RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (240 letters) >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 255 bits (654), Expect = 6e-69 Identities = 105/234 (44%), Positives = 162/234 (69%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 +T L+SL N S ++L D++ +KP +I+TL+GPNG+GKST+ +++ G++ P G Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60 Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD 126 +KR+ +L +GYVPQK+ ++ TLPL++ RF+ L + ++D+L L RV + ++ Sbjct: 61 IKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120 Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 LSGGE QR LLA+ALL +P LLVLDEP QG+D G+++LY+LI +R+ C +L++SH+ Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 Query: 187 LHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240 LH+VMA TD V+CLN+ IC G P+ + + E+I +FG R E L I+ H H+H Sbjct: 181 LHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNH 234 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 135 bits (342), Expect = 8e-33 Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 31 FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------RHPQLIVGYVPQK--- 81 + E++ L+GPNG+GK+T+ + I G+I P G+VK +GYVPQ+ Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60 Query: 82 -----VTIENTLPLSLMRFMTLSMPSSRDD---VLQILDRVNLIGKYNRNIKDLSGGEFQ 133 +++ +T+ + D V L RV L +R + +LSGG+ Q Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193 R L+A+AL +P++L+LDEP G+D P + L EL + + G IL+ +H+L MA+ Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQAMAT 179 Query: 194 TDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEIL 231 D V+ LN R+ G PQ ++D A ++ FG + L Sbjct: 180 CDRVVLLNGRVIADGTPQQLQDPAPWMTTFGVSDSSPL 217 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 108 bits (271), Expect = 2e-24 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 52/239 (21%) Query: 11 ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 I N SF G + L +++ TI+P E V +IG GSGKST+ KL+ G+ +PT GSV Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 Query: 69 R--------HPQLI---VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRD-DVLQI 110 P + +GYVPQ + +N + L P + D ++L+ Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN---------IALGAPYADDEEILRA 574 Query: 111 LDRVNL--------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 + + IG+ R+ LSGG+ Q LA+ALLR P +L+LDEP Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGERGRS---LSGGQRQAVALARALLRDPPILLLDEPTSA 631 Query: 157 IDFPGELSLYELITSVRQ-STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 +D E +++ G ++L++H + + D +I ++N RI GP + Sbjct: 632 MDNRSE---ERFKDRLKRWLAGKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQV 686 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 104 bits (262), Expect = 2e-23 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 32/218 (14%) Query: 11 ISLSNTSF-HKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +S+ N + G K L+ I+F ++ E + +IGP+GSGKST+A+LI GI PT GSV+ Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 Query: 69 ---------------RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILD 112 +H +GY+PQ V + T+ ++ RF + P + ++ Sbjct: 377 LDGADLKQWDRETFGKH----IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432 Query: 113 RVNLIGK----YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 LI + Y+ I LSGG+ QR LA+AL P L+VLDEP +D GE + Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 L I +++ G +++I+H ++ D ++ L + Sbjct: 493 LANAIKALKAR-GITVVVITHRPS-LLGCVDKILVLQD 528 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 102 bits (257), Expect = 6e-23 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 26/241 (10%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67 + LS S+ G I+ ++ T P + L+GPNGSGKST+ +L+ G ++P G+V Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61 Query: 68 --------KRHPQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD---VLQI 110 +R V V Q +T+ + + L + +L S D V + Sbjct: 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA 121 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 L R L +R++ LSGGE QR +A+AL ++P LL+LDEP +D +L E + Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL---ETLA 178 Query: 171 SVRQSTGCGILLIS--HNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRA 227 VR+ G+ +++ H+L++ + D V+ L+ R+ GPP+ + A ++G A Sbjct: 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDA 238 Query: 228 T 228 T Sbjct: 239 T 239 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 102 bits (256), Expect = 7e-23 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 20/216 (9%) Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------- 67 T +NG+ L+D +FT+ I L+G NGSGKST+ K + G ++ G + Sbjct: 13 TVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR 72 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSL-----------MRFMTLSMPSSRDDVLQILDRVNL 