RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (240 letters) >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 233 bits (597), Expect = 3e-62 Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 20/252 (7%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P+I + N + +L+DI+ +++ EI LIGPNG+GKST+ K I G++KP+ G + Sbjct: 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSS-----------RDDVL 108 KR +L +GYVPQK +++ + P+++ + L ++ V Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 + L+RV + +R I +LSGG+ QR LLA+AL + P+LL+LDEP G+D G+ +Y+L Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRAT 228 + +RQ G +L+++H+L +VMA D VICLN + GPP+ + + FG Sbjct: 182 LKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSLA 240 Query: 229 EILAIHNHKHDH 240 LA + H HDH Sbjct: 241 HALAGYRHHHDH 252 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 190 bits (485), Expect = 2e-49 Identities = 73/214 (34%), Positives = 128/214 (59%), Gaps = 18/214 (8%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 + + + G+ +L+D++F +KP E + ++GPNG+GKST+ K I G++KPT GS++ Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 72 QLI------VGYVPQKVTIENTLPLSLMRFMTLSM-----------PSSRDDVLQILDRV 114 + + +GYVPQ+ +I+ P+S+ + + + + + V + L+RV Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 L +R I +LSGG+ QR LLA+AL++ P+LL+LDEP G+D + +YEL+ +R+ Sbjct: 121 GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 Query: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQG 208 G IL+++H+L +V+ D V+ LN + G Sbjct: 181 -EGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 148 bits (374), Expect = 2e-36 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 21/243 (8%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 ++ + N SF G IL D++F+I EI ++GPNGSGKST+ K + G++KP G V Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 Query: 69 RHPQLI-----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD---VL 108 + I + YVPQ +T+ + L + L S++D V Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 + L+ + L +R + +LSGGE QR L+A+AL ++ +L+LDEP +D ++ + EL Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRA 227 + + + G ++++ H+L++ D +I L + +I QG P+ + ++G A Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA 240 Query: 228 TEI 230 I Sbjct: 241 DVI 243 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 145 bits (366), Expect = 2e-35 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 22/234 (9%) Query: 9 PLISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 +I N SF + L+D++ I+ E V LIGPNGSGKST+ KL+ G++KPT G V Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 Query: 68 KRHPQLI------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108 VG V Q T+E+ + L + L + V Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVA 120 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 + L+ V L +R +LSGG+ QR +A L P +L+LDEP G+D G L EL Sbjct: 121 EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 + +++ G I++++H+L +V+ D V+ L++ +I G P I ++AE + Sbjct: 181 LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELLL 234 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 142 bits (358), Expect = 1e-34 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 18/223 (8%) Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------- 68 T + L ++F ++P EI L+GPNG+GK+T+ K++ G++KPT G + Sbjct: 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70 Query: 69 ---RHPQLIVGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119 + +GYVPQ+ T+ L R LS + + + ++L+ L K Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA-RLYGLSKEEAEERIEELLELFGLEDK 129 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 N+ ++ LSGG QR +A ALL P LL+LDEP G+D ++EL+ + + G Sbjct: 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 ILL +H L D VI LN+ +I +G P+ +K+ Sbjct: 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 139 bits (352), Expect = 6e-34 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 32/245 (13%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 TPL+ + S G + D++ ++P EIV LIGPNG+GK+T+ LITG KP+ G+V Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61 Query: 68 KRHPQLIVGYVPQKV-------TIENTLPLSLMRFM----------------------TL 98 + I G P ++ T + T + + Sbjct: 62 IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121 Query: 99 SMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRAL-LAKALLRKPNLLVLDEPLQGI 157 +R+ ++L+ V L +R +LS G+ QR L +A+AL +P LL+LDEP G+ Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQ-QRRLEIARALATQPKLLLLDEPAAGL 180 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + L ELI +R G ILLI H++ +VM D ++ LN + +G P+ +++N Sbjct: 181 NPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 Query: 217 AEYIR 221 I Sbjct: 241 PRVIE 245 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 138 bits (350), Expect = 1e-33 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 L+ + S G ++L+DIN +++ E V ++GP+G GKST+ +LI G+ KPT G V Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 Query: 68 K------RHPQLIVGYVPQKVT-------IEN-TLPLSLMRFMTLSMPSSRDDVLQILDR 113 P +GYV Q+ ++N L L L S +R+ ++L+ Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLEL 117 Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173 V L G ++ LSGG QR +A+AL +P LL+LDEP +D L + + + Sbjct: 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNNR 203 + T +LL++H++ + D V+ L+NR Sbjct: 178 EETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 136 bits (344), Expect = 5e-33 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 19/198 (9%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 + N S G +L D++ +I+ EIV ++GPNG+GKST+ K + G++KP+ G + Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131 + + P++ L R + V Q L+ + L +R +LSGGE Sbjct: 61 KDLASLSPKE----------LARKIAY--------VPQALELLGLAHLADRPFNELSGGE 102 Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191 QR LLA+AL ++P +L+LDEP +D ++ L EL+ + + G ++++ H+L++ Sbjct: 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 Query: 192 ASTDTVICLNN-RICYQG 208 D VI L + RI QG Sbjct: 163 RYADRVILLKDGRIVAQG 180 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 135 bits (341), Expect = 1e-32 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 29/223 (13%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK 81 G L D++F+++P EI LIGPNG+GK+T+ LI+G ++PT GSV + I G P + Sbjct: 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE 71 Query: 82 VT-------------------IEN--------TLPLSLMRFMTLSMPSSRDDVLQILDRV 114 + +EN T L+ +R+ ++L+RV Sbjct: 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 L +R +LS G+ +R +A+AL P LL+LDEP G++ L ELI +R+ Sbjct: 132 GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 G +LL+ H++ +VM+ D V L+ R+ +G P +++N Sbjct: 192 R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 134 bits (338), Expect = 3e-32 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 22/211 (10%) Query: 12 SLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 L N SF L DI+ TIK E V ++GPNGSGKST+ +L+ G++ PT G V Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 Query: 70 HPQLI-----------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111 + + VG V Q T+E + L + L + V + L Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEAL 119 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 + V L G +R+ LSGG+ QR +A L P++L+LDEP G+D G L EL+ Sbjct: 120 ELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN 202 ++ G I++++H+L +++ D VI L + Sbjct: 180 LKAE-GKTIIIVTHDLDLLLELADRVIVLED 209 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 129 bits (325), Expect = 9e-31 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%) Query: 11 ISLSNTSFH----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 + + N S L+DI+ +++ E V L+GP+G GKST+ ++I G+ +PT G Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 67 VKRH------PQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV 114 V P GYV Q+ +T+ + + L L + +R+ ++L+ V Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERAEELLELV 119 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 L G N LSGG QR LA+AL P++L+LDEP +D L E + + + Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179 Query: 175 STGCGILLISHNLHMVMASTDTVICLNNR 203 TG +LL++H++ + D V+ L+ R Sbjct: 180 ETGKTVLLVTHDIDEAVFLADRVVVLSAR 208 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 126 bits (318), Expect = 5e-30 Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 PLISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 ++ N S +G + +L+D++F I + + ++GPNG+GKST+ KL+ G + P G+V Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVNLIGK-YNRNIK 125 K + +GY Q E +++ ++ P + +V L R G+ + + Sbjct: 380 KVGETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG 438 Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 LSGGE R LLAK LL+ PNLL+LDEP +D SL L ++ G +LL+SH Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE---SLEALEEALLDFEGT-VLLVSH 494 Query: 186 NLHMVMASTDTVICLNNRI 204 + + + + + +++ Sbjct: 495 DRYFLDRVATRIWLVEDKV 513 Score = 106 bits (267), Expect = 5e-24 Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 40/236 (16%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +I+L N S +L++++ T+ P E + L+G NG+GKST+ K++ G ++P G V Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 Query: 69 RHPQLIVGYVPQKVTIENTLPL-------------SLMRFMTLSMPSSRDD--------- 106 R L VGY+ Q+ ++ + L + D Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121 Query: 107 VLQILDRVNL------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154 +L+ LD L +R + LSGG +R LA+ALL +P+LL+LDEP Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181 Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQG 208 +D L + + ++++SH+ + + ++ L+ Y+G Sbjct: 182 NHLDLESIEWLEDYLKRYP----GTVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 125 bits (316), Expect = 1e-29 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 22/236 (9%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P++ + N S + L+ ++ ++ EIV L+G NG+GK+T+ K I G+++P G + Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 Query: 68 KRHPQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSR-DDVL 108 + I + YVP+ ++T+E L L ++V Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 ++ R L + N+ LSGGE Q +A+AL+ +P LL+LDEP +G+ ++E Sbjct: 121 ELFPR--LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF 223 I +R+ G ILL+ N + D L N RI G + + + + Sbjct: 179 IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 122 bits (307), Expect = 1e-28 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I L + G +L+ ++ ++ EI+ +IGP+GSGKST+ +LI G+++P G V Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60 Query: 71 PQLI--------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 + I +G + Q +T+ + L LS R+ VL+ Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 L+ V L G + +LSGG +R LA+AL P LL+ DEP G+D + +LI Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA-EYIRLF 223 S+++ G ++++H+L A D + L + +I +G P+ ++ + +R F Sbjct: 181 SLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 121 bits (304), Expect = 2e-28 Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 22/207 (10%) Query: 12 SLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + N SF +K G +IL D++ + EI+ L G NG+GK+T+AK++ G+IK + GS+ + Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60 Query: 71 PQLI--------VGYVPQKV-------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115 + I +GYV Q V ++ L L L + + + +L ++ Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-----LDAGNEQAETVLKDLD 115 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 L R+ LSGG+ QR +A ALL +LL+ DEP G+D+ + ELI + + Sbjct: 116 LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL-AA 174 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202 G +++I+H+ + D V+ L N Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLAN 201 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 119 bits (301), Expect = 6e-28 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 22/225 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + + N + +IL ++ T+ EIV L+G NG+GK+T+ K I G++ P GS++ Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 Query: 71 PQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112 + I +GYVP+ ++T+E L L + + V ++ Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 R L + + LSGGE Q +A+AL+ +P LL+LDEP +G+ ++E I + Sbjct: 121 R--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 R G ILL+ N + D L R+ +G + + Sbjct: 179 RD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 119 bits (300), Expect = 7e-28 Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 24/226 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P + + N S + + DI+ IK E VTL+GP+G GK+T+ ++I G +P+ G + Sbjct: 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62 Query: 68 -------------KRHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108 KR +G V Q +T+E + L L + V Sbjct: 63 LLDGEDITDVPPEKRP----IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 + L+ V L G +R LSGG+ QR LA+AL+ +P +L+LDEPL +D + + Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 + +++ G + ++H+ +A +D + +N+ RI G P+ I Sbjct: 179 LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 118 bits (298), Expect = 1e-27 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 20/226 (8%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I ++N + L DI+ IK E+V L+GP+G+GKST+ ++I G+ P G ++ + Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62 Query: 71 PQLI------------VGYVPQK------VTIENTLPLSL-MRFMTLSMPSSRDDVLQIL 111 +++ VG+V Q +T+ + + L +R S R V ++L Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 V L G +R LSGG+ QR LA+AL +P +L+LDEP +D L + Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + G + ++H+ + D V+ LN RI GPP + D+ Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 117 bits (295), Expect = 3e-27 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---------- 67 + K + D++ + EI L+G NG+GK+T K++TG ++PT G+ Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69 Query: 68 KRHPQLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNR 122 ++ + +GY PQ + + L +RF L +++V +L + L K N+ Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 + LSGG ++ LA AL+ P++L+LDEP G+D ++++LI VR+ G I+L Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIIL 187 Query: 183 ISHNLHMVMA-STDTVICLNNRICYQGPPQTIK 214 +H++ A I + ++ G PQ +K Sbjct: 188 TTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 117 bits (295), Expect = 3e-27 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + L S + L D++ T++P E + L+GP+G GK+T+ +LI G+ +P G + Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60 Query: 71 PQLI---------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115 + + +G V Q +T+ + L + + R V ++L+ V Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL-KLRGVPKAEIRARVRELLELVG 119 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 L G NR +LSGG+ QR LA+AL R+P+LL+LDEPL +D L E + +++ Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202 G + ++H+ +A D + +N Sbjct: 180 LGITTIYVTHDQEEALALADRIAVMNE 206 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 117 bits (294), Expect = 4e-27 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 24/259 (9%) Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 S PLI + + IL ++ + EI+ ++G +GSGKST+ +LI G+++P G Sbjct: 4 SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63 Query: 66 SV----KRHPQLI----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD 105 + + PQL +G + Q+ +T+ + L L R+ Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE 123 Query: 106 DVLQILDRVNLIG-KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 VL L+ V L G + +LSGG +R LA+A+ P LL LDEP G+D Sbjct: 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE-YIR- 221 + ELI + + G +++++H+L ++ D V L + ++ +G P+ + + + ++R Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQ 243 Query: 222 LFGTRATEILAIHNHKHDH 240 F + D+ Sbjct: 244 FFNGIRDGPIPFRYPARDY 262 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 113 bits (285), Expect = 3e-26 Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 25/210 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74 K L D++F+IK E + L+G +GSGKST+A+ I G++KPT GS+ + + Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 Query: 75 -----VGYVPQ--------KVTIENTLPLSLMRFMTLSMPSSRDD-VLQILDRVNLIGKY 120 + V Q ++TI + L LS +R + VL +L V L + Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEV 138 Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 NR +LSGG+ QR +A+AL P LL+ DEP +D + + +L+ +++ G Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198 Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQG 208 +L I+H+L +V D V + +I +G Sbjct: 199 LLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 113 bits (284), Expect = 6e-26 Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 42/202 (20%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68 I + N S L DI+ T++ EI L+GPNG+GK+T+ K+I G++KP G +K Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60 Query: 69 -----RHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 + P+ + +GY+P++ SL +T V + L Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEP--------SLYENLT---------VRENL--------- 94 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 LSGG QR LA+ALL P LL+LDEP G+D +EL+ +++ G I Sbjct: 95 -----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTI 148 Query: 181 LLISHNLHMVMASTDTVICLNN 202 LL SH L D V LNN Sbjct: 149 LLSSHILEEAERLCDRVAILNN 170 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 112 bits (283), Expect = 6e-26 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 28/225 (12%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74 + NG K L+D++ +I P E V LIGP+G+GKST+ + + G+++PT GSV I Sbjct: 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69 Query: 75 ----------VGY-------VPQKVTIENTLPLSLMRFMTLSM------PSSRDDVLQIL 111 +G + + +EN L L R T + L L Sbjct: 70 GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 +RV L+ K + LSGG+ QR +A+AL+++P L++ DEP+ +D + +L+ Sbjct: 130 ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 + + G +++ H + + D ++ L + RI + GPP + D Sbjct: 190 INREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 112 bits (282), Expect = 8e-26 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 35/240 (14%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 I N SF + +L+D++ I P E V ++G +GSGKST+ KL+ G+ KP G + Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 Query: 69 -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + VGYV Q + + S+ + L P + D+ +I++ L Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG---SIRENIALGNPEATDE--EIIEAAQLA 586 Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 G Y+ + + LSGG+ QR LA+ALL KP +L+LDE +D E Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI-KDNAEYIRL 222 + + + + Q G +++I+H L + ++ ++ +I QG + + Y RL Sbjct: 647 IILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARL 704 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 112 bits (282), Expect = 9e-26 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83 K + ++F+IK E + L+G +G GKST+ +LI G+ +PT G + + I Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK------- 79 Query: 84 IENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALL 142 LS R+ VL++L++V L + R +LSGG+ QR +A+AL Sbjct: 80 --------------LSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 Query: 143 RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 P L+V DEP+ +D + + L+ +++ G L ISH+L +V +D + + Sbjct: 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 Query: 203 -RICYQGPPQTIKDN 216 +I GP + + N Sbjct: 186 GKIVEIGPTEEVFSN 200 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 112 bits (281), Expect = 1e-25 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 27/227 (11%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------------- 