K + G
Sbjct: 49 CKFDHVLILQGAQGSGKSTFLKKLGG 74


>gnl|CDD|111445 pfam02545, Maf, Maf-like protein.  Maf is a putative inhibitor of
           septum formation in eukaryotes, bacteria, and archaea.
          Length = 193

 Score = 26.9 bits (60), Expect = 5.0
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 186 NLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIR 221
           +  +++ + DTV+ L  RI   G P+  ++  E +R
Sbjct: 63  DNALIIGA-DTVVILGGRI--LGKPKDKEEAREMLR 95


>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
          only].
          Length = 300

 Score = 26.9 bits (59), Expect = 5.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 38 IVTLIGPNGSGKSTIAKLI 56
          IV + GP GSGKST++ LI
Sbjct: 52 IVGISGPQGSGKSTLSALI 70


>gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex,
           ATPase RPT1 [Posttranslational modification, protein
           turnover, chaperones].
          Length = 435

 Score = 26.9 bits (59), Expect = 5.2
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 29  INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----IGSVKRHPQLIVGYVPQKVTI 84
           +N  I P + V L GP G+GK+  A+ +           IGS     +L+  YV +   +
Sbjct: 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS-----ELVQKYVGEGARM 258

Query: 85  ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG--EFQRALL 137
              L           M  ++   +   D ++ IG       D +GG  E QR +L
Sbjct: 259 VREL---------FEMARTKKACIIFFDEIDAIG--GARFDDGAGGDNEVQRTML 302


>gnl|CDD|38288 KOG3078, KOG3078, KOG3078, Adenylate kinase [Nucleotide transport
          and metabolism].
          Length = 235

 Score = 26.8 bits (59), Expect = 5.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 41 LIGPNGSGKSTIAKLIT 57
          L+G  GSGK T A  +T
Sbjct: 20 LLGAPGSGKGTQAPRLT 36


>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
           factor type A (vWA) domain [General function prediction
           only].
          Length = 1856

 Score = 26.9 bits (59), Expect = 5.4
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 13  LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72
            S  +F ++   +L+ I   ++ NE + L+G  G GK+++ + +  ++   +  V    Q
Sbjct: 42  GSTFAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQ 101

Query: 73  -----LIVGYVPQKVTIENTLPLSLMR 94
                L+ GY P  V    +LPLS   
Sbjct: 102 SDSSDLLGGYKP--VNDYLSLPLSKPF 126


>gnl|CDD|73035 cd03276, ABC_SMC6_euk, Eukaryotic SMC6 proteins; SMC proteins are
          large (approximately 110 to 170 kDa), and each is
          arranged into five recognizable domains.  Amino-acid
          sequence homology of SMC proteins between species is
          largely confined to the amino- and carboxy-terminal
          globular domains. The amino-terminal domain contains a
          'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
          the single-letter amino-acid code), which by mutational
          studies has been shown to be essential in several
          proteins.  The carboxy-terminal domain contains a
          sequence (the DA-box) that resembles a 'Walker B'
          motif, and a motif with homology to the signature
          sequence of the ATP-binding cassette (ABC) family of
          ATPases.  The sequence homology within the
          carboxy-terminal domain is relatively high within the
          SMC1-SMC4 group, whereas SMC5 and SMC6 show some
          divergence in both of these sequences.  In eukaryotic
          cells, the proteins are found as heterodimers of SMC1
          paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
          (formerly known as Rad18)..
          Length = 198

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
          I+L N   H++       I F  + N IV   G NGSGKS I   +T + 
Sbjct: 4  ITLKNFMCHRHL-----QIEFGPRVNFIV---GNNGSGKSAI---LTALT 42


>gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex,
           ATPase RPT5 [Posttranslational modification, protein
           turnover, chaperones].
          Length = 424

 Score = 26.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 30  NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
           N  I+P + V + GP G+GK+ +A+        T   +   PQL+  ++
Sbjct: 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQMFI 246


>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein. 
          Length = 490

 Score = 26.9 bits (59), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
              I+ L GP+G GKST  K+++  +   I
Sbjct: 43 NKQLILLLTGPSGCGKSTTVKVLSKELGIEI 73


>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
           unknown].
          Length = 374

 Score = 26.5 bits (58), Expect = 5.9
 Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 19/159 (11%)

Query: 29  INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88
           IN  I    +   IGPN SGKST  + +  I      S          Y   K   E   
Sbjct: 14  INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEEYLQ 73