116 + + +V YVPQ ++ + P+ + M ++ + R V L RV++ Sbjct: 73 QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM 132 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 + +R I +LSGG+ +R LA+A+ ++ +++LDEP G+D E + L+ +R Sbjct: 133 VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE- 191 Query: 177 GCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT 212 G +L+ +HNL V D + + + GP +T Sbjct: 192 GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTET 227 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 102 bits (256), Expect = 8e-23 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 41/251 (16%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 PL+S+S G + ++N ++ EIV+LIGPNG+GK+T+ +TG KPT G++ Sbjct: 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62 Query: 68 KRHPQLIVGYVPQKV-------TIENTLPLSLMRFMT---------------------LS 99 Q I G ++ T ++ + L R MT L Sbjct: 63 LLRGQHIEGLPGHQIARMGVVRTFQH---VRLFREMTVIENLLVAQHQQLKTGLFSGLLK 119 Query: 100 MPSSR-------DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 P+ R D L+RV L+ NR +L+ G+ +R +A+ ++ +P +L+LDE Sbjct: 120 TPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179 Query: 153 PLQGIDFPGE-LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210 P G++ P E L ELI +R +LLI H++ +VM +D + +N G P Sbjct: 180 PAAGLN-PKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 Query: 211 QTIKDNAEYIR 221 + I++N + I+ Sbjct: 239 EEIRNNPDVIK 249 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 101 bits (254), Expect = 1e-22 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 28/223 (12%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74 NG + L++IN I P E V +IGP+G+GKST+ + I +++P+ GS+ I Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72 Query: 75 --------VGY-------VPQKVTIENTLP--LSLMRF--MTLSMPSSRDDV--LQILDR 113 +G + + +EN L L L S D L L+R Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER 132 Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173 V L K + LSGG+ QR +A+AL ++P+L++ DEP+ +D + + + + Sbjct: 133 VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN 192 Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 + G +++ H + + D ++ L I + G P + D Sbjct: 193 KEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD 235 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 100 bits (252), Expect = 2e-22 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 33/212 (15%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68 D +FT+ + + G +GSGK+T+ +LI G+ +P G + K Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74 Query: 69 RHPQLIVGYVPQKVTIENTLPL--SLMRFMTLSMPSSR----DDVLQILDRVNLIGKYNR 122 R +GYV Q+ + L + +L M + PS R + V+++L +L+G+ Sbjct: 75 RR----IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 LSGGE QR + +ALL P LL++DEPL +D P + + + + G IL Sbjct: 131 ---RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187 Query: 183 ISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 +SH+L V+ D V+ L + R+ GP + Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 97.1 bits (242), Expect = 3e-21 Identities = 56/213 (26%), Positives = 111/213 (52%), Gaps = 17/213 (7%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS-------VKRHP 71 +K + +NF ++ E+ +GPNG+GK+T +++T +++PT G+ V R P Sbjct: 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP 61 Query: 72 QLI---VGYVPQKVTIENTLP----LSLM-RFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 + + +G VPQ +++ L L +M R L + + ++L+ L +R Sbjct: 62 RKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP 121 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 + SGG +R +A +L+ +P++L LDEP G+D ++++ I ++++ G ILL Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT 180 Query: 184 SHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 +H + D + +++ RI +G P+ +K Sbjct: 181 THYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 97.1 bits (242), Expect = 3e-21 Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 14/195 (7%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------RHPQLIVGY 77 + +I+ T+ N + L+GPNG+GKST+ K+ITGI++PT G + R +G Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 Query: 78 VPQKVTIENTLPLS---LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134 + + + L + L +P SR + ++L+ V+L + K S G QR Sbjct: 75 LIESPPLYENLTARENLKVHTTLLGLPDSR--IDEVLNIVDLTNTGKKKAKQFSLGMKQR 132 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAST 194 +A ALL P LL+LDEP G+D G L ELI S + G ++L SH L V Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLA 191 Query: 195 DTV-ICLNNRICYQG 208 D + I + YQG Sbjct: 192 DHIGIISEGVLGYQG 206 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 97.0 bits (242), Expect = 3e-21 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 19/220 (8%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68 + ++ SF + L D++FT++P