67 K + D++F ++ E + L+G +GSGKST+A+++ G++ P+ GS+ Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363 Query: 68 --KRHPQLIV-----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 +R Q++ P ++T+ + L L S R V ++L+ V L ++ Sbjct: 364 RLRRRIQMVFQDPYSSLNP-RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422 Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 +R +LSGG+ QR +A+AL +P LL+LDEP+ +D + + L+ +++ G Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482 Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223 L ISH+L +V D V + + RI +GP + + +N Y R Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 Score = 112 bits (281), Expect = 1e-25 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 40/246 (16%) Query: 8 TPLISLSNTSFHKNGYK----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 +PL+ + N + ++D++F ++P EI+ ++G +GSGKST+A + G++ Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 Query: 64 I----GSVKRHPQLI---------------VGYVPQK--------VTIENTLPLSLMRFM 96 G V + + + + Q +TI + + +L Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122 Query: 97 TLSMPSSRDDVLQILDRVNL-----IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLD 151 S +R +++L++V L +Y LSGG QR ++A AL KP LL+ D Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPH---QLSGGMRQRVMIAMALALKPKLLIAD 179 Query: 152 EPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210 EP +D + + +L+ +++ G +L I+H+L +V D V+ + I GP Sbjct: 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 Query: 211 QTIKDN 216 + I N Sbjct: 240 EEILSN 245 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 111 bits (280), Expect = 1e-25 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 9 PLISLSNTSFHKNG-YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P+I + N SF + I + +NF I + V L+GPNG+GKST+ KLITG ++PTIG V Sbjct: 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKY-NRNI 124 RH + Q + + L S + FM +++ IL R L G + Sbjct: 448 SRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM 507 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 LS G+ +R L A+ +++P+LL+LDEP +D +L E I + G G++L+S Sbjct: 508 SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN---EFPG-GVVLVS 563 Query: 185 HNLHMV-MASTDTVICLNNRI 204 H+ ++ + + +C N + Sbjct: 564 HDFRLISQVAEEIWVCENGTV 584 Score = 74.2 bits (182), Expect = 3e-14 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 43/242 (17%) Query: 4 ALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 + I+ + + + S +G ++++D+ + LIGPNGSGKST + I G P Sbjct: 69 SHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128 Query: 64 IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---------PSSRDDVLQI---- 110 + + L P + + + +M + DD + Sbjct: 129 PEHIDFYL-LSREIEP---SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDE 184 Query: 111 ----LDRVN-----------LIGKYN------RNIKDLSGGEFQRALLAKALLRKPNLLV 149 LD ++ L G + +KDLSGG RA LA+AL +KP+LL+ Sbjct: 185 LYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244 Query: 150 LDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQ 207 LDEP +D + L E + + ++++SH+ + +I L+N+ I Y+ Sbjct: 245 LDEPTNHLDLEAIVWLEEYLAKYDRII---LVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 Query: 208 GP 209 G Sbjct: 302 GN 303 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 111 bits (280), Expect = 1e-25 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 30/202 (14%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------------R 69 IL+ I+F ++ E + +IGP+GSGKST+A+L+ GI PT GSV+ R Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 Query: 70 HPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK----YNRNI 124 H +GY+PQ V + + T+ ++ RF + P + ++ LI + Y+ I Sbjct: 411 H----IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466 Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 + LSGG+ QR LA+AL P L+VLDEP +D GE +L I + + G + Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTV 525 Query: 181 LLISHNLHMVMASTDTVICLNN 202 ++I+H +AS D ++ L + Sbjct: 526 VVIAHRPS-ALASVDKILVLQD 546 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 111 bits (278), Expect = 2e-25 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 30/251 (11%) Query: 8 TPLISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 +I + N S + G++ L+D+N I E+V +IGP+G+GKST+ + + G++ PT G Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60 Query: 67 V--------------KRHPQLIVGY-------VPQKVTIENTLPLSLMR----FMTLSMP 101 + R + +G VP+ +EN L L + Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120 Query: 102 SSRD--DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 S D L L+RV ++ K + LSGG+ QR +A+AL+++P +++ DEP+ +D Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE 218 + +++ + Q G +++ H + + D +I L RI + GP + D Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD-EA 239 Query: 219 YIRLFGTRATE 229 ++G +E Sbjct: 240 LDEIYGNEISE 250 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 110 bits (276), Expect = 4e-25 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 30/235 (12%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ISL N SF + +G L D+N TIK ++ L+G +G+GKST+ L+ G + PT G ++ Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLI 117 + + + +V Q + ++ + L+ P S ++++ LD+ L+ Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLL 437 Query: 118 ------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 + I + LSGG+ QR LA+ALL +LL+LDEP +D E + + Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 + + + +L+I+H L A D ++ L+N R+ QG + + + Sbjct: 498 ALQELAKQK--TVLVITHRLE-DAADADRIVVLDNGRLVEQGTHEELSEKQGLYA 549 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 110 bits (276), Expect = 4e-25 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 27/234 (11%) Query: 8 TPLISLSNTSF----HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 L+S+ N S K + L +++ I+ E + ++G +GSGKST+A+L+ G+ KP+ Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60 Query: 64 IGSVKRHPQLI------------VGYVPQKVTIENTL-PLSLMR------FMTLSMPSSR 104 GS+ + + V V Q ++L P + + S+ Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQD--PYSSLNPRRTVGRILSEPLRPHGLSKSQ 118 Query: 105 DDVLQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 + ++LD+V L + +R +LSGG+ QR +A+AL+ +P LL+LDEP +D + Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216 + L+ +++ G L ISH+L +V D + + N +I GP + + + Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 110 bits (276), Expect = 5e-25 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + L N S +L D++ I+ EIV L+GP+GSGKST+ + I G+ +P GS+ Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60 Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130 + + + + + + F + +++ LSGG Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------------GLSGG 104 Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 + QR LA+AL P++L+LDEP +D + L+ S++ G ++L++H+L Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 Query: 191 MASTDTVICLNN 202 D V+ L + Sbjct: 165 ARLADRVVVLRD 176 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 108 bits (271), Expect = 1e-24 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67 + L N +++L+D+N I+ E V L+GP+G GKST+ ++I G+ +PT G + Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63 Query: 68 ----------KRHPQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111 KR + V Q +T+ + L + + V ++ Sbjct: 64 GRDVTDLPPEKRG----IAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 + L NR LSGG+ QR LA+AL+RKP + +LDEPL +D + + I Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + + G + ++H+ M D ++ +N+ RI G P + + Sbjct: 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 108 bits (271), Expect = 1e-24 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 + N SF G L +++ T+K EIV L+GPNGSGKST+ + I G++KPT G + Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131 + ++ + ++ R+ + + LSGG+ Sbjct: 61 K----------------------------DIAKLPLEELRRRIGYVPQ-------LSGGQ 85 Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191 QR LA+ALL P+LL+LDEP G+D L EL+ + + G +++++H+ + Sbjct: 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAE 144 Query: 192 ASTDTVICLNN 202 + D VI L + Sbjct: 145 LAADRVIVLKD 155 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 108 bits (271), Expect = 1e-24 Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 21/217 (9%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------K 68 K++ ++ ++K EIV L+GPNG+GK+T +I G++KP G + Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70 Query: 69 RHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 + +L +GY+PQ K+T+E + L+++ LS + + ++L+ ++ Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLEELLEEFHITHLRKS 129 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 LSGGE +R +A+AL P L+LDEP G+D + ++I ++ G G+L+ Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLI 188 Query: 183 ISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAE 218 HN+ ++ TD I ++ +G P+ I N Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 108 bits (271), Expect = 2e-24 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 30/234 (12%) Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76 S+ L+D++ TI E+V ++GP+G GK+T+ LI G + P+ GS++ + + I G Sbjct: 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71 Query: 77 -------------YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 +P I+N L + + R+ Q+L V L G ++ Sbjct: 72 PGAERGVVFQNEALLPWLNVIDNV-AFGL-QLRGIEKAQRREIAHQMLALVGLEGAEHKY 129 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 I LSGG QR +A+AL +P LL+LDEP +D + EL+ + Q TG +LLI Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 Query: 184 SHNLHMVMASTDTVICL---------------NNRICYQGPPQTIKDNAEYIRL 222 +H++ + ++ L R P + IK + E+I + Sbjct: 190 THDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEPSRAIKSDPEFIAM 243 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 107 bits (270), Expect = 2e-24 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 17/222 (7%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I L N S G+ L ++ IK E TL+GP+G GK+T+ +LI G PT G + Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60 Query: 71 PQLIVGYVPQK---------------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115 + I P K +T+ + L R L ++ V + LD V Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEALDLVQ 119 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 L G NR LSGG+ QR +A+AL+ +P +L+LDEPL +D + + +++ Sbjct: 120 LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 G + ++H+ + +D + +N +I G P+ I + Sbjct: 180 LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 107 bits (270), Expect = 2e-24 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 53/207 (25%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 I N SF +L+D++ TIKP E V ++GP+GSGKST+ KL+ + PT G + Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 Query: 69 RHPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + + YVPQ + Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL--------------------------------- 87 Query: 118 GKYNRNIKD--LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 ++ I++ LSGG+ QR +A+ALLR P +L+LDE +D E + E + ++ + Sbjct: 88 --FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK- 144 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202 G +++I+H L + + D +I L++ Sbjct: 145 -GKTVIVIAHRLSTIRDA-DRIIVLDD 169 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 107 bits (269), Expect = 2e-24 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 21/227 (9%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 +I N S K + D+N TI+ E + LIGP+GSGK+T K+I +I+PT G + Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112 + I +GYV Q++ T+ + + + + ++LD Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-KLLGWDKERIKKRADELLD 119 Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 V L +Y +R +LSGG+ QR +A+AL P +L++DEP +D L E I Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 +++ G I+ ++H++ + D + ++ I P I N Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 107 bits (269), Expect = 3e-24 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 27/205 (13%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP------ 79 L+ I+FTI+ EIV IGPNG+GK+T K+++G+++PT G V+ + G VP Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR-----VAGLVPWKRRKK 91 Query: 80 ----------QKVTIENTLP----LSLMRFM-TLSMPSSRDDVLQILDRVNLIGKYNRNI 124 QK + LP L+ + L + + ++ + ++L + + Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 + LS G+ RA +A ALL +P +L LDEP G+D + ++ + + G +LL S Sbjct: 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208 H + + A V+ ++ R+ Y G Sbjct: 212 HYMKDIEALARRVLVIDKGRLLYDG 236 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 107 bits (269), Expect = 3e-24 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 26/226 (11%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63 PLI L N S +NG KIL D+++ + P E ++GPNG+GK+T+ L+TG P+ Sbjct: 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89 Query: 64 -----IGSVKRHPQL--IVGYVPQKVTI-----ENTLPL-------SLMRFMTLSMPSSR 104 G + +L +G V ++ E + S+ + Sbjct: 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 +L+ + +R LS GE +R L+A+AL++ P LL+LDEP QG+D Sbjct: 150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209 Query: 165 LYELITSVRQS-TGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208 L + + S +L ++H+ + + L + QG Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 106 bits (267), Expect = 4e-24 Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 25/245 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 PL+ L S G K L ++ T++P E+ L+G NG+GKST+ K+++G+ P G + Sbjct: 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65 Query: 68 KRHPQLIVGYVPQK------VTIENTLPLS---------------LMRFMTLSMPSSRDD 106 + + P+ T+ L L RF + + R Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125 Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS-L 165 ++L R+ L + + DLS + Q +A+AL +L+LDEP + E L Sbjct: 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT-VKETERL 184 Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224 ++LI ++ G I+ ISH L V D + L + R+ P E +RL Sbjct: 185 FDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMV 243 Query: 225 TRATE 229 R E Sbjct: 244 GRELE 248 Score = 82.5 bits (204), Expect = 1e-16 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 27/203 (13%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQ----L 73 ++D++FT++ EI+ + G G+G++ +A+ + G + G + R P+ Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 Query: 74 IVGYVP----------QKVTIENTLPLSLMRFMT---LSMPSSRDDVLQILDRVNL-IGK 119 + YVP EN SL RF + R + + R+ + Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 + I LSGG Q+ +LA+ L P +L+LDEP +GID + +Y LI + G Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKA 453 Query: 180 ILLISHNLHMVMASTDTVICLNN 202 IL+IS L ++ +D ++ + Sbjct: 454 ILMISSELPELLGLSDRILVMRE 476 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 105 bits (264), Expect = 9e-24 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 48/205 (23%) Query: 11 ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 + + N SF G + +L++++F+I+P E + +IGP+GSGKST+A+LI G+++PT G V+ Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 69 -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 VGY+PQ DD L Sbjct: 61 LDGADISQWDPNELGDHVGYLPQ------------------------DDEL-------FS 89 Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 G NI LSGG+ QR LA+AL P +LVLDEP +D GE +L + I +++ + G Sbjct: 90 GSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAG 146 Query: 178 CGILLISHNLHMVMASTDTVICLNN 202 ++I+H +AS D ++ L + Sbjct: 147 ATRIVIAHRPE-TLASADRILVLED 170 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 105 bits (264), Expect = 1e-23 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 24/202 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------KRHPQLIV 75 ++L DI+ +K EI +GPNG+GK+T K+I G+IKP G + K L Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR 73 Query: 76 --------GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127 G+ P EN +R + + + + ++LD V L + +K Sbjct: 74 IGALIEAPGFYPNLTAREN------LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF 127 Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 S G QR +A ALL P+LL+LDEP G+D G L ELI S+R G +L+ SH L Sbjct: 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL 186 Query: 188 HMVMASTDTVICLNN-RICYQG 208 + D + +N ++ +G Sbjct: 187 SEIQKVADRIGIINKGKLIEEG 208 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 105 bits (264), Expect = 1e-23 Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 21/215 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG----- 65 + L N + + L ++ T+ + L+GPNG+GK+T+ +++ + P+ G Sbjct: 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 Query: 66 --SVKRHPQLI---VGYVPQKVTIENTLP-LSLMRFMTL--SMPSSRDD--VLQILDRVN 115 V + PQ + +GY+PQ+ + + ++ +PS V ++L+ VN Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE-LSLYELITSVRQ 174 L + + I LSGG +R +A+AL+ P++L++DEP G+D P E + L+ Sbjct: 120 LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEERIRFRNLL--SEL 176 Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208 ++L +H + V + + V LN ++ ++G Sbjct: 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 105 bits (264), Expect = 1e-23 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74 + L+ ++ +I+ E V ++GP+GSGKST+ ++ G+ +PT G V+ I Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73 Query: 75 ----------VGYVPQKVTIENTLP-----LSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119 +G+V Q + L + + R+ ++L+RV L + Sbjct: 74 KELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 N +LSGG+ QR +A+AL P +++ DEP +D + EL+ + + G Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193 Query: 180 ILLISHN 186 I++++H+ Sbjct: 194 IVVVTHD 200 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 104 bits (262), Expect = 2e-23 Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 50/193 (25%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I L N S G +L+DI+ TI P + + L+G NG+GKST+ KLI G ++P G V Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60 Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130 + +GY Q LSGG Sbjct: 61 STVKIGYFEQ----------------------------------------------LSGG 74 Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 E R LAK LL PNLL+LDEP +D +L E + + ++L+SH+ + + Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSHDRYFL 130 Query: 191 MASTDTVICLNNR 203 +I L + Sbjct: 131 DQVATKIIELEDG 143 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 103 bits (259), Expect = 4e-23 Identities = 58/237 (24%), Positives = 117/237 (49%), Gaps = 23/237 (9%) Query: 9 PLISLSNTSFHK--NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 + +L + K K++ D++ + EIV L+GPNG+GK+T +I G+++P G Sbjct: 1 DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60 Query: 67 V------------KRHPQLIVGYVPQKVTI-------ENTLPLSLMRFMTLSMPSSRDDV 107 + + +L +GY+PQ+ +I +N + + +R L ++++ Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 +L+ ++ + LSGGE +R +A+AL P ++LDEP G+D + + Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAEYIRLF 223 +I ++ G G+L+ HN+ + D I + ++ +G P+ I +N + R++ Sbjct: 181 IIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 103 bits (259), Expect = 4e-23 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 15/193 (7%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLI-----V 75 L DI+F+++ EI L+GPNG+GK+T ++I GII P G V P I + Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72 Query: 76 GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129 GY+P K+ + + L + L + L +R + + L+R+ L N+ +++LS Sbjct: 73 GYLPEERGLYPKMKVIDQL-VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131 Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189 G Q+ A++ P LL+LDEP G+D L ++I + ++ G ++L +H + + Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMEL 190 