Query: 89  PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
            L L          + + V +   RV  +   +   +  SG E    +  +   R+    
Sbjct: 74  WLQL---------RAVNVVEKGFRRVFGLNLQDLTTRGASGEELILTVKHR---RERVKY 121

Query: 149 VLDEPLQGIDFP-------GELSLYELITSVRQSTGCGI 180
           +L  PL  + F        G  ++Y L   +R     G 
Sbjct: 122 ILKWPLVSLKFEYLKAERRGPRNVYALFDYLRSRNLLGA 160


>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
          [Inorganic ion transport and metabolism].
          Length = 197

 Score = 26.7 bits (59), Expect = 5.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 14 SNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIA 53
           N  +H +     +      +   ++   G +GSGKSTIA
Sbjct: 1  ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIA 40


>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 693

 Score = 26.8 bits (59), Expect = 6.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 31  FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
           F I P + V L GP G GK+ +AK +         SVK  P+L   YV
Sbjct: 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK-GPELFSKYV 509


>gnl|CDD|32910 COG3096, MukB, Uncharacterized protein involved in chromosome
          partitioning [Cell division and chromosome
          partitioning].
          Length = 1480

 Score = 26.6 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 38 IVTLIGPNGSGKS-TIAKLITGII 60
          + TL G NG+GKS T+A  +T +I
Sbjct: 29 VTTLSGGNGAGKSTTMAAFVTALI 52


>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
           [Function unknown].
          Length = 491

 Score = 26.6 bits (58), Expect = 6.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 8   TPLISLSNTSFHKNGYKILQD-INFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
           TPLI   N  F+ N  K+L    +FT+     + ++G  GSGKST+  L+  
Sbjct: 165 TPLIV-DNGIFNDNARKLLHKTTDFTV-----IGVLGGQGSGKSTLLSLLAA 210


>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
          This uncharacterized family contains a P-loop.
          Length = 123

 Score = 26.5 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIK 61
          K  ++V L G  G+GK+T  +   G+ K
Sbjct: 13 KAGDVVLLSGDLGAGKTTFVR---GLAK 37


>gnl|CDD|35951 KOG0732, KOG0732, KOG0732, AAA+-type ATPase containing the
           bromodomain [Posttranslational modification, protein
           turnover, chaperones].
          Length = 1080

 Score = 26.5 bits (58), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 30  NFTIKPNEIVTLIGPNGSGKSTIAK 54
           NF I P   V   GP G+GK+ +A+
Sbjct: 293 NFNITPPRGVLFHGPPGTGKTLMAR 317


>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
           [Intracellular trafficking and secretion].
          Length = 796

 Score = 26.5 bits (58), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 30  NFTIKPNEIVTLI-GPNGSGKSTIAKLI 56
           NF +  +   TLI GP G+GK+ +   +
Sbjct: 429 NFHVGEDVGHTLIIGPTGAGKTVLLSFL 456


>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 490

 Score = 26.3 bits (58), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 41  LIGPNGSGKSTIAKLITGIIKP 62
           L+GP G+GK+ +A  + G++ P
Sbjct: 203 LVGPPGTGKTMLASRLPGLLPP 224


>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
           modification, protein turnover, chaperones].
          Length = 596

 Score = 26.4 bits (58), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 39  VTLIGPNGSGKSTIAKLITGI 59
           V L+GP G+GK+ +AK + G 
Sbjct: 186 VLLVGPPGTGKTLLAKAVAGE 206


>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
           function prediction only].
          Length = 368

 Score = 26.5 bits (58), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 39  VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
           V   GP G+GK+ +AK +    K  +  VK   +LI  +V
Sbjct: 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKA-TELIGEHV 192


>gnl|CDD|133282 cd01882, BMS1, Bms1.  Bms1 is an essential, evolutionarily
          conserved, nucleolar protein.  Its depletion interferes
          with processing of the 35S pre-rRNA at sites A0, A1,
          and A2, and the formation of 40S subunits.  Bms1, the
          putative endonuclease Rc11, and the essential U3 small
          nucleolar RNA form a stable subcomplex that is believed
          to control an early step in the formation of the 40S
          subumit.  The C-terminal domain of Bms1 contains a
          GTPase-activating protein (GAP) that functions
          intramolecularly.  It is believed that Rc11 activates
          Bms1 by acting as a guanine-nucleotide exchange factor
          (GEF) to promote GDP/GTP exchange, and that activated
          (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
          Length = 225

 Score = 26.5 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIK 61
          P  +V ++GP G GK+T   LI  ++K
Sbjct: 38 PPLVVAVVGPPGVGKTT---LIKSLVK 61