E V L+GPNG+GKST+ L+T + G + Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 Query: 69 -----RHPQLI---VGYVPQKVTIENTLPLSLMRFMT-------LSMPSSRDDVLQILDR 113 R P+ +G V Q+ T++ L LS+ + + LS +R+ + +L R Sbjct: 62 GHDLRRAPRAALARLGVVFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLAR 119 Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173 + L + + +++L+GG +R +A+ALL +P LL+LDEP G+D ++ + ++ Sbjct: 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI 213 + G +L +H + + A V+ R+ G + Sbjct: 180 RDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 95.9 bits (239), Expect = 7e-21 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 27/217 (12%) Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76 F N ++ ++N TIK +VTL+GP+G GK+T+ +L+ G+ KPT G + I G Sbjct: 15 RFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-----FIDG 67 Query: 77 YVPQKVTIENT-----------LP-LSL-------MRFMTLSMPSSRDDVLQILDRVNLI 117 +I+ P +SL ++ + + + V + L+ V+L Sbjct: 68 EDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA 127 Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 G +R + +SGG+ QR LA+AL+ KP +L+ DEPL +D S+ E I ++Q Sbjct: 128 GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187 Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 L ++H+ A +DTVI +N +I G PQ + Sbjct: 188 ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 95.6 bits (238), Expect = 9e-21 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 25/233 (10%) Query: 8 TPLISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 +I N SF L+D++F I + +++G NGSGKSTIAKL+ GI K G Sbjct: 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 Query: 66 SVKRHPQLI-----------VGYVPQKVTIENTLPLSLMRF--------MTLSMPSSRDD 106 + + Q I +G V Q +N S++++ + Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNP--DNQFVGSIVKYDVAFGLENHAVPYDEMHRR 122 Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 V + L +V+++ + + LSGG+ QR +A L P++++LDE +D +L Sbjct: 123 VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQ-GPPQTIKDNAE 218 +L+ V+ I+ I+H+L M + D VI +N Y+ G P I D+AE Sbjct: 183 DLVRKVKSEHNITIISITHDLSEAMEA-DHVIVMNKGTVYKEGTPTEIFDHAE 234 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 95.2 bits (237), Expect = 1e-20 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 16/203 (7%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ++ +S+ G L+DIN T++ E++ ++GP+G GK+T+ LI G + GS+ Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 Query: 70 HPQLIVGYVPQKVTI---ENTLP---------LSLMRFMTLSMPSSRDDVLQILDRVNLI 117 + + G ++ + E LP L + + + Q+L +V L Sbjct: 61 DGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVGLE 119 Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID-FPGELSLYELITSVRQST 176 G R I LSGG+ QR +A+AL P LL+LDEP +D F E + L+ + Q T Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE-QMQTLLLKLWQET 178 Query: 177 GCGILLISHNL-HMVMASTDTVI 198 G +LLI+H++ V +T+ V+ Sbjct: 179 GKQVLLITHDIEEAVFMATELVL 201 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 95.3 bits (237), Expect = 1e-20 Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 23/201 (11%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------------- 67 +L +++ +I+ E V L+G +G GKST+A+L+ G+ KP G+V Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85 Query: 68 -KRHPQLI----VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 +R QL+ V ++T+ + L +L + + ++LD V L + Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145 Query: 123 NI-KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 + + LSGG+ QR +A+AL KP L+VLDE + +D + + EL+ ++Q+ G L Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 Query: 182 LISHNLHMVMASTDTVICLNN 202 I+H+L +V + V ++ Sbjct: 206 FITHDLRLVQSFCQRVAVMDK 226 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 94.9 bits (236), Expect = 2e-20 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 24/227 (10%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 P+I +S+ S +L ++ +++ +V L+GPNG+GK+T+ + I G + PT G+V Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61 Query: 69 -----------RHPQLIVGYVPQKVTI------ENTLPLS----LMRFMTLSMPSSRDDV 107 R V VPQ ++ + + RF T + + R V Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAV 120 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 + ++R + +R + LSGGE QR LLA+AL + +L+LDEP +D ++ E Sbjct: 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213 L+ + G + H+L + D ++ L + R+ GPP + Sbjct: 181 LVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 94.8 bits (236), Expect = 2e-20 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 38/219 (17%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80 +L+ + FT+ P E+V L+GP+GSGKST+A L+ + +PT G V Q Y+ + Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---------------NLIGK----YN 121 +V + P+ S R+++ L + I + Y+ Sbjct: 556 QVALVGQEPVLFSG-------SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD 608 Query: 122 RNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 + + LSGG+ QR +A+AL+RKP +L+LDE +D E L E R Sbjct: 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES----RSRAS 664 Query: 178 CGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDN 216 +LLI+H L V + ++ + G + + ++ Sbjct: 665 RTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 94.5 bits (236), Expect = 2e-20 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 27/229 (11%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 ++ N S G +L D++ T++P E+V ++GPNG+GKST+ + ++G + P G V+ Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60 Query: 69 RHPQLIVGY-----------VPQKVTIENTLPLS-----LMRFMTLSMPSSRDD--VLQI 110 + + + + +PQ ++ + P + M + + DD V Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSL--SFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLR------KPNLLVLDEPLQGIDFPGELS 164 L +V+L R+ LSGGE QR LA+ L + P L+LDEP +D + Sbjct: 119 LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQT 212 + L + G ++++ H+L++ D ++ L+ R+ G P Sbjct: 179 VLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 94.0 bits (234), Expect = 3e-20 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 30/203 (14%) Query: 9 PLISLSNTSFHKNGYKI-LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-- 65 P + L + SF G L ++ + P E V ++GP+GSGKST+ L+TG++ P G Sbjct: 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 Query: 66 --------SVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVNL 116 S++ + + Q + +T ++ + L P ++ +++ L+RV L Sbjct: 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDT---TVRDNLRLGRPDATDEELWAALERVGL 449 Query: 117 IGKYNRNIKD------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 + R++ D LSGGE QR LA+ALL +L+LDEP + +D E Sbjct: 450 -ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE 508 Query: 165 LYELITSVRQSTGCGILLISHNL 187 L E + + +G +++I+H+L Sbjct: 509 LLEDLLAA--LSGKTVVVITHHL 529 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 93.9 bits (234), Expect = 3e-20 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 31/217 (14%) Query: 9 PLISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 P + S S G L+ ++FT+ P E V L+GP+G+GKST+ L+ G + PT GS Sbjct: 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378 Query: 67 VK-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRV 114 + + + +VPQ + ++ + L+ P +S ++ + L+R Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERA 435 Query: 115 NLI-------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 L + I + LSGG+ QR LA+A LR LL+LDEP +D E Sbjct: 436 GLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 + E + ++ Q G +LL++H L + D ++ L Sbjct: 496 LVTEALRALAQ--GRTVLLVTHRLA-LAERADRIVVL 529 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 93.7 bits (234), Expect = 3e-20 Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 4/123 (3%) Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS 91 I E++ ++GPNG GK+T AKL+ G++KP G V P+L + Y PQ + + + Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD--PELKISYKPQYIKPDYDGTVE 418 Query: 92 -LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150 L+R +T + SS +I+ + L ++N+KDLSGGE QR +A L R +L +L Sbjct: 419 DLLRSITDDLGSSYYKS-EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 Query: 151 DEP 153 DEP Sbjct: 478 DEP 480 Score = 67.1 bits (165), Expect = 4e-12 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 37/152 (24%) Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP-------------------- 71 K ++ ++GPNG GK+T K+++G + P +G + P Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 Query: 72 ----QLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121 ++ V + PQ KV L L R + ++++R+ L + Sbjct: 155 LYNGEIKVVHKPQYVDLIPKVFKGKVREL-------LKKVDERGKLDEVVERLGLENILD 207 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 R+I +LSGGE QR +A ALLR + DEP Sbjct: 208 RDISELSGGELQRVAIAAALLRDADFYFFDEP 239 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 93.1 bits (232), Expect = 6e-20 Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 19/230 (8%) Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 S++PL+ L S +G +++ +++ TI E +TL+GP+G GK+T+ +LI G Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRF--MT--------LSM---PSS--RD 105 P G + Q I + + NT+ S F MT L M P++ Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHV-NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP 123 Query: 106 DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 V++ L V L R LSGG+ QR +A+A++ KP +L+LDE L +D+ + Sbjct: 124 RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 Query: 166 -YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 EL R+ G + ++H+ + +D ++ + + RI G P+ I Sbjct: 184 QNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 92.9 bits (231), Expect = 7e-20 Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 36/215 (16%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT------- 63 I S+ G +IL+DI+ + I T++GP+G+GKST+ KLI +I PT Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63 Query: 64 ---------------IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DV 107 IG V + P L G T+++ + M + ++ DV Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEG------TVKDNIEYGPM------LKGEKNVDV 111 Query: 108 LQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 L V L +Y R++K+LSGGE QR +A+ L P +L+LDEP +D + Sbjct: 112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201 ELI ++ ++ I+HN+ D LN Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 92.5 bits (230), Expect = 8e-20 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 25/197 (12%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK----------RHPQL 73 L +++F + IV +GPNG+GKST K+ITG + P GSV+ + Q Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 Query: 74 IVGYVPQKVTIENTLPLSL-----MRFMT----LSMPSSRDDVLQILDRVNLIGKYNRNI 124 +GY+P+ N L L + ++F+ + + V ++++ V L + ++ I Sbjct: 76 NIGYLPE----HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI 131 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 LS G QR LA+AL+ P +L+LDEP G+D + + +I ++ + I+L + Sbjct: 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILST 189 Query: 185 HNLHMVMASTDTVICLN 201 H + V A D VI +N Sbjct: 190 HIMQEVEAICDRVIIIN 206 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 91.5 bits (227), Expect = 2e-19 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 18/191 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68 I L S ++ D++FTI E L+GPNG+GKSTIA+++ G+I P G + Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64 Query: 69 --------RHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV 114 R ++ +G VPQ + T+ L L R+ +S + +L+ Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFA 123 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 L K + + LSGG +R LA+AL+ P LL+LDEP G+D ++E + S+ Sbjct: 124 RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL-L 182 Query: 175 STGCGILLISH 185 + G ILL +H Sbjct: 183 ARGKTILLTTH 193 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 89.8 bits (223), Expect = 6e-19 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 18/201 (8%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV--- 82 L+ +N TI+ E ++LIG +G GKST+ LI+G+ +PT G V + I P ++ Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60 Query: 83 ---------TIENTLPLSLMRFM-TLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132 T+ + L++ R + LS R V + + V L ++ LSGG Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120 Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192 QR +A+AL +P +L+LDEP +D +L E + + + +L+++H++ + Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL 180 Query: 193 STDTVICLNNRICYQGPPQTI 213 +D V+ L N GP I Sbjct: 181 LSDRVVMLTN-----GPAANI 196 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 89.7 bits (223), Expect = 6e-19 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 27/238 (11%) Query: 8 TPLISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 + +I + N SF + L++++F I E V ++G NGSGKSTI+K++TG++KP G Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64 Query: 66 SVK-----------RHPQLIVGYVPQK-------VTIENTLPLSL--MRFMTLSMPSSRD 105 +K + + +G + Q T+E+ + L + M D Sbjct: 65 EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIID 124 Query: 106 DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 D+ + +V + ++ ++LSGG+ QR +A L P +++ DE +D G+ + Sbjct: 125 DLAK---KVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222 +++ +R++ ++ I+H++ + + D VI + ++ QG P+ I +N E + Sbjct: 182 KKIMVDLRKTRKKTLISITHDMDEAILA-DKVIVFSEGKLIAQGKPKEILNNKEILEK 238 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 89.7 bits (223), Expect = 6e-19 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 26/202 (12%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---- 67 LS H+ +L +++ ++K E V L+G +G GKST+A+L+ G+ P+ G+V Sbjct: 17 GLSGKHQHQ---TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73 Query: 68 --------------KRHPQLI----VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 +R Q++ + V + T+ + L ++L + Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE 133 Query: 110 ILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 +L V+L ++ LSGG+ QR LA+AL +P LL+LDE + +D + + L Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193 Query: 169 ITSVRQSTGCGILLISHNLHMV 190 + ++Q G L I+H+L +V Sbjct: 194 LKKLQQQFGTACLFITHDLRLV 215 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 89.2 bits (222), Expect = 8e-19 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 27/204 (13%) Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +I N S + G L D++ I+ E + L GP+G+GK+T+ KL+ G + P+ G V+ Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 