Query: 190 VMASTDTVICLNN 202 V D V+ LN Sbjct: 191 VEELCDRVLLLNK 203 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 103 bits (258), Expect = 4e-23 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 32/239 (13%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I N +F + G +L+D++FTI + V ++GP+GSGKSTI +L+ + GS+ Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL------QILD 112 Q I +G VPQ + N +R+ ++ ++V+ QI D Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHD 118 Query: 113 RV-NLIGKYN-----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 ++ Y+ R +K LSGGE QR +A+A+L+ P +L+LDE +D E + Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP-QTIKDNAEYIRLF 223 + V S G ++I+H L ++ + D +I L + RI +G + + Y ++ Sbjct: 178 AALRDV--SKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 103 bits (258), Expect = 5e-23 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 27/204 (13%) Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67 +I N S + G + L+D++F I E V L GP+G+GKST+ KLI G +PT G + Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 Query: 68 -----------KRHPQL--IVGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDD 106 + P L +G V P + EN LP +R + R Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP---LRVIGKPPREIRRR 117 Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 V ++LD V L K LSGGE QR +A+A++ +P +L+ DEP +D + Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 Query: 167 ELITSVRQSTGCGILLISHNLHMV 190 L + + G +L+ +H+L +V Sbjct: 178 RLFEEINR-LGTTVLMATHDLELV 200 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 103 bits (257), Expect = 6e-23 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 18/230 (7%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIV 75 K + +I+F + P EI L+GPNG+GK+T ++I G+++PT G + + + + Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI 74 Query: 76 GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129 GY+P K+T+E+ L L + + + L+R+ ++GK + IK+LS Sbjct: 75 GYLPEERGLYPKMTVEDQL-KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSK 133 Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189 G Q+ A++ +P LL+LDEP G+D L + I +++ G I+ SH + Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEH 192 Query: 190 VMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF--GTRATEILAIHNH 236 V D ++ L + G + I+ + RL + E LA Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPG 242 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 102 bits (256), Expect = 7e-23 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 30/246 (12%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 +I N S+ G ++L ++ ++P E++ ++GPNG+GKST+ K ++G + P G V Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60 Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVL-QIL 111 + + +PQ T++ + + + + P + + Q L Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLR------KPNLLVLDEPLQGIDFPGELSL 165 +L G R+ + LSGGE QR LA+ L + L LDEP +D + Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180 Query: 166 YELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222 L RQ G +L + H+L++ D ++ L+ R+ G PQ + + R+ Sbjct: 181 LRL---ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237 Query: 223 FGTRAT 228 +G Sbjct: 238 YGADIR 243 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 102 bits (255), Expect = 1e-22 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 31/217 (14%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63 P + + + G D++ ++K EI L+G NG+GKST+ K++ G+ +P Sbjct: 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62 Query: 64 ------------------IGSVKRHPQLIVGYVPQKVTIEN-TLPLSLMRFMTLSMPSSR 104 IG V +H L VP EN L L + + +R Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQHFML----VPTLTVAENIILGLEPSKGGLIDRRQAR 118 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL- 163 + ++ +R L + + DLS GE QR + KAL R LL+LDEP + P E Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEAD 177 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 L+E++ + G I+ I+H L VMA D V L Sbjct: 178 ELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVL 213 Score = 82.5 bits (204), Expect = 1e-16 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 31/218 (14%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------KRHPQ 72 ++D++F ++ EIV + G G+G+S + + I+G+ KP G + + + Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 Query: 73 LIVGYVPQ-KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI------- 124 L + YVP+ + L LSL + L + I K+ R + Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393 Query: 125 --------KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 + LSGG Q+ +LA+ L R+P+LL+ +P +G+D ++E + +R + Sbjct: 394 APSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA- 452 Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 G +LLIS +L ++ +D + + RI PP+ Sbjct: 453 GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 101 bits (253), Expect = 2e-22 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 35/234 (14%) Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76 + + +QDI+F I EIV +G NG+GKST K++TG++ PT G V+ + G Sbjct: 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR-----VNG 85 Query: 77 YVP----------------QKVTIENTLP----LSLMRFMTLSMPSSR-----DDVLQIL 111 P QK+ + LP L +++ + +P D + +IL Sbjct: 86 KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-EIPDDEFAERLDFLTEIL 144 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 D L G ++ LS G+ RA LA ALL P +L LDEP G+D + ++ E + Sbjct: 145 D---LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224 + +LL +H + D V+ ++ ++ + G +++ + F Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 101 bits (253), Expect = 2e-22 Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 22/234 (9%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +I + N S ++L+ I+ +++ E+V +IGP+GSGKST+ + + G+ +P GS+ Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 Query: 69 RHPQLI------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 + + VG V P +EN + L+ ++ LS +R+ L+ Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN-VTLAPVKVKKLSKAEAREKALE 119 Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 +L++V L K + LSGG+ QR +A+AL P +++ DEP +D + +++ Sbjct: 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222 + + G +++++H + D VI ++ +I +GPP+ DN + R Sbjct: 180 KDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 101 bits (253), Expect = 2e-22 Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 16/210 (7%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-------SVKRHPQL 73 ++ ++ ++F ++ EI L+GPNG+GK+T K++T ++KPT G V R P+ Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70 Query: 74 I---VGYVPQKVTIENTLP----LSLM-RFMTLSMPSSRDDVLQILDRVNLIGKYNRNIK 125 + +G V Q +++++ L L + R + R+ + ++LD V L+ +R +K Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130 Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 SGG +R +A++L+ +P +L LDEP G+D ++E I +++ G ILL +H Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 Query: 186 NLHMVMASTDTVICLNN-RICYQGPPQTIK 214 + D V +++ RI +G P+ +K Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 100 bits (250), Expect = 4e-22 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 28/207 (13%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74 + L+D+N I+ E V ++GP+GSGKST+ L+ G+ KPT G V + + + Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE 74 Query: 75 ----------VGYVPQK-------VTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 +G+V Q +EN LPL + S + ++L+ + L Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGL 131 Query: 117 IGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 + + +LSGG+ QR +A+AL+ P +++ DEP +D + EL+ + + Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202 G I++++H+ + D VI L + Sbjct: 192 RGKTIIMVTHDPELA-KYADRVIELKD 217 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 99.9 bits (249), Expect = 6e-22 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 38/227 (16%) Query: 11 ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67 I N SF +I L +++ TI+ E V +IG GSGKST+ KL+ G+ KPT GSV Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 Query: 68 -------KRHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + P + +GYVPQ VT+ +L +TL P + D+ +IL L Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYG---TLRDNITLGAPLADDE--RILRAAELA 117 Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 G + I + LSGG+ Q LA+ALL P +L+LDEP +D E Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 Query: 164 SLYE-LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208 L E L + T +++I+H + + D +I +++ RI G Sbjct: 178 RLKERLRQLLGDKT---LIIITHRPSL-LDLVDRIIVMDSGRIVADG 220 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 97.9 bits (244), Expect = 2e-21 Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 34/232 (14%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-----PTIG 65 I L + + + L+DI+ I EI LIGP+G GKST+ +L+ + P G Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60 Query: 66 SVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMTL--------SMPSSR 104 V + I VG V QK N P S+ + Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQK---PNPFPGSIYDNVAYGLRLHGIKLKEELD 117 Query: 105 DDVLQILDRVNLIGKYNRNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 + V + L + L + + LSGG+ QR LA+AL +P +L+LDEP +D Sbjct: 118 ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177 Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVM-ASTDTVICLNNRICYQGPPQTI 213 + ELI +++ I++++HN+ + T LN R+ GP + I Sbjct: 178 AKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 98.0 bits (244), Expect = 2e-21 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 19/225 (8%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67 I + N S + L D++ I E+V L+GP+GSGK+T+ +LI G+ +P G++ Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62 Query: 68 -----KRHPQ-LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSS---RDDVLQILD 112 Q VG+V Q +T+ + + L P R V ++L Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 V L +R LSGG+ QR LA+AL +P +L+LDEP +D L + + Sbjct: 123 LVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + ++H+ + D V+ +N RI G P + D+ Sbjct: 183 HDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 97.4 bits (242), Expect = 3e-21 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 30/238 (12%) Query: 11 ISLSNTSFH-KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I N SF +L+DI+F+I+P E V ++GP+GSGKST+ KL+ + PT G + Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRV--- 114 I +G V Q + + ++ + L P + +++ + L Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG---TIRENIALGRPDATDEEIEEALKLANAH 445 Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 NL Y+ + +LSGG+ QR +A+ALLR P +L+LDE +D E + Sbjct: 446 EFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRLF 223 + + + + G L+I+H L + + ++ N RI +G + + Y RL+ Sbjct: 506 DALKKLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 97.2 bits (242), Expect = 4e-21 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%) Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS 91 I E++ ++GPNG GK+T KL+ G+IKP GS L V Y PQ I + Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQY--ISPDYDGT 417 Query: 92 LMRFMTLSMPSSRDD---VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148 + + ++ S+ +I+ +NL R + +LSGGE QR +A AL R+ +L Sbjct: 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477 Query: 149 VLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 +LDEP +D + + ++I ++ L++ H+++M+ +D +I Sbjct: 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527 Score = 79.5 bits (196), Expect = 7e-16 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 30/222 (13%) Query: 3 NALSITPL-ISLSNTSFHK---NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58 +A+SI L L H+ NG+K+ + T +P ++V ++GPNG GKST K++ G Sbjct: 65 DAISIVNLPEELEEEVVHRYGVNGFKLYRLP--TPRPGKVVGILGPNGIGKSTALKILAG 122 Query: 59 IIKPTIGSVKRHP--QLIVGY-------------------VPQKVTIENTLPLSLMRFMT 97 +KP +G + P ++ K + +P + + Sbjct: 123 ELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG 182 Query: 98 --LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155 L R ++++R+ L +R++ +LSGGE QR +A ALLR ++ DEP Sbjct: 183 ELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTV 197 +D L+ +I + + G ++++ H+L ++ +D V Sbjct: 243 YLDIRQRLNAARVIRELAE-DGKYVIVVEHDLAVLDYLSDFV 283 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 96.9 bits (241), Expect = 4e-21 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 17/200 (8%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81 + T+ EIV ++GP+G+GKST+ LI G P G + + P + Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 Query: 82 ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132 +T+ + L L + L+ R+ V +V L G R +LSGG+ Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135 Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192 QR LA+ L+R+ +L+LDEP +D + L++ + +L+++H+ Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195 Query: 193 STDTVICLNN-RICYQGPPQ 211 D V+ L+N RI QG Q Sbjct: 196 IADRVVFLDNGRIAAQGSTQ 215 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 96.4 bits (240), Expect = 6e-21 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 17/204 (8%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------VG 76 L++++ ++ + ++GP GSGKS + + I G IKP G + + + I + Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74 Query: 77 YVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130 YVPQ +T+ + ++ + VL+I + + + NR + LSGG Sbjct: 75 YVPQNYALFPHMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGG 133 Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 E QR +A+AL+ P +L+LDEP +D + L E + +R+ G +L ++H+ Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193 Query: 191 MASTDTV-ICLNNRICYQGPPQTI 213 A D V I LN ++ G P+ + Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEV 217 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 96.5 bits (240), Expect = 6e-21 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 34/239 (14%) Query: 10 LISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 + L N SF G K L++ N T+ E V ++G +GSGKST+ +L+ G P GS+ Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVN 115 + + + + Q+V + + +L + L+ P + D ++ L +V Sbjct: 396 TLNGVEIASLDEQALRETISVLTQRVHLFSG---TLRDNLRLANPDASDEELWAALQQVG 452 Query: 116 LIGKYNRNIKD------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 L K + D LSGGE +R LA+ALL L +LDEP +G+D E Sbjct: 453 L-EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 + L+ + G +L+++H L + D +I L+N +I +G + N + Sbjct: 512 QVLALLFEHAE--GKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 95.3 bits (237), Expect = 1e-20 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 35/237 (14%) Query: 15 NTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----- 67 + SF + K + ++F +K EI+ ++G +GSGKS +AK I G++ + Sbjct: 8 SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67 Query: 68 ------------KRHPQLI---VGYVPQK--------VTIENTLPLSLMR-FMTLSMPSS 103 K ++ + + Q +TI + + L LS + Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127 Query: 104 RDDVLQILDRVNLIG---KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160 ++ +++L+ V + + +LSGG QR ++A AL P LL+ DEP +D Sbjct: 128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187 Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + + +L+ +++ G ++LI+H+L +V D V + RI +GP + I N Sbjct: 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 94.8 bits (236), Expect = 2e-20 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 26/214 (12%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------- 68 L+D++ ++ EI +IG +G+GKST+ + I G+ +PT GSV Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS 73 Query: 69 ----RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 R + +G + Q + EN LPL + + + VL++L+ V L Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGL 130 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 K + LSGG+ QR +A+AL P +L+ DE +D S+ L+ + + Sbjct: 131 EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209 G I+LI+H + +V D V + + +G Sbjct: 191 GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 93.7 bits (233), Expect = 4e-20 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 31/226 (13%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I N +F + +L+DINF+IKP E V ++GP G+GK+T+ L+ P G + Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---- 114 I +G V Q + ++M + L P++ D+ + + Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFL---FSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119 Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 L Y+ + +LS GE Q +A+A+LR P +L+LDE ID E + Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211 E + + + ++I+H L + + D ++ L++ +I +G Sbjct: 180 EALEKLMKGRTS--IIIAHRLSTIKNA-DKILVLDDGKIIEEGTHD 222 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 93.4 bits (232), Expect = 4e-20 Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 31/228 (13%) Query: 10 LISLSNTSFHKNGYK-----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 +I L N S L D++ I EI +IG +G+GKST+ +LI + +PT Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60 Query: 65 GSVK--------------RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPS 102 GSV R + +G + Q + EN PL L + Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAE 117 Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 + V ++L+ V L K +R LSGG+ QR +A+AL P +L+ DE +D Sbjct: 118 IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209 S+ EL+ + + G I+LI+H + +V D V L+ R+ +G Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 93.6 bits (232), Expect = 5e-20 Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 19/209 (9%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------KRHP 71 ++ ++F + P E L+G NG+GK+T K++TG KPT G + Sbjct: 579 GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 Query: 72 QLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNRNIKD 126 + +GY PQ + L + F L + ++L V L N+ ++ Sbjct: 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRT 698 Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 SGG +R A AL+ P++++LDEP G+D L+++I +R++ I+L SH+ Sbjct: 699 YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHS 757 Query: 187 LHMVMA-STDTVICLNNRICYQGPPQTIK 214 + A T T I + ++ G PQ +K Sbjct: 758 MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 92.2 bits (229), Expect = 1e-19 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 19/223 (8%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 +I++ N S +L D++ I I ++IGPNG+GKST+ +++ ++K G + Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60 Query: 70 HPQLIVGY----VPQKVTI---ENTLPLSLM--------RF-MTLSMPSSRDDVL--QIL 111 + + +K++I EN + L RF + + D + + + Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 + ++L +R + +LSGG+ QRA +A L + + ++LDEPL +D + + +++ Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 + G I+++ H+++ +D ++ L N ++ QG P I Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 92.3 bits (229), Expect = 1e-19 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 31/245 (12%) Query: 5 LSITPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61 + +I + SF + +L++++FTI+P E+V L+GP+GSGKSTIA L+ Sbjct: 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519 Query: 62 PTIGSVK-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 PT G + ++ + +G V Q+ + + + + + ++ +++ Sbjct: 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN--ATDEEIEAA 577 Query: 111 LDRVN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 N YN + + LSGG+ QR +A+ALLR P +L+LDE +D Sbjct: 578 AKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI--KDNA 217 E + E + + Q G +L+I+H L V + V+ R+ G + K N Sbjct: 638 ESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695 Query: 218 EYIRL 222 Y +L Sbjct: 696 LYAKL 700 