>gnl|CDD|30887 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
           trafficking and secretion].
          Length = 451

 Score = 26.2 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 27  QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
            ++N   KP  ++ ++G  GSGK+T   KL
Sbjct: 91  SELNLAKKPPTVILMVGLQGSGKTTTAGKL 120


>gnl|CDD|113093 pfam04310, MukB, MukB N-terminal.  This family represents the
          N-terminal region of MukB, one of a group of bacterial
          proteins essential for the movement of nucleoids from
          mid-cell towards the cell quarters (i.e. chromosome
          partitioning). The structure of the N-terminal domain
          consists of an antiparallel six-stranded beta sheet
          surrounded by one helix on one side and by five helices
          on the other side. It contains an exposed Walker A loop
          in an unexpected helix-loop-helix motif (in other
          proteins, Walker A motifs generally adopt a P loop
          conformation as part of a strand-loop-helix motif
          embedded in a conserved topology of alternating helices
          and (parallel) beta strands).
          Length = 227

 Score = 26.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 36 NEIVTLIGPNGSGKS-TIAKLITGII 60
            + TL G NG+GKS T+A  IT +I
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFITALI 52


>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase
          subunit [Posttranslational modification, protein
          turnover, chaperones].
          Length = 444

 Score = 26.3 bits (58), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
          + P  I+ +IGP G GK+ IA+ +  +       V+      VGYV + V
Sbjct: 48 VTPKNIL-MIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96


>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 375

 Score = 26.4 bits (58), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 25  ILQDINFTIKPNEIVTLIGPNGSGKST 51
           +L+D+   +    +V ++G  GSGKST
Sbjct: 118 VLKDL--ALAKRGLVIIVGATGSGKST 142


>gnl|CDD|34258 COG4639, COG4639, Predicted kinase [General function prediction
          only].
          Length = 168

 Score = 26.1 bits (57), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 38 IVTLIGPNGSGKSTIAK 54
          +V L G +GSGKST AK
Sbjct: 4  LVVLRGASGSGKSTFAK 20


>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase.  Enzyme that
          catalyses the phosphorylation of adenylylsulphate to
          3'-phosphoadenylylsulfate. This domain contains an ATP
          binding P-loop motif.
          Length = 157

 Score = 26.1 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 38 IVTLIGPNGSGKSTIA 53
           V   G +GSGKSTIA
Sbjct: 4  TVWFTGLSGSGKSTIA 19


>gnl|CDD|48379 cd03115, SRP, The signal recognition particle (SRP) mediates the
          transport to or across the plasma membrane in bacteria
          and the endoplasmic reticulum in eukaryotes. SRP
          recognizes N-terminal sighnal sequences of newly
          synthesized polypeptides at the ribosome. The
          SRP-polypeptide complex is then targeted to the
          membrane by an interaction between SRP and its cognated
          receptor (SR). In mammals, SRP consists of six protein
          subunits and a 7SL RNA. One of these subunits is a 54
          kd protein (SRP54), which is a GTP-binding protein that
          interacts with the signal sequence when it emerges from
          the ribosome. SRP54 is a multidomain protein that
          consists of an N-terminal domain, followed by a central
          G (GTPase) domain and a C-terminal M domain..
          Length = 173

 Score = 26.2 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 38 IVTLIGPNGSGKST-IAKL 55
          ++ L+G  G GK+T  AKL
Sbjct: 2  VILLVGLQGVGKTTTAAKL 20


>gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation
          factor-like protein ARL2 [Intracellular trafficking,
          secretion, and vesicular transport, Cytoskeleton].
          Length = 185

 Score = 26.0 bits (57), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 39 VTLIGPNGSGKSTIAKLITGI----IKPTIGS 66
          + ++G + SGK+TI K + G     I PT+G 
Sbjct: 19 ILILGLDNSGKTTIVKKLLGEDTDTISPTLGF 50


>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
           (ATP-binding cassette) transporter nucleotide-binding
           domain; ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds including sugars, ions, peptides, and more
           complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 276

 Score = 26.3 bits (58), Expect = 8.5
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 18/71 (25%)

Query: 125 KDLSGGEFQRALLA-KALL---RKPNLLVLDEPLQGIDFPGELS------LYELITSVRQ 174
           K  SGGE  R +LA KA+L        L+ DE   GI   GE++      L EL      
Sbjct: 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGIS--GEVAQAVGKKLKEL------ 220