Query: 69 ---------RHPQLI-----VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDD 106 R QL +G V P + EN LPL + + Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRR 117 Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 V L +V L K + + LSGGE QR +A+A++ P LL+ DEP +D + Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 Query: 167 ELITSVRQSTGCGILLISHNLHMV 190 +L+ + + G +++ +H+L +V Sbjct: 178 DLLKRLNKR-GTTVIVATHDLSLV 200 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 89.1 bits (221), Expect = 8e-19 Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 20/195 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 I N ++ ++F ++ E L+GPNG+GK+T +++ G+ P GS+ Sbjct: 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64 Query: 68 K----------RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 RH + VG VPQ EN L R+ LS ++R V + Sbjct: 65 SLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG--RYFGLSAAAARALVPPL 122 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 L+ L K + + +LSGG +R LA+AL+ P++LVLDEP G+D ++E + Sbjct: 123 LEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 Query: 171 SVRQSTGCGILLISH 185 S+ + G ILL +H Sbjct: 183 SL-LARGKTILLTTH 196 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 89.2 bits (222), Expect = 9e-19 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 35/213 (16%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------RHPQLIV--GY 77 ++ ++ EI+ L+GPNG+GKST+ + G++ P GS++ +L Y Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73 Query: 78 VPQKVTIENTLPLSLM---RFMTLSMPSSR-----DDVL-QILDRVNLIGKYNRNIKDLS 128 + Q+ T P M +++TL P L ++ + + L K R++ LS Sbjct: 74 LSQQQT-----PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128 Query: 129 GGEFQRALLAKALLR-----KPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 GGE+QR LA +L+ P LL+LDEP+ +D + +L L++ + Q G ++ Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVV 187 Query: 182 LISHNLHMVMASTDTVICLNNRICY-QGPPQTI 213 + SH+L+ + D V L G + Sbjct: 188 MSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 87.6 bits (217), Expect = 2e-18 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 16/190 (8%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68 I L+ S ++ ++FT+ E L+GPNG+GKSTIA++I G+ P G + Sbjct: 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVL 101 Query: 69 --------RHPQLIVGYVPQ--KVTIENTLPLSLM---RFMTLSMPSSRDDVLQILDRVN 115 R + +G VPQ + +E T+ +L+ R+ +S + +L+ Sbjct: 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 L K + + DLSGG +R LA+AL+ P LL+LDEP G+D ++E + S+ + Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL-LA 220 Query: 176 TGCGILLISH 185 G ILL +H Sbjct: 221 RGKTILLTTH 230 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 87.6 bits (217), Expect = 3e-18 Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 20/221 (9%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74 G ++++D++ T+ EIV L+GPNG+GK+T ++ GI+ G++ + I Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74 Query: 75 -----VGYVPQKVTIENTLPL--SLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNRN 123 +GY+PQ+ +I L + +LM + LS D ++++ ++ + Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM 134 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 + LSGGE +R +A+AL P ++LDEP G+D + + +I +R S G G+L+ Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLIT 193 Query: 184 SHNLHMVMASTD-TVICLNNRICYQGPPQTIKDNAEYIRLF 223 HN+ +A + I + G P I + R++ Sbjct: 194 DHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 87.4 bits (217), Expect = 3e-18 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 37/233 (15%) Query: 9 PLISLSNTSFHKNGYK-----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 +I + + SF Y L+D++F++ E V ++G NGSGKST+AKL+ G++ P Sbjct: 4 EIIRVEHISFR---YPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60 Query: 64 IGSVKRHPQLI-----------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRD 105 G++ ++ VG V Q T+++ + L + +P R+ Sbjct: 61 AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL---ENIGVP--RE 115 Query: 106 D----VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161 + V Q L +V + NR LSGG+ QR +A L +P++++LDE +D G Sbjct: 116 EMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 + E + +++ G +L I+H+L A D VI +N I +G P+ I Sbjct: 176 RREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 87.2 bits (217), Expect = 4e-18 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 33/221 (14%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 P++ L S +G+K L D++ + P E+ +IGPNG+GK+T+ +ITG +P GSV Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60 Query: 69 -------RHP-----QLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSR----------- 104 P + +G QK T+ EN L++ + L++P + Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFEN---LTVFENLELALPRDKSVFASLFFRLS 