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 91.5 bits (227), Expect = 2e-19 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 17/205 (8%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------KR 69 K + + ++FT+KP E+ L+GPNG+GK+T +++ G+++P G Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA 74 Query: 70 HPQLIVGYVPQKVTIENTLPLSLM-----RFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124 + +G+V + + L L + ++ DR+ + +R + Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV 134 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 S G Q+ +A+AL+ P +L+LDEP G+D +L E I +R + G IL + Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFST 193 Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208 H + V D V+ L+ R+ Y+G Sbjct: 194 HIMQEVERLCDRVVVLHRGRVVYEG 218 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 91.3 bits (226), Expect = 2e-19 Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 14/188 (7%) Query: 9 PLISLSNTSFHKNGYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P++ L + +F G K L + ++F I + + ++GPNG GKST+ KL+ G + P G + Sbjct: 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644 Query: 68 KRHPQLIVGYVPQ----KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNR 122 +++ +L +G+ Q + E T L R L +R + L L + Sbjct: 645 RKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEAR----KQLGTFGLASHAHTI 700 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 IKDLSGG+ R LA+ L P++L+LDEP +D S+ L ++ + G G+++ Sbjct: 701 KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE---SIDALAEAINEYNG-GVIM 756 Query: 183 ISHNLHMV 190 +SH+ ++ Sbjct: 757 VSHDERLI 764 Score = 47.4 bits (112), Expect = 4e-06 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 36/225 (16%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG---IIKPTIGSV 67 I + N G + + + TI L+GPNG GK+T+ K I I P I + Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324 Query: 68 KRHPQLIVGYVPQKVTI----ENTLPL-----SLMRFMTLSMPSSRDDVLQILDRVNLIG 118 +++ T+ + L L LM + ++ + + ++ D + IG Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384 Query: 119 KY--------------------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 R SGG R LA+AL +P LL+LDEP +D Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444 Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR 203 + L + +++ +L++SH+ + + +I L+N+ Sbjct: 445 LNAVIWLDNYLQGWKKT----LLIVSHDQGFLDSVCTDIIHLDNQ 485 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 90.7 bits (225), Expect = 3e-19 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I N + + G K + ++N I E + LIGP+GSGK+T K+I +I+PT G + Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112 + I +GYV Q++ T+E + L + + + R+ ++L Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLA 119 Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 V L ++ +R +LSGG+ QR +A+AL P LL++DEP +D L E Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNNRIC 205 ++Q G I+ ++H++ D L +RI Sbjct: 180 RLQQELGKTIVFVTHDI-------DEAFRLADRIA 207 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 90.9 bits (226), Expect = 3e-19 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + L + G K L ++ +++ E+ L+G NG+GKST+ K+++G+ KP G + Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130 + + P+ R ++M V Q LS G Sbjct: 61 GKEVSFASPRD-----------ARRAGIAM------VYQ-----------------LSVG 86 Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 E Q +A+AL R LL+LDEP + L+++I +R G ++ ISH L V Sbjct: 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 Query: 191 MASTDTVICLNN 202 D V L + Sbjct: 146 FEIADRVTVLRD 157 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 90.6 bits (225), Expect = 4e-19 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 34/214 (15%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I + N + +L+ I+ T+K E+V +IGP+GSGKST+ + I + +P G++ Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 Query: 71 PQLI-------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 + VG V P +EN + L+ ++ +S + + L++ Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLEN-ITLAPIKVKGMSKAEAEERALEL 119 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 L++V L K + LSGG+ QR +A+AL P +++ DEP +D P EL+ Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD-P------ELVG 172 Query: 171 SVRQ------STGCGILLISHNLHMVMASTDTVI 198 V G +++++H + D VI Sbjct: 173 EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 89.6 bits (222), Expect = 6e-19 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%) Query: 9 PLISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 P + +S +F Y+ + + + + ++ +G NG GKST+ K++ G + PT G Sbjct: 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGI 420 Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLIGKY-NRNI 124 V RHP+L + Y Q ++ + FM S P + +++ + L L G+ ++I Sbjct: 421 VGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI 480 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 LSGG+ R A P+LLVLDEP +D SL L +++ G G++L+S Sbjct: 481 ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD---SLGALAKALKNFNG-GVVLVS 536 Query: 185 HNLHMVMASTDTV-ICLNNRI 204 H+ + + + + + ++ Sbjct: 537 HDEEFISSLCKELWVVEDGKV 557 Score = 59.6 bits (144), Expect = 7e-10 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 22/203 (10%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I + N G +L N T+ L+G NG GKST+ + I G V Sbjct: 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF 134 Query: 71 P--QLIVG-YVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVNLIG------KY 120 Q + G ++ + + F+ + + +I D++ L G Sbjct: 135 HVEQEVRGDDTEALQSVLES-DTERLDFLAEEKELLAGLTLEEIYDKI-LAGLGFTPEMQ 192 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 + K LSGG R LA+AL KP+LL+LDEP +D L + + + + Sbjct: 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKIT----S 248 Query: 181 LLISHNLHMVMASTDTVICLNNR 203 L++SH+ + + +I L N Sbjct: 249 LIVSHDRNFLNTVCTDIIHLENL 271 Score = 34.9 bits (80), Expect = 0.018 Identities = 13/40 (32%), Positives = 23/40 (57%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78 + ++G + KST+ +++ G + PT G V P L + YV Sbjct: 329 IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV 368 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 89.5 bits (222), Expect = 7e-19 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 28/219 (12%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67 ++ L S G+K L D++F++ P E+ LIGPNG+GK+T+ +ITG +P G V Sbjct: 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63 Query: 68 -------KRHP-----QLIVGYVPQK------VTIENTLPLSLMR----FMTLS---MPS 102 + P + +G QK +T+ L L+L R F +L Sbjct: 64 FDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE 123 Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 R + ++L + L + +R LS G+ Q + L + P LL+LDEP+ G+ Sbjct: 124 ERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAET 183 Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201 EL+ S+ IL++ H++ V D V L+ Sbjct: 184 EKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLH 220 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 89.1 bits (221), Expect = 9e-19 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 26/213 (12%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--- 74 K I+F + E+ + G +G+GKST+ + I G+ KP G++ + ++ Sbjct: 6 IEKRLPDFTLKIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64 Query: 75 ------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 +G V Q+ + + L L R R V ++LD + L Sbjct: 65 RKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR---KRNREDRISVDELLDLLGL 121 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 NR LSGGE QR LA+AL +P LL+LDEP +D L L + ++++ Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181 Query: 177 GCGILLISHNL-HMVMASTDTVICLNNRICYQG 208 ++ ++H+L + V+ + R+ Y G Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 89.1 bits (221), Expect = 9e-19 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%) Query: 3 NALSITPLISLSNTSFHKNGYK---ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59 + S + L + L+DI+F I E V +IG NG+GKST+ KLI GI Sbjct: 17 HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 Query: 60 IKPTIGSVKRHPQLI------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR 113 KPT G VK ++ G+ P+ EN + L+ + V +I++ Sbjct: 77 YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI--YLRGLILGLTRKEIDEKVDEIIEF 134 Query: 114 VNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELSLYELIT 170 L G + ++ +K S G + R + A +P++L+LDE L D F E L L Sbjct: 135 AEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF-QEKCLERLNE 192 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 V ++ I+L+SH+L + D I L + +I +G P+ + Sbjct: 193 LVEKNK--TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 88.7 bits (220), Expect = 1e-18 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 36/241 (14%) Query: 9 PLISLSNTS--FHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII-KPT 63 PL+S+ N S FH+ G + ++ I+F I+ E + L+G +GSGKS A I G++ P Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA 64 Query: 64 I----GSVKRHPQLIVGYVPQK-----------------------VTIENTLPLSLMRFM 96 GS+ + ++ ++ TI L L Sbjct: 65 AAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR 124 Query: 97 TLSMPSSRDDVLQILDRVNL---IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 LS ++R L++L+ V + + + +LSGG+ QR ++A AL +P+LL+ DEP Sbjct: 125 GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184 Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQT 212 +D + + +L+ ++ G IL I+H+L +V D V + + I G +T Sbjct: 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244 Query: 213 I 213 + Sbjct: 245 L 245 Score = 83.7 bits (207), Expect = 4e-17 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 26/224 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT-----------------IGS 66 + + I+ T++ + + L+G +GSGKST+ + +I + Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360 Query: 67 VKRHPQLIV----GYVPQKVTIENTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGK-Y 120 ++R Q++ G + ++T+ + L + LS V++ L+ V L Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 NR + SGG+ QR +A+AL+ KP L++LDEP +D + + +L+ ++Q G Sbjct: 421 NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN--AEYIR 221 L ISH+L +V A VI + + +I QGP + + N EY R Sbjct: 481 LFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 88.3 bits (219), Expect = 2e-18 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 26/241 (10%) Query: 6 SITPLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP 62 SI I N F + KIL+ ++ I + V L+GP+GSGKST+ +L+ P Sbjct: 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405 Query: 63 TIGSV----KRHPQLIVGYVPQKVTIENTLP----LSLMRFMTLSMPS-SRDDVLQILDR 113 T G V + L + ++ ++ + + P ++ + P +R+++ + Sbjct: 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 Query: 114 VN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 N L Y+ + + LSGG+ QR +A+AL+R P +L+LDE +D E Sbjct: 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-PPQTIKDNAEYIR 221 + E + + S G ++++H L + + + +I QG + I Y Sbjct: 526 RVVQEAL--DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSS 583 Query: 222 L 222 L Sbjct: 584 L 584 Score = 79.1 bits (195), Expect = 9e-16 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%) Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 I N SF + +L +++ +I+ + V L+GP+GSGKST+ L+ P G V Sbjct: 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVN 115 K + + +G V Q+ + N ++ + S +++++ N Sbjct: 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG---TIRENIAYGSEEVSEEEIIEAAKLAN 1104 Query: 116 -------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 L Y+ + + LSGG+ QR +A+A+LR P +L+LDE +D E Sbjct: 1105 AHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV 1164 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222 + E + + ++I+H L + + + N ++ QG + Y RL Sbjct: 1165 VQEALDRAMEGRTT--IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRL 1221 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 88.4 bits (219), Expect = 2e-18 Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 20/192 (10%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV------------ 75 D NFT+ I L GP+GSGK+++ +I G+ +P G ++ + +++V Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75 Query: 76 ---GYVPQKVTI--ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130 GYV Q + T+ +L M SM + D ++ +L +L+ +Y LSGG Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG---TLSGG 132 Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 E QR + +ALL P LL++DEPL +D P + + + +R IL +SH+L V Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 Query: 191 MASTDTVICLNN 202 + D V+ L N Sbjct: 193 LRLADRVVVLEN 204 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 87.9 bits (218), Expect = 2e-18 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 17/190 (8%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ------LIVG 76 + L+D++F + E + LIG NG+GKST+ +L+ GI P G+V + L G Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG 94 Query: 77 YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIGKY-NRNIKDLSGGEF 132 + P+ EN + SR ++ + +D + + +G + + +K S G Sbjct: 95 FNPELTGRENI------YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMK 148 Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192 R A A +P++L++DE L D + + G ++L+SH+ + Sbjct: 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVILVSHDPSSIKR 207 Query: 193 STDTVICLNN 202 D + L Sbjct: 208 LCDRALVLEK 217 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 88.0 bits (218), Expect = 2e-18 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 9/182 (4%) Query: 11 ISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I+L N S +G +L ++NF ++P E + + G +G+GK+++ + + G+ G + Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452 Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL---IGKYNRNI-- 124 + ++PQ+ + + + + S +++ +L +V L + + Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW 512 Query: 125 -KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 + LSGGE QR A+ LL KP + LDE +D E LY+L+ + ++ + Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK--EELPDATVISV 570 Query: 184 SH 185 H Sbjct: 571 GH 572 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 87.7 bits (217), Expect = 3e-18 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 24/230 (10%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIVGYV 78 ++D++F + EI L+G NG+GK+T+ ++I ++ P G V R P + + Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77 Query: 79 ---------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129 ++T L R LS + + ++ R+ L+ +R + + S Sbjct: 78 GVLFGERGLYARLTARENL-KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136 Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189 G Q+ +A+AL+ P++LVLDEP G+D ++ I ++ ++ SH + Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA-VIFSSHIMQE 195 Query: 190 VMASTDTVICLNN-RICYQGPPQ-----TIKDNAEYIRLFGTRATEILAI 233 V A D VI L+ + +G + T+ N E I F + E I Sbjct: 196 VEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEEGTFI 245 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 87.5 bits (217), Expect = 3e-18 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 29/224 (12%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67 + D++ ++ EI ++G +GSGKST+ + I +I+PT G V Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 Query: 68 KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 +R +V +P + +EN L + + + + L+ V L G ++ Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPRAEREERAAEALELVGLEGWEHK 156 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 +LSGG QR LA+AL P++L++DE +D + + + ++ I+ Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216 Query: 183 ISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223 I+H+L + D + + + R+ G P+ I N +Y+R F Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREF 260 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 86.8 bits (215), Expect = 5e-18 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 20/203 (9%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------K 68 L D+N I E V L+GP+G GK+T ++I G+ +PT G + Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71 Query: 69 RHPQLIV---GYVPQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124 R ++ P +N L L + + +V ++L +L+ +R Sbjct: 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL---DRKP 128 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 K LSGG+ QR L +A++R+P + ++DEPL +D + + + ++Q G + ++ Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188 Query: 185 HNLHMVMASTDTVICLNNRICYQ 207 H+ M D + +N+ Q Sbjct: 189 HDQVEAMTMADRIAVMNDGQIQQ 211 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 86.5 bits (214), Expect = 6e-18 Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 17/197 (8%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81 + T EI ++GP+GSGKST+ LI G P G V + + P Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 Query: 82 ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132 +T+E + L L + L+ R + L RV L G R +LSGGE Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGER 134 Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192 QR LA+ L+R +L+LDEP +D + +L+ + T +L+++H Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 Query: 193 STDTVICLNN-RICYQG 208 V+ L+N RI QG Sbjct: 195 LAQRVVFLDNGRIAAQG 211 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 86.6 bits (214), Expect = 6e-18 Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 30/216 (13%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I SN +F + G +L DI+FT++P + V L+GP+G+GKSTI +L+ GS+ Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL-------QIL 111 Q I +G VPQ + N L +R+ + PS+ ++ + QI Sbjct: 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRY---AKPSASNEEVYAAAKAAQIH 654 Query: 112 DRV-NLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 DR+ YN + + LSGGE QR +A+ +L+ P++++LDE +D E ++ Sbjct: 655 DRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ 714 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 + + ++++H L ++ + D ++ ++N Sbjct: 715 AALARL--CANRTTIVVAHRLSTIV-NADLILVISN 747 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 86.5 bits (214), Expect = 6e-18 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 5/188 (2%) Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL- 90 +I +E++ ++GPNG GK+T K++ G++KP G ++ V Y PQ + + + Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79 Query: 91 SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150 L+ +T + +I + + +R + +LSGGE QR +A L + ++ +L Sbjct: 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139 Query: 151 DEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-- 208 DEP +D L ++I ++ ++ H++ M+ D +I G Sbjct: 140 DEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVA 199 Query: 209 -PPQTIKD 215 PPQ+++ Sbjct: 200 NPPQSLRS 207 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 86.3 bits (214), Expect = 6e-18 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 37/189 (19%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74 ++D++F ++ EIV + G G+G++ +A+ + G+ P G + + + Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 Query: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQ 133 + YVP E+ L+ L + + + L L LSGG Q Sbjct: 76 GIAYVP-----EDRKREGLV----LDLSVAENIALSSL---------------LSGGNQQ 111 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193 + +LA+ L R P +L+LDEP +G+D + +Y LI + + G +LLIS L ++ Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGL 170 Query: 194 TDTVICLNN 202 D ++ + Sbjct: 171 CDRILVMYE 179 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 85.7 bits (212), Expect = 9e-18 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 13/189 (6%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 ++ N S + + D++FT+ E + + GPNG+GK+T+ +++ G+++P G V Sbjct: 1 MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60 Query: 69 ---RHPQLIVGYVPQKVTI---ENTLPLSL-----MRFMT-LSMPSSRDDVLQILDRVNL 116 Q + Q + + + L + F + + + L +V L Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGL 120 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 G + + LS G+ +R LA+ L L +LDEP +D G L L+ + Sbjct: 121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180 Query: 177 GCGILLISH 185 G +LL +H Sbjct: 181 G-IVLLTTH 188 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 85.5 bits (212), Expect = 1e-17 Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 21/200 (10%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYV 78 G +IL+ +N TIK E+ L+GPNGSGKST+AK I G + T G + + I Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT--- 67 Query: 79 PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD-LSGGEFQRALL 137 + E L + F+ P V + R + + SGGE +R + Sbjct: 68 --DLPPEERARLGI--FLAFQYPPEIPGV--------KNADFLRYVNEGFSGGEKKRNEI 115 Query: 138 AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV-MASTDT 196 + LL +P+L +LDEP G+D + E+I +R G +L+I+H ++ D Sbjct: 116 LQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKPDR 174 Query: 197 V-ICLNNRICYQGPPQTIKD 215 V + + RI G + + Sbjct: 175 VHVLYDGRIVKSGDKELALE 194 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 85.2 bits (211), Expect = 1e-17 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%) Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 I N SF + IL+ ++ TI P + V L+G +G GKST+ L+ PT G + Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR--- 113 R + +G V Q+ + + ++ + P + D+ ++ + Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG---TIAENIRYGKPDATDEEVEEAAKKAN 117 Query: 114 -----VNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 ++L Y+ + + LSGG+ QR +A+ALLR P +L+LDE +D E Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222 + E + + ++I+H L + + + N ++ QG + Y +L Sbjct: 178 VQEALDRAMKGRTT--IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 84.5 bits (209), Expect = 2e-17 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 34/241 (14%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG----------- 58 I + F + K+L+ ++FTI E V ++G NGSGKSTI +L+ Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILID 411 Query: 59 ---IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV- 114 I + ++ S+++ +G VPQ + N L +++ S S ++V++ R Sbjct: 412 GQDIKEVSLESLRQ----SIGVVPQDSVLFNDTILYNIKYGNPSA--SDEEVVEACKRAG 465 Query: 115 ------NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 L Y + LSGGE QR LA+A L+ +L+LDE +D E Sbjct: 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETERE 525 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFG 224 + ++I V +G +++I H L ++ ++ N + G + +E Sbjct: 526 ILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLW 583 Query: 225 T 225 T Sbjct: 584 T 584 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 84.6 bits (209), Expect = 2e-17 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 22/202 (10%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GS 66 ++ L N S G +L ++NFTI EIVTL+GP+G GKST+ + G + G Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61 Query: 67 VKRHPQLI---------VGYVPQKVTIENTLP-LSLMRFMTLSMPSS------RDDVLQI 110 + + Q + +G + Q + P LS+ + + ++P++ R+ Sbjct: 62 LWLNEQRLDMLPAAQRQIGILFQDALL---FPHLSVGQNLLFALPATLKGNARRNAANAA 118 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 L+R L G ++++ LSGG+ R L +ALL +P L+LDEP +D + + Sbjct: 119 LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVF 178 Query: 171 SVRQSTGCGILLISHNLHMVMA 192 S ++ G + ++H+L V A Sbjct: 179 SEVRAAGIPTVQVTHDLQDVPA 200 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 83.7 bits (207), Expect = 5e-17 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 27/220 (12%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYVP 79 +IL+ +N T+K E+ ++GPNGSGKST+A I G + T G + + I+ P Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75 Query: 80 QK-----VTIENTLP-----LSLMRFMTLSMPSSRDD----------VLQILDRVNLIGK 119 + + + P ++ F+ +M + R + + + + L + Sbjct: 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135 Query: 120 Y-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 + R + + SGGE +R + + LL +P L +LDEP G+D + E I ++R+ G Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-G 194 Query: 178 CGILLISHNLHMVMAST-DTV-ICLNNRICYQGPPQTIKD 215 G+L+I+H ++ D V + + RI G P+ ++ Sbjct: 195 RGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEE 234 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 83.1 bits (205), Expect = 6e-17 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 37/228 (16%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67 + D + ++ EI ++G +GSGKST+ +L+ +I+PT G + Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 Query: 68 KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 +R +V +P + +EN L + + + L+ L+ V L G ++ Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPKAEREERALEALELVGLEGYADK 160 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELS--LYELITSVRQSTGC 178 +LSGG QR LA+AL P++L++DE +D E+ L EL ++++ Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT--- 217 Query: 179 GILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNA--EYIRLF 223 I+ I+H+L + D + I + I G P+ I N +Y+R F Sbjct: 218 -IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 83.0 bits (205), Expect = 7e-17 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 20/201 (9%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------RHPQL 73 NG L IN +I E V L+GP+G+GKST+ KLI PT G+++ Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71 Query: 74 IVGYVPQKVTI---ENTLPLSLMRFMTLSMP---------SSRDDVLQILDRVNLIGKYN 121 + Y+ +K+ + + L + ++ R V L+ V L K+ Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 +LSGGE QR +A+A++ P +L+ DEP +D + L+ + ++ G ++ Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVV 190 Query: 182 LISHNLHMVMASTDTVICLNN 202 + +H +V + VI L Sbjct: 191 VATHAKELVDTTRHRVIALER 211 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 82.7 bits (204), Expect = 8e-17 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 13/179 (7%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74 ++G + ++FT+ E + + GPNGSGK+T+ +++ G+ P G V + + Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69 Query: 75 -----VGYVPQKVTIENTL-PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128 + Y+ I+ TL L +RF S + V + L RV L G +R + LS Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQVEEALARVGLNGFEDRPVAQLS 127 Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 G+ +R LA+ LL L +LDEP +D G E + G +L +L Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 82.6 bits (204), Expect = 9e-17 Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 31/239 (12%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 + N +F +G +L+DI+ I E V L+GP+GSGKST+ LI G + Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 Query: 69 ------RHPQL-----IVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN- 115 R L +G V Q V + N ++ + P ++R++V + N Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFND---TVAENIAYGRPGATREEVEEAARAANA 117 Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 L Y+ I + LSGG+ QR +A+ALL+ P +L+LDE +D E + Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP-PQTIKDNAEYIRLF 223 + R +I+H L + + V+ + +I +G + + Y +L Sbjct: 178 QAALE--RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 82.2 bits (203), Expect = 1e-16 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 32/204 (15%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +S++N SF + ++L++++ +K E + L+G +GSGKST+ +L+TG +KP G + Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI- 59 Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNI--K 125 +L + + ++ +L+ R L RN + Sbjct: 60 ----------------------TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 SGGE QR LA+ LL+ +++LDEP G+D E L LI V + ++ I+H Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITH 155 Query: 186 NLHMVMASTDTVICLNN-RICYQG 208 +L + D ++ L N +I QG Sbjct: 156 HL-TGIEHMDKILFLENGKIIMQG 178 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 81.6 bits (201), Expect = 2e-16 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 22/211 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 + L+ L + KIL +I+ +++ E + + GP+G GKST+ K++ +I PT G++ Sbjct: 1 SMLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60 Query: 68 KRHPQLI-----------VGYVPQKV-----TIENTLPL-SLMRFMTLSMPSSRDDVLQI 110 + + V Y Q T+E+ L +R + R L + Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR----NRRPDRAAALDL 116 Query: 111 LDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L R L +NI +LSGGE QR L + L P +L+LDE +D + ++ E+I Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICL 200 + +L I+H+ + D VI L Sbjct: 177 HRYVREQNVAVLWITHDKDQAIRHADKVITL 207 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 81.2 bits (200), Expect = 2e-16 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 20/204 (9%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS--VKRHPQLIV 75 F + + ++ ++FT++ + + +IG NGSGKST+AK++ G+I+PT G + HP Sbjct: 21 FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80 Query: 76 GYVPQ-----------------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIG 118 Y + ++ I L L L R + + L V L+ Sbjct: 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140 Query: 119 KY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 + N L+ G+ QR LA+AL+ +P +++ DE L +D L L+ +++ G Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 Query: 178 CGILLISHNLHMVMASTDTVICLN 201 + ++ ++ M+ +D V+ ++ Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 80.0 bits (197), Expect = 5e-16 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 35/241 (14%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67 I+ + F +G IL +I+ IKP E+V ++G +GSGKST+ KLI P G V Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 Query: 68 ----------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + VG V Q+ + N S+ + L+ P + ++++ L Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNR---SIRDNIALADPGM--SMERVIEAAKLA 115 Query: 118 GK----------YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 G Y+ + + LSGG+ QR +A+AL+ P +L+ DE +D+ E Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222 ++ + + G +++I+H L V + ++ RI QG + +N Y L Sbjct: 176 AIMRNMHDI--CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 Query: 223 F 223 + Sbjct: 234 Y 234 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 80.0 bits (197), Expect = 6e-16 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 26/185 (14%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74 IL+ + +K E V ++GP+GSGKST+ ++ G+ P+ G V+ Q + Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 Query: 75 -----VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121 VG+V P +EN LPL L S SR +L+ V L + Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKRLT 141 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 LSGGE QR LA+A +P++L DEP +D + +L+ ++ + G ++ Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 Query: 182 LISHN 186 L++H+ Sbjct: 202 LVTHD 206 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 79.8 bits (197), Expect = 6e-16 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 35/240 (14%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP-----T 63 P I + + + + L+DIN I N++ LIGP+G GKST+ + + + Sbjct: 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65 Query: 64 IGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMT--LSMPSSRDDVL 108 G V + I VG V QK N P+S+ + L + +D L Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQK---PNPFPMSIYDNVAYGLRLHGIKDKEL 122 Query: 109 -----QILDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 L + L + +++ LSGG+ QR +A+AL KP +L++DEP +D Sbjct: 123 DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTIKDNAE 218 L + ELIT +++ I++++HN+ +D T + GP I N + Sbjct: 183 ISTLKIEELITELKKKY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 79.6 bits (196), Expect = 8e-16 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 31/229 (13%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIGSV 67 ++LS+ K IL+ ++ T KP E++ ++GP+GSGK+T+ + G + G + Sbjct: 31 LTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90 Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLS--LMRFMTLSMPSSR---------DDVL 108 R + I GYV Q + TL + L L +PSS ++V+ Sbjct: 91 LLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI 150 Query: 109 QILD----RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 L LIG N I+ LSGGE +R +A LL P++L LDEP G+D L Sbjct: 151 SELGLEKCADTLIG--NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQ 208 Query: 165 LYELITSVRQSTGCGILLISHNL-HMVMASTDTVICLNN-RICYQGPPQ 211 + +L+ + +S G ++ H + D ++ L+ + Y G P+ Sbjct: 209 VVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 78.7 bits (194), Expect = 1e-15 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--------TIGSVKRHPQL-- 73 +IL D++ ++ +++ ++G +GSGK+T+ I+G ++ R P Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 Query: 74 -IVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD---DVLQILDRVNLIGKYNRN 123 V YV Q +T+ TL + + + + +L + L Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ--STGCGIL 181 +K +SGGE +R +A LL P +L+LDEP G+D + L++++ Q ++ Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD---SFTALNLVSTLSQLARRNRIVI 197 Query: 182 LISH 185 L H Sbjct: 198 LTIH 201 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 78.5 bits (193), Expect = 2e-15 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 22/221 (9%) Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI------ENTLPL 90 EI+ L+GPNG+GKST+ + G+ GS++ Q + + ++ + P Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84 Query: 91 SLM---RFMTLSMPSSR--DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLR-- 143 M ++TL P + + + + L K R+ LSGGE+QR LA +L+ Sbjct: 85 FAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 Query: 144 -----KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 LL+LDEP+ +D + +L L++++ Q G I++ SH+L+ + Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAW 203 Query: 199 CLNNRICY-QGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238 L G + + + +G L I H Sbjct: 204 LLKRGKLLASGRREEVLTPPVLAQAYGMN-FRRLDIEGHPM 243 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 78.3 bits (193), Expect = 2e-15 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 31/176 (17%) Query: 11 ISLSNTSFHK-NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 I L N S +G +L+D++F IKP + + + GP+G+GKS++ + + G+ G + Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129 + ++PQ+ + TL R+ ++ D V LSG Sbjct: 61 PEGEDLLFLPQR---------PYLPLGTL-----REQLIYPWDDV------------LSG 94 Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 GE QR A+ LL KP + LDE +D E LY+L+ + G ++ + H Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL----KELGITVISVGH 146 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 77.9 bits (192), Expect = 2e-15 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 38/211 (18%) Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--GSV 67 ++++ S K +L++++ KP E+ ++GP+G+GKST+ + G G V Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68 Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119 KR + I+GYVPQ ++ L +L TL Sbjct: 69 LINGRPLDKRSFRKIIGYVPQ----DDILHPTLTVRETLM-------------------- 104 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 + ++ LSGGE +R +A L+ P+LL LDEP G+D L + L+ + TG Sbjct: 105 FAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRT 163 Query: 180 ILLISHNLHMVMAST-DTVICLNN-RICYQG 208 I+ H + D ++ L+ R+ Y G Sbjct: 164 IICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 77.8 bits (192), Expect = 3e-15 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 19/190 (10%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 L+DIN + E+V ++GP GSGKS++ + G ++ GSV + YV Q+ I Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--IAYVSQEPWI 77 Query: 85 ENT---------LPLSLMRFMTLSMPSSRDDVLQILDRVNL--IGKYNRNIKDLSGGEFQ 133 +N P R+ + + + L+IL +L IG+ N LSGG+ Q Sbjct: 78 QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGIN---LSGGQKQ 134 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE-LITSVRQSTGCGILLISHNLHMVMA 192 R LA+A+ ++ +LD+PL +D ++E I + + +L++H L ++ Sbjct: 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT-RILVTHQLQLLPH 193 Query: 193 STDTVICLNN 202 + D ++ L+N Sbjct: 194 A-DQIVVLDN 202 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 77.7 bits (192), Expect = 3e-15 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 17/119 (14%) Query: 50 STIAKLITGIIKPTIGSVKRHPQLI------------VGYVPQKVTIENTLPLSLMRFMT 97 ST+ KLITG+++PT G++ + +G V Q + L++ + Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLF--PELTVRENLF 58 Query: 98 LSMPSSRDD--VLQILDRVNLIGKYNRN-IKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 + D + L+RV L +R+ + LSGG+ QR +A+ALL+KP LL+LDEP Sbjct: 59 FGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 77.2 bits (190), Expect = 4e-15 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 31/226 (13%) Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74 + + N +L+ I+FTIKP E V ++G G+GKS++ + +++P G + I Sbjct: 1145 SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 Query: 75 -----------VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI----- 117 + +PQ + T+ +L F S D++ + L+R L Sbjct: 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY----SDDEIWEALERCQLKDVVSS 1260 Query: 118 --GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 G + + + S G+ Q LA+ALLRK +LVLDE +D + + + I Sbjct: 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216 + C +L I+H L+ VM S D V+ L R+ P + + Sbjct: 1321 --EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELLSD 1363 Score = 74.5 bits (183), Expect = 2e-14 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%) Query: 8 TPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 I + N SF ++ L+DINF IK ++V ++GP GSGKS++ I G + Sbjct: 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575 Query: 65 GSVKRHPQLIVGYVPQKVTI------ENTL---PLSLMRFMTLSMPSSRDDVLQIL---D 112 GSV + V YVPQ+ I EN L P R+ + + L+IL D Sbjct: 576 GSVAVNG--SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE--LIT 170 IG+ N LSGG+ QR LA+A+ + ++ +LD+PL +D ++E + Sbjct: 634 LTE-IGERGIN---LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG 689 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 +R T ++L++H L + D +I L + +I G + + + Sbjct: 690 LLRGKT---VILVTHQLQ-FLPHADQIIVLKDGKIVESGTYEELLKS 732 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 76.9 bits (189), Expect = 4e-15 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80 +LQD++FT+ P E+ L+GP+GSGKST+ L+ +P G V K Q Y+ Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 Query: 81 KVTIENTLPL-----------------SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 KV++ P+ S + + + L Y+ Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-----GYDTE 143 Query: 124 IKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 + + LSGG+ QR +A+AL+R P +L+LDE +D E + + + + Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--T 201 Query: 180 ILLISHNLHMV 190 +L+I+H L V Sbjct: 202 VLVIAHRLSTV 212 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 75.9 bits (187), Expect = 9e-15 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 41/225 (18%) Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74 + + N +L++I+F+IKP E V ++G GSGKS++ + +++ + GS+ I Sbjct: 9 SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68 Query: 75 -----------VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + +PQ + N P S +++ Q L+RV L Sbjct: 69 SKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---------YSDEELWQALERVGLK 119 Query: 118 -------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 G + +++ LS G+ Q LA+ALLRK +LVLDE +D + + Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210 + I C +L I+H L ++ S D ++ L+ R+ P Sbjct: 180 KTIREAF--KDCTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 75.3 bits (185), Expect = 2e-14 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%) Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ++ N SF + + IL I+FTI + V ++G +G+GKSTI +L+ GS+ Sbjct: 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI 322 Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRF----MTLSMPSSRDDVLQILDRV 114 Q I +G VPQ + N +++ T + + QI D + Sbjct: 323 DGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFI 382 Query: 115 NLI------GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 + G R +K LSGGE QR +A+ +L+ P +L+LDE +D E ++ Sbjct: 383 QSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 + V S G L+I+H L + D +I L+N Sbjct: 442 LREV--SAGRTTLVIAHRLSTI-IDADEIIVLDN 472 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 72.8 bits (178), Expect = 8e-14 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68 I L+ + ++ L DI E + L+GP+G+GKS++ +++ + P G++ Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 69 -------RHP--------QLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDV 107 + P + VG V Q+ +T++ L + R + LS + Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 ++L R+ L +R LSGG+ QR +A+AL+ +P +L+ DEP +D + Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208 +I + TG ++++H + + + V+ + N I QG Sbjct: 183 IIKEL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 70.3 bits (172), Expect = 4e-13 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 31/229 (13%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-----------KRHPQL 73 L ++ I + VT+IG NG+GKST+ I G +KPT G + Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 Query: 74 IVGYVPQK--------VTIENTLPLSLMRFMTLSMPSS-----RDDVLQILDRVNLIGKY 120 ++ V Q +TIE L L+ R + S+ R + L R+ L G Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL-GLE 139 Query: 121 NR---NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 NR I LSGG+ Q L A L P +L+LDE +D + EL + + Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199 Query: 178 CGILLISHNLHMVMASTDTVICLNN-RIC--YQGPPQTIKDNAEYIRLF 223 L+++HN+ + + +I L++ +I G + + I++F Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQMF 248 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 70.0 bits (171), Expect = 5e-13 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 39/214 (18%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT------------IGSVKRHP 71 K + ++ T+ EI L+G +GSGKS IAK I G+ K I ++ P Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 Query: 72 QLIVGYVPQKVTIENTLPLSLM-------RFMTLSMPS-------------SRDDVLQIL 111 + V V++ P S + R + ++P+ + +++L Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELL 140 Query: 112 DRVNLIGKYNRNI-----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 RV + K +++I +L+ GE Q+ ++A AL +P LL+ DEP ++ + ++ Sbjct: 141 HRVGI--KDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIF 198 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 L++ + Q++ ILLISH+L M+ D + L Sbjct: 199 RLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 69.9 bits (171), Expect = 6e-13 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%) Query: 12 SLSNTSFHKN--GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68 +L HK +++L+ ++ +++++IG +GSGKST + I + KP+ GS++ Sbjct: 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65 Query: 69 ----------RHPQLIVGYVPQKVTIENTLPLSLMRF-----MT--------------LS 99 + QL Q + L + F MT +S Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125 Query: 100 MPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + + + L +V + K + LSGG+ QR +A+AL +P +++ DEP +D Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD- 184 Query: 160 PGELSLYELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 EL + E++ ++ G +++++H + + VI L+ +I +GPP+ + N Sbjct: 185 -PEL-VGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242 Query: 217 AEYIRL 222 + RL Sbjct: 243 PQSPRL 248 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 68.4 bits (167), Expect = 2e-12 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 28/192 (14%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP---------------------- 71 + +++ L+GPNG GKST K++ G +KP +G P Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83 Query: 72 --QLIVGYVPQKV-TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128 + V PQ V I + + L R + +++D++ L +RNI LS Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLS 141 Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH 188 GGE QR +A AL R + DEP +D L+ LI + + +L++ H+L Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLA 200 Query: 189 MVMASTDTVICL 200 ++ +D + CL Sbjct: 201 VLDYLSDYIHCL 212 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 67.7 bits (165), Expect = 3e-12 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 13/185 (7%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK--------PTIGSVKRHPQLIVG 76 +L+++N IKP ++V ++G +G+GK+T+ ++I G K P G V+ + Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457 Query: 77 YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK--YNRNIKDLSGGEFQR 134 +P + E + S + ++IL+R L Y R +LS G+ +R Sbjct: 458 LIPGE--YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER 515 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA-S 193 A LAK L +PN+L++DE +D + + I+ + + G +++++H + A Sbjct: 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALR 575 Query: 194 TDTVI 198 DT+I Sbjct: 576 PDTLI 580 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 67.2 bits (164), Expect = 3e-12 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG---Y 77 NG ++++++ + + + + GP+G GK+++ +++ G+ T G + + + Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505 Query: 78 VPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL------IGKYNRNI-- 124 +PQ+ T+ + + L S +S +D+L+IL+ V L G ++ + Sbjct: 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDW 565 Query: 125 ---KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 LS GE QR A+ KP +LDE + E +LY + G + Sbjct: 566 DWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC----REMGITFI 621 Query: 182 LISH 185 + H Sbjct: 622 SVGH 625 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 65.7 bits (160), Expect = 9e-12 Identities = 52/225 (23%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 + PL+S+S S K +D++F + P E++ ++G +GSGK+T+ K I+G + P Sbjct: 1 MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60 Query: 65 GSV-----KRHPQLIV---------------GYVPQ--------KVTIENTLPLSLMRFM 96 G+V P+ + G+V Q +V+ + LM Sbjct: 61 GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG 120 Query: 97 TLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155 + R + L+ V + + + + + SGG QR +A+ L+ +P L+ +DEP Sbjct: 121 ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180 Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 G+D + L +L+ + + G +++++H+L + D ++ + Sbjct: 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM 225 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 65.0 bits (158), Expect = 2e-11 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 13/218 (5%) Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 + L N F N + + IN TIK E+V LIG NGSGKST+A L+TG+ +P G + Sbjct: 323 LELRNVRFAYQDNAFH-VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 Query: 69 RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121 + + + V + L L+ + P + LQ L+ + + Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLND 441 Query: 122 RNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 LS G+ +R L ALL + ++LVLDE D Y+++ + + G Sbjct: 442 GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 Query: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNA 217 I ISH+ H D ++ + N + + + A Sbjct: 502 IFAISHDDHY-FIHADRLLEMRNGQLSELTGEERDETA 538 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 64.2 bits (156), Expect = 3e-11 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 44/166 (26%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSL 92 +K E++ ++GPNG+GK+T K++ G + P + + + Y PQ + Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-WDGITPVYKPQYI---------- 70 Query: 93 MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 DLSGGE QR +A ALLR + DE Sbjct: 71 ---------------------------------DLSGGELQRVAIAAALLRNATFYLFDE 97 Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 P +D L+ I + + L++ H+L ++ +D + Sbjct: 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 64.5 bits (157), Expect = 3e-11 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 30/193 (15%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP--QLIVGYV------------- 78 +P +++ L+G NG GKST K++ G KP +G P Q I+ Y Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 Query: 79 ---------PQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127 PQ V + +P ++ + L RD+ ++ D+++L +R ++ L Sbjct: 158 EDNLKAIIKPQYV---DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQL 214 Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 SGGE QR +A ++K ++ + DEP +D L I S+ I+++ H+L Sbjct: 215 SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY-IIVVEHDL 273 Query: 188 HMVMASTDTVICL 200 ++ +D + CL Sbjct: 274 SVLDYLSDFICCL 286 Score = 58.8 bits (142), Expect = 1e-09 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 12/184 (6%) Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS-LMRF 95 EI+ ++G NG+GK+T +++ G +KP G P L V Y PQK++ + + L+ Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG--EIPVLNVSYKPQKISPKREGTVRQLLHT 425 Query: 96 MTLSM---PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 P +DV++ L N+I + ++ LSGGE QR LA L + ++ ++DE Sbjct: 426 KIRDAYMHPQFVNDVMKPLQIENIID---QEVQGLSGGELQRVALALCLGKPADVYLIDE 482 Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN---NRICYQGP 209 P +D + ++I ++ H+ M D VI + Sbjct: 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANS 542 Query: 210 PQTI 213 PQ++ Sbjct: 543 PQSL 546 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 64.1 bits (156), Expect = 3e-11 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74 +L++++F +K E + ++G G+GKST+ + ++ G ++ I Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 Query: 75 --VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131 + +PQ T+ T+ +L F S D+ + RV+ G +LS G+ Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYS-----DEEIYGALRVSEGG------LNLSQGQ 130 Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191 Q LA+ALL++P +LVLDE ID+ + + + I + T IL I+H L ++ Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTII 188 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 63.1 bits (153), Expect = 6e-11 Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 18/206 (8%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 +L ++ G +L++IN I+ E++ + G GSGK+++ LI G ++P+ G +K Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 Query: 72 QLIVGYVPQKVTI------ENTL-PLSLMRFMTLSMPSS---RDDVLQILDRVN-LIGKY 120 + + + Q I EN + +S + S+ + +D+ + ++ N ++G+ Sbjct: 99 R--ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 LSGG+ R LA+A+ + +L +LD P +D E ++E + I Sbjct: 157 GIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213 Query: 181 LLISHNLHMVMASTDTVICLNNRICY 206 L+ S H+ A D ++ L+ Y Sbjct: 214 LVTSKMEHLKKA--DKILILHEGSSY 237 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 61.8 bits (150), Expect = 2e-10 Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 49/242 (20%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR--------- 69 K +IL+DI+ IKP E+ ++GP GSGK+T+ K + G + + S Sbjct: 124 KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK 183 Query: 70 --HPQLIVGYVPQ------KVTIENTLPLSL------MRFMTLS----MPSSRDDVLQIL 111 P+ V Y + ++T+ TL + R+ +S + + D +L+IL Sbjct: 184 EFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL 243 Query: 112 ----DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 L+G N ++ +SGGE +R + + L+ ++L DE +G+D + ++ Sbjct: 244 GLDHCADTLVG--NDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD---SSTAFQ 298 Query: 168 LITSVRQST--GCGILLISHNLHMVMASTDTV-----ICL--NNRICYQGPPQTIKDNAE 218 +I ++RQ L+S ++ S + + L YQGP + E Sbjct: 299 IIKALRQLAHITGATALVS----ILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 Query: 219 YI 220 + Sbjct: 355 DM 356 Score = 51.8 bits (124), Expect = 2e-07 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 35/164 (21%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTI-----AKLITGIIKPTIGSVKRHP------Q 72 ++L +++ KP + L+G +G+GK+T+ + G I+ I + P Sbjct: 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFA 863 Query: 73 LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD------VLQILDRVNLIGKY 120 + GYV Q+ +T+ +L S L +P D V ++++ + L +Y Sbjct: 864 RVSGYVEQQDIHSPELTVRESLRFS----AALRLPKEVSDEEKYEYVEEVIELLEL-KEY 918 Query: 121 NRNI-----KDLSGGEFQRALLAKALLRKPNLLV-LDEPLQGID 158 + LS + +R + L+ P+ ++ LDEP G+D Sbjct: 919 ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 60.6 bits (147), Expect = 4e-10 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 20/163 (12%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSVK--RHPQLI 74 ++ IL+D + +KP E+V ++G GSG ST+ K + + + G + P Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76 Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNIKDLSGGEFQ 133 I + +T V + LD + G N ++ +SGGE + Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLT---------VRETLDFALRCKG--NEFVRGISGGERK 125 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 R +A+AL+ + ++L D +G+D + E++ +R Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLD---SSTALEILKCIRTMA 165 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 60.3 bits (146), Expect = 4e-10 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 28/203 (13%) Query: 11 ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +S + T + G + +L++++ ++ E V L GP+GSGKST+ + + P G + Sbjct: 10 VSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69 Query: 69 -RH-----------PQLI-------VGYVPQKVTI---ENTLPLSLMRFMTLSMP--SSR 104 RH P+ + +GYV Q + + + L + + +P +R Sbjct: 70 VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR 129 Query: 105 DDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 +L R+NL + ++ SGGE QR +A+ + +L+LDEP +D Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRA 189 Query: 164 SLYELITSVRQSTGCGILLISHN 186 + ELI + G ++ I H+ Sbjct: 190 VVVELIREAKAR-GAALVGIFHD 211 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 58.8 bits (142), Expect = 1e-09 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80 G ++ + F I+P + + GPNG GKS++ +++ G+ G + + Y+PQ Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552 Query: 81 KVTIENTLPLSLMRFMTLSM-------PSSRD----------DVLQILDRVNL------I 117 + +M+ P S + D+ ILD V+L Sbjct: 553 R------------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQRE 600 Query: 118 GKYN--RNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 G ++ R+ KD LSGGE QR +A+ +P +LDE + E +++ + Sbjct: 601 GGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA----K 656 Query: 175 STGCGILLISH 185 G +L I+H Sbjct: 657 DAGISLLSITH 667 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 57.7 bits (140), Expect = 3e-09 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 35/209 (16%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--G 65 P++ + N N +IL+ +N +I EI ++GPNGSGKST++K+I G I G Sbjct: 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64 Query: 66 SVKRHPQLIVGYVPQK-------------VTIENTLPLSLMRFMTLSMPSSRDD------ 106 + + I+ P++ + I +S F+ L+ S R Sbjct: 65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPG---VSNADFLRLAYNSKRKFQGLPEL 121 Query: 107 --------VLQILDRVNLIGKY-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 + + L V + + +RN+ + SGGE +R + + L L +LDE G Sbjct: 122 DPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISH 185 +D + E I + S I+LI+H Sbjct: 182 LDIDALKIIAEGINKLMTSENS-IILITH 209 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 54.9 bits (132), Expect = 2e-08 Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85 LQ+++ +I N +V + G +GSGKST+ Y K + Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------------LYASGKARLI 51 Query: 86 NTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLR- 143 + LP R + + D LQ L V L + + LSGGE QR LA L Sbjct: 52 SFLPK-FSRNKLIFI-----DQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSE 105 Query: 144 -KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 L +LDEP G+ L E+I + G ++LI HNL + ++S D +I Sbjct: 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDV-LSSADWII 159 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 48.5 bits (115), Expect = 2e-06 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 32/198 (16%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68 + + G +L++I+F+I P + V L+G GSGKST+ ++ T G ++ Sbjct: 12 YTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV 70 Query: 69 --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI-------G 118 + + G +PQKV I T +L + S +++ ++ + V L G Sbjct: 71 PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS----DEEIWKVAEEVGLKSVIEQFPG 126 Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 + + + D LS G Q LA+++L K +L+LDEP +D ++ + +++Q Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD---PITYQVIRKTLKQ 183 Query: 175 S-TGCGILLISHNLHMVM 191 + C ++L H + ++ Sbjct: 184 AFADCTVILSEHRIEAML 201 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 47.9 bits (114), Expect = 2e-06 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%) Query: 127 LSGGEFQRALLAKALLRKPN---LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVI 881 Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPPQTIKDNAE 218 HNL V+ + D +I L I G P+ + Sbjct: 882 EHNLD-VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA 922 Score = 37.8 bits (88), Expect = 0.002 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%) Query: 121 NRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 +R+ LSGGE QR LA + L VLDEP G+ L E + +R G Sbjct: 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGN 534 Query: 179 GILLISHNLHMVMASTDTVI-------CLNNRICYQGPPQTIKDNAEYIR---LFGTRAT 228 ++++ H+ + A+ D +I I +G P+ + N E + L G + Sbjct: 535 TVIVVEHDEDTIRAA-DHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTI 593 Query: 229 EI 230 E+ Sbjct: 594 EV 595 Score = 34.0 bits (78), Expect = 0.040 Identities = 12/28 (42%), Positives = 21/28 (75%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 L++I+ I N++V + G +GSGKS++A Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43 Score = 27.8 bits (62), Expect = 2.7 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 L++I+ I + G +GSGKST LI + P + Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKST---LINDTLVPAL 652 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 47.9 bits (114), Expect = 3e-06 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%) Query: 127 LSGGEFQRALLAKALLRK---PNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVI 228 Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPP 210 HNL V+ D +I L ++ G P Sbjct: 229 EHNLD-VIKCADWIIDLGPEGGDGGGQVVASGTP 261 Score = 28.2 bits (63), Expect = 1.9 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 L++I+ I + + G +GSGKS+ LI + P + Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSS---LINDTLYPAL 46 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 47.5 bits (113), Expect = 3e-06 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 33/155 (21%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTI---------AKLITGIIKPTIGSVKRHPQLI 74 ++L +I+ +KP + L+G +G+GK+T+ A +ITG I + ++ Q Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS 80 Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134 GYV Q+ DV V +++ ++ LS + +R Sbjct: 81 TGYVEQQ------------------------DVHSPNLTVREALRFSALLRGLSVEQRKR 116 