Query: 175 STGCGILLISH 185
           S    +L I+H
Sbjct: 221 SRSHQVLCITH 231


>gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit.  The alpha subunit of
          G proteins contains the guanine nucleotide binding
          site. The heterotrimeric GNP-binding proteins are
          signal transducers that communicate signals from many
          hormones, neurotransmitters, chemokines, and autocrine
          and paracrine factors. Extracellular signals are
          received by receptors, which activate the G proteins,
          which in turn route the signals to several distinct
          intracellular signaling pathways. The alpha subunit of
          G proteins is a weak GTPase. In the resting state,
          heterotrimeric G proteins are associated at the
          cytosolic face of the plasma membrane and the alpha
          subunit binds to GDP. Upon activation by a receptor GDP
          is replaced with GTP, and the G-alpha/GTP complex
          dissociates from the beta and gamma subunits. This
          results in activation of downstream signaling pathways,
          such as cAMP synthesis by adenylyl cyclase, which is
          terminated when GTP is hydrolized and the heterotrimers
          reconstitute.
          Length = 317

 Score = 26.3 bits (59), Expect = 8.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 41 LIGPNGSGKSTIAK 54
          L+G   SGKSTI K
Sbjct: 5  LLGAGESGKSTILK 18


>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. 
          Length = 161

 Score = 26.0 bits (58), Expect = 8.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 36 NEIVTLIGPNGSGKSTIAKLITG 58
           +   L G +G GKST+   +  
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLP 57


>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
           related ATPases involved in archaeal flagella
           biosynthesis [Cell motility and secretion /
           Intracellular trafficking and secretion].
          Length = 312

 Score = 26.1 bits (57), Expect = 8.7
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 34/112 (30%)

Query: 41  LIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM 100
           + G   SGK+T+   +   I P                 + VTIE+T  L L        
Sbjct: 148 ICGGTASGKTTLLNALLDFIPP---------------EERIVTIEDTPELKLP------- 185

Query: 101 PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
               ++ +Q++ R    G    +++D         LL  AL ++P+ +++ E
Sbjct: 186 ---HENWVQLVTREGESGSSEVSLED---------LLRAALRQRPDYIIVGE 225


>gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
          involved in the metabolism of nicotinamide adenine
          dinucleotide (NAD+). This enzyme catalyzes the
          phosphorylation of nicotinamide riboside (NR) to form
          nicotinamide mononucleotide (NMN). It defines the NR
          salvage pathway of NAD+ biosynthesis in addition to the
          pathways through nicotinic acid mononucleotide (NaMN).
          This enzyme can also phosphorylate the anticancer drug
          tiazofurin, which is an analog of nicotinamide
          riboside..
          Length = 187

 Score = 26.0 bits (57), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 38 IVTLIGPNGSGKSTIAKLITGII 60
          IV + G   SGK+T+AKL+  I+
Sbjct: 1  IVGISGVTNSGKTTLAKLLQRIL 23


>gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family.  In
          Arabidopsis the region carries two binding domains, a
          phosphoribosylpyrophosphate-binding domain and, at the
          very C-terminus, a uracil-binding domain.
          Length = 196

 Score = 26.2 bits (58), Expect = 9.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 38 IVTLIGPNGSGKSTIAKLITGII 60
          I+ + G +G+GK+T+A+    I 
Sbjct: 1  IIGVAGSSGAGKTTVARTFVSIF 23


>gnl|CDD|147726 pfam05729, NACHT, NACHT domain.  This NTPase domain is found in
          apoptosis proteins as well as those involved in MHC
          transcription activation. This family is closely
          related to pfam00931.
          Length = 165

 Score = 26.1 bits (58), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 39 VTLIGPNGSGKSTIAKLI 56
          V L G  GSGK+T+ + +
Sbjct: 3  VILQGEAGSGKTTLLQKL 20


>gnl|CDD|35471 KOG0250, KOG0250, KOG0250, DNA repair protein RAD18 (SMC family
          protein) [Replication, recombination and repair].
          Length = 1074

 Score = 26.0 bits (57), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query: 41 LIGPNGSGKSTIAKLITGII 60
          ++G NGSGKS I   +T + 
Sbjct: 67 IVGNNGSGKSAI---LTALT 83


>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
          replication, recombination, and repair].
          Length = 515

 Score = 25.8 bits (56), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 43 GPNGSGKSTIAKLI 56
          GP G GK+TIA+++
Sbjct: 45 GPRGVGKTTIARIL 58


>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
           only].
          Length = 301

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 35  PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
             +I  L+G +G GKST+   +   +    G +   
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEK 198


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,772,083
Number of extensions: 142603
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 352
Length of query: 240
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,297,318
Effective search space: 640300382
Effective search space used: 640300382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)