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 + L KP++L LDEP G+D ++ + Sbjct: 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 47.3 bits (112), Expect = 4e-06 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 34/201 (16%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPT---- 63 I +S F +K I D N + L+G NG+GK+T+ K+++G ++ Sbjct: 14 IEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV 73 Query: 64 -------------------IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSR 104 +G I G VP + I ++ + P R Sbjct: 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS---AEHMIFGVGGDDPERR 130 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 + ++ ILD ++L + ++ +S G+ +R + LL+ +L+LDE +D Sbjct: 131 EKLIDILD-IDLRWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185 Query: 165 LYELITSVRQSTGCGILLISH 185 L E + + G I+ +H Sbjct: 186 LLEFLKEECEQRGATIVYATH 206 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 47.1 bits (112), Expect = 4e-06 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA---------------------KLITGIIKPTI 64 L++++ I N++V + G +GSGKS++A + + + KP + Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70 Query: 65 GSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMT-----LSMPSSRDDVLQILDRVNLIG- 118 S++ I + QK T N P S + +T L + +R + + L + +G Sbjct: 71 DSIEGLSPAIA--IDQKTTSRN--PRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL 126 Query: 119 ---KYNRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVR 173 +R+ LSGGE QR LA + L VLDEP G+ L E + +R Sbjct: 127 GYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR 186 Query: 174 QSTGCGILLISHNLHMVMASTDTVI 198 G +L++ H+ + A+ D VI Sbjct: 187 DL-GNTVLVVEHDEDTIRAA-DHVI 209 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 43.2 bits (101), Expect = 7e-05 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 36/197 (18%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------- 67 G L +IN I ++ ++G G GKS++ I G ++ G V Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72 Query: 68 -KRHPQLIVGYVPQK-----VTIENTL----PLSLMRFMTLSMPSSRD---DVLQILDRV 114 + + V Y QK T+E + P + R+ ++ S D+L D+ Sbjct: 73 TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQT 132 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS---LYELITS 171 IG+ N LSGG+ QR +A+AL + N++ LD+P +D LS + E I Sbjct: 133 E-IGERGIN---LSGGQRQRICVARALYQNTNIVFLDDPFSALDI--HLSDHLMQEGILK 186 Query: 172 VRQSTGCGILLISHNLH 188 Q ++L++H L Sbjct: 187 FLQDDKRTLVLVTHKLQ 203 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 42.3 bits (99), Expect = 1e-04 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 48/210 (22%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKST----------------------IAKLITGIIKP 62 +L+ + IKP + V + G GSGKS+ I+KL ++ Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 Query: 63 TIGSVKRHPQLIVGYV-----PQKVTIENTL----PLSLMRFMTLSMPSSRDDVLQILDR 113 + + + P L G + P+ ++ L ++ ++ M S+P D V+ Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV----- 150 Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI-TSV 172 ++ S G+ Q LA+A +RK ++L++DE ID E L +++ T+ Sbjct: 151 -------TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF 203 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN 202 T ++ I+H + ++ D V+ L+ Sbjct: 204 ADRT---VVTIAHRVSTIL-DADLVLVLSR 229 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 42.1 bits (99), Expect = 1e-04 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%) Query: 17 SFHKNGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLI----TGIIKPTIGSVKRHP 71 SFH+ +I F +TLI G NG+GK+TI + + TG + P P Sbjct: 11 SFHER-----SEIEFF----SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP 61 Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI--GKYN----RNIK 125 +LI + ++ + + T++ R L IL+ V G+ N Sbjct: 62 KLI-REGEVRAQVKLAFENANGKKYTIT----RS--LAILENVIFCHQGESNWPLLDMRG 114 Query: 126 DLSGGE------FQRALLAKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGC 178 SGGE R LA+ +L LDEP +D E SL E+I + Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174 Query: 179 GILLISH 185 +++I+H Sbjct: 175 QLIVITH 181 >gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 197 Score = 42.0 bits (99), Expect = 2e-04 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 45/192 (23%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTI------------AKLITGIIKPTI---GSVKRHPQL 73 I F P + ++GPNGSGKS I AK + G + GS R P Sbjct: 18 IPF---PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP-- 72 Query: 74 IVGYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132 + +T +N+ S++ S+ DV +I+ GK + + LSGGE Sbjct: 73 -ANFAEVTLTFDNSDGRYSII---------SQGDVSEII---EAPGKKVQRLSLLSGGE- 118 Query: 133 QRALLAKALL------RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 +AL A ALL R VLDE +D L+ + T ++I+H Sbjct: 119 -KALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKET--QFIVITHR 175 Query: 187 LHMVMASTDTVI 198 M + D + Sbjct: 176 -KGTMEAADRLY 186 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 40.7 bits (95), Expect = 4e-04 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 Y + D+ F + + GPNGSGKSTI I + + +R + G Sbjct: 10 YFVPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC----- 62 Query: 83 TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRA----LLA 138 + + LSGGE + + +LA Sbjct: 63 ----IVAAVSAELIFT-------------------------RLQLSGGEKELSALALILA 93 Query: 139 KALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 A L+ L +LDE +G+D +L E I G +++I+H + D +I Sbjct: 94 LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHL-PELAELADKLI 151 >gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]. Length = 440 Score = 37.3 bits (86), Expect = 0.004 Identities = 13/44 (29%), Positives = 24/44 (54%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 N ++ +++ T +E ++GPNGSGK+T+ I + I Sbjct: 9 NNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52 >gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]. Length = 423 Score = 34.2 bits (78), Expect = 0.030 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 24/122 (19%) Query: 32 TIKPNEIVTLI-GPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQLIVGYVPQKV 82 + P LI G G+ KST+A+ + ++ P I V P+ + K Sbjct: 33 AVDPQIGGALIAGEKGTAKSTLARALADLL-PEIEVVIGCPFNCDPDDPEEMCDECRAKG 91 Query: 83 TIENTLPLSL--MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE--FQRALLA 138 LP + F+ L + ++ D ++ LD K L G FQ LLA Sbjct: 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDI----------EKALEEGPKAFQPGLLA 141 Query: 139 KA 140 +A Sbjct: 142 RA 143 >gnl|CDD|34333 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]. Length = 984 Score = 34.3 bits (78), Expect = 0.034 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQL 73 S GY + +F ++ + G N +GKST+ I ++ PT R Sbjct: 4 QSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSKYPRLEPK 63 Query: 74 IVGYVPQKVTIENTL 88 G ++ + Sbjct: 64 QGGQYGGRLVAIDRE 78 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 34.1 bits (78), Expect = 0.041 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 21 NGYKILQDINFT-IKPNEIVTLIGPNGSGKSTIAKLIT 57 ++ Q I+FT + N + + GP G+GKSTI IT Sbjct: 12 GPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAIT 49 >gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.. Length = 147 Score = 33.6 bits (77), Expect = 0.054 Identities = 12/19 (63%), Positives = 16/19 (84%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ + GP GSGKST+AKL+ Sbjct: 1 IIAIDGPAGSGKSTVAKLL 19 >gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 4600 Score = 33.5 bits (76), Expect = 0.055 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 8 TPLISLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 P+ISLS SF +L+ + + I+ NE L+G G+GK+T+ + + + + Sbjct: 434 IPIISLSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLT 493 Query: 66 SVKRHPQ 72 + + Q Sbjct: 494 VINKSQQ 500 >gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 212 Score = 33.3 bits (76), Expect = 0.058 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 24/139 (17%) Query: 41 LIGPNGSGKSTI------------AKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88 ++GPNGSGKS + +K+ + I + HP L V +V + + Sbjct: 30 IVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV--EVHFQEII 87 Query: 89 PLSLMRFMTLSMPSSRDDVLQ-ILDRVNLIGKYN-RNIKDLSGGEFQRALLAKALL---- 142 L++ + + +R +LQ ++++ + K + +NI +LSGGE + L + AL+ Sbjct: 88 DKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGE--KTLSSLALVFALH 145 Query: 143 -RKPN-LLVLDEPLQGIDF 159 KP L V+DE +DF Sbjct: 146 HYKPTPLYVMDEIDAALDF 164 >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 Score = 32.9 bits (76), Expect = 0.076 Identities = 12/24 (50%), Positives = 18/24 (75%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKP 62 + +IGP GSGK+ +AK + GI+ P Sbjct: 25 LLMIGPPGSGKTMLAKRLPGILPP 48 >gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]. Length = 222 Score = 32.5 bits (74), Expect = 0.10 Identities = 12/24 (50%), Positives = 18/24 (75%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56 +K I+ + GP GSGKST+AK++ Sbjct: 1 MKAAIIIAIDGPAGSGKSTVAKIL 24 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 32.3 bits (73), Expect = 0.13 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 21 NGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLIT 57 ++ +DI+ + + LI GPNG+GKS+I IT Sbjct: 9 KNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAIT 46 >gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]. Length = 407 Score = 31.8 bits (72), Expect = 0.16 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Query: 30 NFTIKPNEIVTLIGPNGSGKST-IAKL 55 N ++ ++ L+GP G GK+T +AKL Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTLAKL 223 >gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.. Length = 154 Score = 31.3 bits (71), Expect = 0.25 Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 + LIG G+GK+T+ +L+ Sbjct: 1 NIVLIGMMGAGKTTVGRLL 19 >gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]. Length = 408 Score = 31.3 bits (71), Expect = 0.26 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Query: 21 NGYKILQDINFTIKPNEI------VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74 N YK +N +++ + LIGP GSGK+ +A+ + I+ Sbjct: 79 NHYK---RLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135 Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI---KDLSGGE 131 GYV + V EN L L L++ + + ++ I D ++ I + + N +D+SG Sbjct: 136 AGYVGEDV--ENIL-LKLLQAADYDVERAERGIIYI-DEIDKIARKSENPSITRDVSGEG 191 Query: 132 FQRALL 137 Q+ALL Sbjct: 192 VQQALL 197 >gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing and modification]. Length = 674 Score = 31.0 bits (70), Expect = 0.32 Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKST 51 YK I + ++ N+++ +IG GSGKST Sbjct: 53 YKYRDQILYAVEDNQVLIVIGETGSGKST 81 >gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]. Length = 178 Score = 30.6 bits (69), Expect = 0.34 Identities = 9/19 (47%), Positives = 15/19 (78%) Query: 39 VTLIGPNGSGKSTIAKLIT 57 + ++GP G+GKST+AK + Sbjct: 3 ILILGPPGAGKSTLAKKLA 21 >gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 203 Score = 30.7 bits (70), Expect = 0.37 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68 V L+GP+ SGK+ + KL TG + T+ S++ Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKYRSTVTSIE 33 >gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.. Length = 150 Score = 30.6 bits (69), Expect = 0.42 Identities = 9/19 (47%), Positives = 15/19 (78%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ ++G +GSGKST+ K + Sbjct: 1 IIVVMGVSGSGKSTVGKAL 19 >gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]. Length = 172 Score = 30.6 bits (69), Expect = 0.45 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 35 PNEIVTLIGPNGSGKSTIAKLI 56 N + LIG G+GKSTI + + Sbjct: 1 RNMNIVLIGFMGAGKSTIGRAL 22 >gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]. Length = 149 Score = 29.8 bits (67), Expect = 0.59 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIK 61 +K ++V L G G+GK+T+ + GI K Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVR---GIAK 47 >gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 Score = 29.9 bits (67), Expect = 0.62 Identities = 9/12 (75%), Positives = 11/12 (91%) Query: 41 LIGPNGSGKSTI 52 ++GPNGSGKS I Sbjct: 28 IVGPNGSGKSNI 39 Score = 29.2 bits (65), Expect = 1.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALL-----RKPN-LLVLDE 152 GK +N+ +LSGGE + L+A AL+ +P +LDE Sbjct: 1065 SARPPGKGVKNLDNLSGGE--KTLVALALIFAIQKYRPAPFYLLDE 1108 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 30.0 bits (67), Expect = 0.66 Identities = 9/11 (81%), Positives = 10/11 (90%) Query: 42 IGPNGSGKSTI 52 +GPNGSGKS I Sbjct: 30 VGPNGSGKSNI 40 >gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 213 Score = 29.7 bits (67), Expect = 0.67 Identities = 11/16 (68%), Positives = 13/16 (81%) Query: 41 LIGPNGSGKSTIAKLI 56 +IGPNGSGKS+I I Sbjct: 28 IIGPNGSGKSSIVCAI 43 >gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning, Replication, recombination and repair]. Length = 1072 Score = 29.5 bits (66), Expect = 0.73 Identities = 10/13 (76%), Positives = 12/13 (92%) Query: 41 LIGPNGSGKSTIA 53 +IGPNGSGKS+I Sbjct: 47 IIGPNGSGKSSIV 59 >gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.. Length = 178 Score = 29.4 bits (66), Expect = 0.85 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 29/177 (16%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMR 94 N ++GPNGSGKS I I ++G + + L L Sbjct: 21 SNSFNAIVGPNGSGKSNIVDAI---------------CFVLGG--KAAKLRRGSLLFLAG 63 Query: 95 FMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALL-------RKPNL 147 + +S V D+ + + + LSGGE ++L A AL+ P Sbjct: 64 GGVKAGINS-ASVEITFDKSYFLVLQGKVEQILSGGE--KSLSALALIFALQEIKPSP-F 119 Query: 148 LVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNR 203 VLDE +D + ++I + + T I++ A V+ ++ Sbjct: 120 YVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVHGV 176 >gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction only]. Length = 733 Score = 29.3 bits (65), Expect = 0.86 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83 K L+ I K + +V L P G GK T A LI + + + ++ +P + Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGK-TEASLILALAL--LDEKIKLKSRVIYVLPFRTI 258 Query: 84 IE 85 IE Sbjct: 259 IE 260 >gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.. Length = 137 Score = 29.3 bits (66), Expect = 0.88 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIG 65 ++ L GP+G GKST+ K + P G Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG 28 >gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.. Length = 194 Score = 29.4 bits (66), Expect = 0.98 Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 + L+GP GSGK T A+ + Sbjct: 1 RILLLGPPGSGKGTQAERL 19 >gnl|CDD|144099 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes. Length = 121 Score = 29.3 bits (67), Expect = 1.0 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 22/87 (25%) Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF--Q----- 133 K+TI N PL + R +L+ L+ +GK++ + + GG Q Sbjct: 18 KITI-NGKPLEEY----FPNETLRMKILEPLELTGTLGKFDIVVT-VKGGGISGQAGAIR 71 Query: 134 ----RALLA-----KALLRKPNLLVLD 151 RAL+A + L+K LL D Sbjct: 72 LAIARALVAYDPELRPELKKAGLLTRD 98 >gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction only]. Length = 517 Score = 29.2 bits (65), Expect = 1.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 38 IVTLIGPNGSGKSTIAKLITGII 60 + L GP G+GKST LI+ ++ Sbjct: 232 LFWLYGPGGNGKSTFVDLISNLL 254 >gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]. Length = 554 Score = 29.3 bits (65), Expect = 1.1 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%) Query: 33 IKPNEIVTLI--GPNGSGKSTIAKLIT 57 I+ N I ++I GP G+GK+T+A+LI Sbjct: 157 IEQNRIPSMILWGPPGTGKTTLARLIA 183 >gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain. Length = 285 Score = 29.2 bits (66), Expect = 1.1 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 +V ++G G GK+T+AK I Sbjct: 21 VVGIVGMGGVGKTTLAKQI 39 >gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 398 Score = 29.2 bits (65), Expect = 1.1 Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 + I I+ ++GP GK+T+ KL+ + I Sbjct: 28 RLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEI 65 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 29.0 bits (65), Expect = 1.2 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 36 NEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 + L+G +G GKST+ + + G + Sbjct: 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 >gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular trafficking and secretion]. Length = 340 Score = 29.1 bits (65), Expect = 1.3 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-IAKL 55 +I KP I+ +G NG GK+T IAKL Sbjct: 130 PLEIPKEKKPFVIL-FVGVNGVGKTTTIAKL 159 >gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Energy production and conversion, Replication, recombination and repair]. Length = 634 Score = 28.9 bits (64), Expect = 1.3 Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 + I+ L GP+G GKST K+++ + + Sbjct: 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 >gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]. Length = 436 Score = 29.0 bits (65), Expect = 1.3 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 41 LIGPNGSGKSTIAKLITGIIK 61 L GP G+GK+T+A+LI G Sbjct: 53 LWGPPGTGKTTLARLIAGTTN 73 >gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]. Length = 179 Score = 28.7 bits (64), Expect = 1.3 Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 ++T+ G GSGK+T+A+ + Sbjct: 2 VITISGLPGSGKTTVAREL 20 >gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 Score = 28.7 bits (65), Expect = 1.4 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 41 LIGPNGSGKSTIAKLI 56 L GP G+GK+T+AK + Sbjct: 3 LYGPPGTGKTTLAKAV 18 >gnl|CDD|30190 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).. Length = 200 Score = 28.7 bits (64), Expect = 1.5 Identities = 6/25 (24%), Positives = 15/25 (60%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62 + G +G+GK+T+ +L+ ++ Sbjct: 2 FIVFEGIDGAGKTTLIELLAERLEA 26 >gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation. Length = 205 Score = 28.6 bits (65), Expect = 1.5 Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 33 IKPNEIVTLIGPNGSGKSTIA 53 I+ N+IV IGP G+GK+ +A Sbjct: 16 IRKNDIVFGIGPAGTGKTYLA 36 >gnl|CDD|73295 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.. Length = 69 Score = 28.8 bits (64), Expect = 1.6 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 38 IVTLIGPNGSGKSTIAKLIT 57 I+ + G +GSGKST+AK + Sbjct: 1 IIAITGGSGSGKSTVAKKLA 20 >gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins. Length = 196 Score = 28.7 bits (65), Expect = 1.7 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Query: 38 IVTLIGPNGSGKST-IAKL 55 ++ L+G GSGK+T IAKL Sbjct: 3 VILLVGLQGSGKTTTIAKL 21 >gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]. Length = 218 Score = 28.7 bits (64), Expect = 1.7 Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62 I+ + G +GSGK+T+AK ++ + Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGV 34 >gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]. Length = 238 Score = 28.4 bits (63), Expect = 1.7 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68 V L+G + SGK+++ +LITG + T+ S++ Sbjct: 41 VLLVGLSDSGKTSLFTQLITGSHRGTVTSIE 71 >gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]. Length = 953 Score = 28.4 bits (63), Expect = 1.8 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80 ++ + L GP G+GK+ +AK + SVK P+L+ YV Q Sbjct: 702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK-GPELLNMYVGQ 748 >gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]. Length = 1141 Score = 28.3 bits (63), Expect = 1.8 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 32 TIKPNEIVT-LIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQLIVGYVPQKV 82 I P + T +IGPNGSGKS + I+ ++ K + V LI G +K Sbjct: 20 VIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKP 73 >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.. Length = 151 Score = 28.3 bits (63), Expect = 2.0 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 41 LIGPNGSGKSTIAKLI 56 L GP G+GK+T+A+ I Sbjct: 24 LYGPPGTGKTTLARAI 39 >gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate transport and metabolism]. Length = 191 Score = 28.4 bits (63), Expect = 2.0 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 29 INFTIKP-NEIVTLIGPNGSGKSTIAKLI 56 + T+ P ++ ++G +GSGKSTI K + Sbjct: 4 KHKTMGPFKYVIVVMGVSGSGKSTIGKAL 32 >gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter. Length = 370 Score = 28.1 bits (63), Expect = 2.0 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTI--AKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83 L +N+ ++P I + GP G GKS + L +I+P P+ + PQK Sbjct: 78 LPSLNYGLQPV-IGVVYGPTGCGKSQLLRNLLSCQLIQPI-------PETVFFITPQKDM 129 Query: 84 I 84 I Sbjct: 130 I 130 >gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]. Length = 845 Score = 28.0 bits (62), Expect = 2.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKST 51 + +I I+ N++V ++G GSGK+T Sbjct: 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTT 80 >gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]. Length = 208 Score = 27.9 bits (62), Expect = 2.5 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--RHP 71 + + G +G+GK+T A+L+ ++ V R P Sbjct: 5 FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREP 40 >gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]. Length = 388 Score = 28.0 bits (62), Expect = 2.5 Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56 IKP + + L GP G+GK+ +A+ + Sbjct: 163 IKPPKGLLLYGPPGTGKTLLARAV 186 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 27.9 bits (63), Expect = 2.7 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%) Query: 39 VTLIGPNGSGKSTIAKLI---TGIIKPTIGSVKR 69 + L+G +GSGK+T+A+ + TG I +GSV+ Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI-DRLGSVED 34 >gnl|CDD|33396 COG3596, COG3596, Predicted GTPase [General function prediction only]. Length = 296 Score = 27.6 bits (61), Expect = 2.8 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKS-TIAKLITGIIKPT 63 ++ + + + + L+ + T K V L+G G+GKS I L G +K Sbjct: 8 NNVLKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEV 67 >gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 500 Score = 27.6 bits (61), Expect = 2.8 Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 34 KPNEIVTLIGPNGSGKST 51 +P ++ + GP GSGK+T Sbjct: 256 RPQGLILVTGPTGSGKTT 273 >gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]. Length = 1294 Score = 27.6 bits (61), Expect = 3.1 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 5/29 (17%) Query: 39 VTLI-GPNGSGKSTIAKLI----TGIIKP 62 +TLI G NG+GK+TI + + TG + P Sbjct: 29 LTLIVGANGTGKTTIIECLKYATTGELPP 57 >gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated. Length = 638 Score = 27.7 bits (62), Expect = 3.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Query: 30 NFTIKPNEI---VTLIGPNGSGKSTIAKLITG 58 FT +I V L+GP G+GK+ +AK I G Sbjct: 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 >gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]. Length = 398 Score = 27.6 bits (61), Expect = 3.2 Identities = 8/25 (32%), Positives = 13/25 (52%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLIT 57 +V ++GP SGKST+ + Sbjct: 70 AGKVGVVMVVGPVDSGKSTLTTYLA 94 >gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]. Length = 191 Score = 27.4 bits (61), Expect = 3.2 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 ++ L GP+G GKST+ K + Sbjct: 6 LIVLSGPSGVGKSTLVKAL 24 >gnl|CDD|32375 COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]. Length = 555 Score = 27.6 bits (61), Expect = 3.3 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 165 LYELITSVRQSTGCGILL-ISHNLH---MVMASTDTVICL 200 Y L+ + ++ TG G+LL S N+H +V + D + Sbjct: 497 YYGLLRAFKERTGVGVLLNTSFNVHGEPIVCSPADAIRTF 536 >gnl|CDD|58497 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.. Length = 214 Score = 27.5 bits (61), Expect = 3.5 Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 + P +V LIG N G +T A+ I I + ++ Sbjct: 88 VNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREK 125 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 27.4 bits (60), Expect = 4.0 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 35 PNEIVTLIGPNGSGKSTIAK-LITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 P IV ++GP G+GKST+ + L+ K TI + R P +V +++T Sbjct: 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI-RGPITVVSGKTRRITF 117 >gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]. Length = 494 Score = 27.1 bits (59), Expect = 4.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLI 56 ++P + V L GP G+GK+ +AK + Sbjct: 270 KLGLRPPKGVLLYGPPGTGKTLLAKAV 296 >gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. Length = 1042 Score = 27.3 bits (60), Expect = 4.2 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 27/134 (20%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKLI-------TGIIKPTIGSVKRHPQLIVGYV 78 + I+ N++V ++G GSGK+T +A+ + G+I T Sbjct: 362 DQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCT--------------Q 407 Query: 79 PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLA 138 P++V +S+ + + M + D + R + + IK ++ G R L Sbjct: 408 PRRVA-----AISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLK 462 Query: 139 KALLRKPNLLVLDE 152 L K +++++DE Sbjct: 463 DRDLDKYSVIIMDE 476 >gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 1293 Score = 27.2 bits (60), Expect = 4.3 Identities = 8/12 (66%), Positives = 11/12 (91%) Query: 41 LIGPNGSGKSTI 52 ++GPNGSGKS + Sbjct: 113 IVGPNGSGKSNV 124 >gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 202 Score = 27.1 bits (60), Expect = 4.4 Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLI 56 + + ++ + GPN GKST + I Sbjct: 23 DINLGSGRLLLITGPNMGGKSTYLRSI 49 >gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]. Length = 187 Score = 27.2 bits (60), Expect = 4.4 Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPT 63 V ++G SGKST+ + I T Sbjct: 10 TVAILGGESSGKSTLVNKLANIFNTT 35 >gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 247 Score = 27.1 bits (60), Expect = 4.4 Identities = 9/12 (75%), Positives = 11/12 (91%) Query: 41 LIGPNGSGKSTI 52 +IGPNGSGKS + Sbjct: 27 IIGPNGSGKSNL 38 >gnl|CDD|33381 COG3581, COG3581, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 420 Score = 27.2 bits (60), Expect = 4.6 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI------CLNNRICYQGPPQTIKDN 216 S+ TG G L L ++ + D VI C+ N I +G + +K + Sbjct: 310 SLGNKTGEGWFLTGEMLELIESGVDNVICLQPFGCMPNHIVSKGMIKGLKRD 361 >gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.. Length = 264 Score = 27.1 bits (60), Expect = 4.6 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKST 51 ++ L +I + + KP+ I+ + GP GSGK+T Sbjct: 54 NQILDLEKLGLKPENLEIFRKL--LEKPHGIILVTGPTGSGKTT 95 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 27.2 bits (60), Expect = 4.7 Identities = 7/26 (26%), Positives = 13/26 (50%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST 51 L + ++ E++ L G GK+T Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTT 45 >gnl|CDD|114021 pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. Length = 198 Score = 27.0 bits (60), Expect = 4.8 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITG 58 K + ++ L G GSGKST K + G Sbjct: 49 CKFDHVLILQGAQGSGKSTFLKKLGG 74 >gnl|CDD|111445 pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. Length = 193 Score = 26.9 bits (60), Expect = 5.0 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 186 NLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIR 221 + +++ + DTV+ L RI G P+ ++ E +R Sbjct: 63 DNALIIGA-DTVVILGGRI--LGKPKDKEEAREMLR 95 >gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction only]. Length = 300 Score = 26.9 bits (59), Expect = 5.1 Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 IV + GP GSGKST++ LI Sbjct: 52 IVGISGPQGSGKSTLSALI 70 >gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]. Length = 435 Score = 26.9 bits (59), Expect = 5.2 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 22/115 (19%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----IGSVKRHPQLIVGYVPQKVTI 84 +N I P + V L GP G+GK+ A+ + IGS +L+ YV + + Sbjct: 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS-----ELVQKYVGEGARM 258 Query: 85 ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG--EFQRALL 137 L M ++ + D ++ IG D +GG E QR +L Sbjct: 259 VREL---------FEMARTKKACIIFFDEIDAIG--GARFDDGAGGDNEVQRTML 302 >gnl|CDD|38288 KOG3078, KOG3078, KOG3078, Adenylate kinase [Nucleotide transport and metabolism]. Length = 235 Score = 26.8 bits (59), Expect = 5.3 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 41 LIGPNGSGKSTIAKLIT 57 L+G GSGK T A +T Sbjct: 20 LLGAPGSGKGTQAPRLT 36 >gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 1856 Score = 26.9 bits (59), Expect = 5.4 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72 S +F ++ +L+ I ++ NE + L+G G GK+++ + + ++ + V Q Sbjct: 42 GSTFAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQ 101 Query: 73 -----LIVGYVPQKVTIENTLPLSLMR 94 L+ GY P V +LPLS Sbjct: 102 SDSSDLLGGYKP--VNDYLSLPLSKPF 126 >gnl|CDD|73035 cd03276, ABC_SMC6_euk, Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 198 Score = 26.7 bits (59), Expect = 5.4 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 I+L N H++ I F + N IV G NGSGKS I +T + Sbjct: 4 ITLKNFMCHRHL-----QIEFGPRVNFIV---GNNGSGKSAI---LTALT 42 >gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]. Length = 424 Score = 26.9 bits (59), Expect = 5.5 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78 N I+P + V + GP G+GK+ +A+ T + PQL+ ++ Sbjct: 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQMFI 246 >gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein. Length = 490 Score = 26.9 bits (59), Expect = 5.6 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 I+ L GP+G GKST K+++ + I Sbjct: 43 NKQLILLLTGPSGCGKSTTVKVLSKELGIEI 73 >gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function unknown]. Length = 374 Score = 26.5 bits (58), Expect = 5.9 Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 19/159 (11%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88 IN I + IGPN SGKST + + I S Y K E Sbjct: 14 INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEEYLQ 73 Query: 89 PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148 L L + + V + RV + + + SG E + + R+ Sbjct: 74 WLQL---------RAVNVVEKGFRRVFGLNLQDLTTRGASGEELILTVKHR---RERVKY 121 Query: 149 VLDEPLQGIDFP-------GELSLYELITSVRQSTGCGI 180 +L PL + F G ++Y L +R G Sbjct: 122 ILKWPLVSLKFEYLKAERRGPRNVYALFDYLRSRNLLGA 160 >gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]. Length = 197 Score = 26.7 bits (59), Expect = 5.9 Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 14 SNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIA 53 N +H + + + ++ G +GSGKSTIA Sbjct: 1 ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIA 40 >gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 693 Score = 26.8 bits (59), Expect = 6.1 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 31 FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78 F I P + V L GP G GK+ +AK + SVK P+L YV Sbjct: 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK-GPELFSKYV 509 >gnl|CDD|32910 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]. Length = 1480 Score = 26.6 bits (58), Expect = 6.2 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 38 IVTLIGPNGSGKS-TIAKLITGII 60 + TL G NG+GKS T+A +T +I Sbjct: 29 VTTLSGGNGAGKSTTMAAFVTALI 52 >gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein [Function unknown]. Length = 491 Score = 26.6 bits (58), Expect = 6.2 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 8 TPLISLSNTSFHKNGYKILQD-INFTIKPNEIVTLIGPNGSGKSTIAKLITG 58 TPLI N F+ N K+L +FT+ + ++G GSGKST+ L+ Sbjct: 165 TPLIV-DNGIFNDNARKLLHKTTDFTV-----IGVLGGQGSGKSTLLSLLAA 210 >gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop. Length = 123 Score = 26.5 bits (59), Expect = 6.5 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIK 61 K ++V L G G+GK+T + G+ K Sbjct: 13 KAGDVVLLSGDLGAGKTTFVR---GLAK 37 >gnl|CDD|35951 KOG0732, KOG0732, KOG0732, AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]. Length = 1080 Score = 26.5 bits (58), Expect = 6.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAK 54 NF I P V GP G+GK+ +A+ Sbjct: 293 NFNITPPRGVLFHGPPGTGKTLMAR 317 >gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]. Length = 796 Score = 26.5 bits (58), Expect = 7.1 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 30 NFTIKPNEIVTLI-GPNGSGKSTIAKLI 56 NF + + TLI GP G+GK+ + + Sbjct: 429 NFHVGEDVGHTLIIGPTGAGKTVLLSFL 456 >gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]. Length = 490 Score = 26.3 bits (58), Expect = 7.2 Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 41 LIGPNGSGKSTIAKLITGIIKP 62 L+GP G+GK+ +A + G++ P Sbjct: 203 LVGPPGTGKTMLASRLPGLLPP 224 >gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]. Length = 596 Score = 26.4 bits (58), Expect = 7.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 39 VTLIGPNGSGKSTIAKLITGI 59 V L+GP G+GK+ +AK + G Sbjct: 186 VLLVGPPGTGKTLLAKAVAGE 206 >gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 368 Score = 26.5 bits (58), Expect = 7.2 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78 V GP G+GK+ +AK + K + VK +LI +V Sbjct: 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKA-TELIGEHV 192 >gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 225 Score = 26.5 bits (59), Expect = 7.4 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIK 61 P +V ++GP G GK+T LI ++K Sbjct: 38 PPLVVAVVGPPGVGKTT---LIKSLVK 61 >gnl|CDD|30887 COG0541, Ffh, Signal recognition particle GTPase [Intracellular trafficking and secretion]. Length = 451 Score = 26.2 bits (58), Expect = 7.7 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55 ++N KP ++ ++G GSGK+T KL Sbjct: 91 SELNLAKKPPTVILMVGLQGSGKTTTAGKL 120 >gnl|CDD|113093 pfam04310, MukB, MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands). Length = 227 Score = 26.1 bits (57), Expect = 7.7 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Query: 36 NEIVTLIGPNGSGKS-TIAKLITGII 60 + TL G NG+GKS T+A IT +I Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFITALI 52 >gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]. Length = 444 Score = 26.3 bits (58), Expect = 7.7 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 + P I+ +IGP G GK+ IA+ + + V+ VGYV + V Sbjct: 48 VTPKNIL-MIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 >gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 375 Score = 26.4 bits (58), Expect = 8.0 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKST 51 +L+D+ + +V ++G GSGKST Sbjct: 118 VLKDL--ALAKRGLVIIVGATGSGKST 142 >gnl|CDD|34258 COG4639, COG4639, Predicted kinase [General function prediction only]. Length = 168 Score = 26.1 bits (57), Expect = 8.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Query: 38 IVTLIGPNGSGKSTIAK 54 +V L G +GSGKST AK Sbjct: 4 LVVLRGASGSGKSTFAK 20 >gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157 Score = 26.1 bits (58), Expect = 8.3 Identities = 10/16 (62%), Positives = 11/16 (68%) Query: 38 IVTLIGPNGSGKSTIA 53 V G +GSGKSTIA Sbjct: 4 TVWFTGLSGSGKSTIA 19 >gnl|CDD|48379 cd03115, SRP, The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.. Length = 173 Score = 26.2 bits (58), Expect = 8.3 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%) Query: 38 IVTLIGPNGSGKST-IAKL 55 ++ L+G G GK+T AKL Sbjct: 2 VILLVGLQGVGKTTTAAKL 20 >gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport, Cytoskeleton]. Length = 185 Score = 26.0 bits (57), Expect = 8.5 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Query: 39 VTLIGPNGSGKSTIAKLITGI----IKPTIGS 66 + ++G + SGK+TI K + G I PT+G Sbjct: 19 ILILGLDNSGKTTIVKKLLGEDTDTISPTLGF 50 >gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 276 Score = 26.3 bits (58), Expect = 8.5 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 18/71 (25%) Query: 125 KDLSGGEFQRALLA-KALL---RKPNLLVLDEPLQGIDFPGELS------LYELITSVRQ 174 K SGGE R +LA KA+L L+ DE GI GE++ L EL Sbjct: 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGIS--GEVAQAVGKKLKEL------ 220 Query: 175 STGCGILLISH 185 S +L I+H Sbjct: 221 SRSHQVLCITH 231 >gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 317 Score = 26.3 bits (59), Expect = 8.5 Identities = 9/14 (64%), Positives = 10/14 (71%) Query: 41 LIGPNGSGKSTIAK 54 L+G SGKSTI K Sbjct: 5 LLGAGESGKSTILK 18 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 26.0 bits (58), Expect = 8.6 Identities = 7/23 (30%), Positives = 11/23 (47%) Query: 36 NEIVTLIGPNGSGKSTIAKLITG 58 + L G +G GKST+ + Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLP 57 >gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 312 Score = 26.1 bits (57), Expect = 8.7 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 34/112 (30%) Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM 100 + G SGK+T+ + I P + VTIE+T L L Sbjct: 148 ICGGTASGKTTLLNALLDFIPP---------------EERIVTIEDTPELKLP------- 185 Query: 101 PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 ++ +Q++ R G +++D LL AL ++P+ +++ E Sbjct: 186 ---HENWVQLVTREGESGSSEVSLED---------LLRAALRQRPDYIIVGE 225 >gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.. Length = 187 Score = 26.0 bits (57), Expect = 8.7 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 38 IVTLIGPNGSGKSTIAKLITGII 60 IV + G SGK+T+AKL+ I+ Sbjct: 1 IVGISGVTNSGKTTLAKLLQRIL 23 >gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 196 Score = 26.2 bits (58), Expect = 9.1 Identities = 8/23 (34%), Positives = 15/23 (65%) Query: 38 IVTLIGPNGSGKSTIAKLITGII 60 I+ + G +G+GK+T+A+ I Sbjct: 1 IIGVAGSSGAGKTTVARTFVSIF 23 >gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Length = 165 Score = 26.1 bits (58), Expect = 9.3 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 39 VTLIGPNGSGKSTIAKLI 56 V L G GSGK+T+ + + Sbjct: 3 VILQGEAGSGKTTLLQKL 20 >gnl|CDD|35471 KOG0250, KOG0250, KOG0250, DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]. Length = 1074 Score = 26.0 bits (57), Expect = 9.3 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%) Query: 41 LIGPNGSGKSTIAKLITGII 60 ++G NGSGKS I +T + Sbjct: 67 IVGNNGSGKSAI---LTALT 83 >gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]. Length = 515 Score = 25.8 bits (56), Expect = 9.8 Identities = 8/14 (57%), Positives = 12/14 (85%) Query: 43 GPNGSGKSTIAKLI 56 GP G GK+TIA+++ Sbjct: 45 GPRGVGKTTIARIL 58 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 26.0 bits (57), Expect = 9.9 Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 +I L+G +G GKST+ + + G + Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEK 198 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0724 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,772,083 Number of extensions: 142603 Number of successful extensions: 1078 Number of sequences better than 10.0: 1 Number of HSP's gapped: 923 Number of HSP's successfully gapped: 352 Length of query: 240 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 149 Effective length of database: 4,297,318 Effective search space: 640300382 Effective search space used: 640300382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.4 bits)