117 Query: 105 ----DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160 D + ++L+ + L + +R LS G+ Q + L++ P LL+LDEP+ G+ Sbjct: 118 AEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177 Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201 EL+ S+ ++++ H++ V + D V L+ Sbjct: 178 ETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLH 216 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 86.8 bits (216), Expect = 5e-18 Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 39/240 (16%) Query: 2 SNALSITPLISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59 S A + ++L+N SF +L+ ++ IK E V L+G G GKST+ +L+T Sbjct: 330 STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389 Query: 60 IKPTIGSVKRHPQLIVGY-----------VPQKVTIENTLPLSLMRFMTLSMPSSRDDVL 108 P G + + Q I Y V Q+V + + +L + L+ P++ D+ L Sbjct: 390 WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA---TLRDNLLLAAPNASDEAL 446 Query: 109 -QILDRVNL-------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154 ++L +V L +G+ R LSGGE +R +A+ALL LL+LDEP Sbjct: 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLLLDEPT 503 Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL--NNRICYQGPPQT 212 +G+D E + EL+ Q +L+I+H L + D IC+ N +I QG Q Sbjct: 504 EGLDAETERQILELLAEHAQ--NKTVLMITHRLTG-LEQFDR-ICVMDNGQIIEQGTHQE 559 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 86.1 bits (213), Expect = 7e-18 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 7/196 (3%) Query: 9 PLISLSNTSFHKNGYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 P+IS S+ SF G +L +++NF I + + ++GPNG GKSTI KLI+G ++P+ G+V Sbjct: 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI-LDRVNLIGKYN-RNIK 125 R ++ + Q L + + +M P + L+ L + G + + Sbjct: 567 FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 626 Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 LSGG+ R AK +KP++L+LDEP +D ++ LI + G G+L++SH Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALIQGLVLFQG-GVLMVSH 682 Query: 186 NLHMVMASTDTVICLN 201 + H++ S D + ++ Sbjct: 683 DEHLISGSVDELWVVS 698 Score = 36.8 bits (85), Expect = 0.005 Identities = 19/44 (43%), Positives = 25/44 (56%) Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 + K SGG R LA+AL +P+LL+LDEP +D L L Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL 383 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 86.2 bits (214), Expect = 8e-18 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 52/212 (24%) Query: 11 ISLSNTSFHKNGYKIL-----QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 + L N +F GY L ++ + T++P + V L+G +GSGKSTIAKL+ G+ +P G Sbjct: 478 VELRNITF---GYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 Query: 66 SV-------KRHPQLI----VGYVPQKV-----TIENTLPLSLMRFMTL---SMPSSRDD 106 + + P+ + V V Q + T+ + L TL ++P + D Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL--------TLWDPTIPDA--D 584 Query: 107 VLQ------ILDRVN-LIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155 +++ I D + G Y+ + +LSGG+ QR +A+AL+R P++L+LDE Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644 Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNL 187 +D E + + + R+ GC ++++H L Sbjct: 645 ALDPETEKIIDDNL---RRR-GCTCIIVAHRL 672 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 85.9 bits (213), Expect = 8e-18 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 18/202 (8%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 TPL+ L+ S +L ++ I + V ++G +G GKST+ +L+ G+ P+ G Sbjct: 11 TPLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-- 67 Query: 68 KRHPQLIVGYVPQKVTIENT---------LPL-SLMRFMTLSMPSS-RDDVLQILDRVNL 116 +L+ G P E+T LP ++ + L + RD LQ L V L Sbjct: 68 ----ELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGL 123 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 + N LSGG+ QR LA+AL+ +P LL+LDEPL +D + + +LI S+ Q Sbjct: 124 ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 Query: 177 GCGILLISHNLHMVMASTDTVI 198 G +LL++H++ +A D V+ Sbjct: 184 GFTVLLVTHDVSEAVAMADRVL 205 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 85.8 bits (213), Expect = 8e-18 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 36/191 (18%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------RHPQLI 74 ++L DIN I P EIV L GP+GSGK+T+ LI G+ GS+K +L+ Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 Query: 75 -----VGYVPQKVTIENTLPLSLMRFMT--------------LSMPSSRDDVLQILDRVN 115 +GY+ Q +L+ F+T LS +R+ +L+ V Sbjct: 79 QLRRNIGYIFQA--------HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG 130 Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 L + +LSGG+ QR +A+AL+ +P L++ DEP +D + EL+ + + Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 Query: 176 TGCGILLISHN 186 GC IL+++H+ Sbjct: 191 QGCTILIVTHD 201 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 85.5 bits (212), Expect = 1e-17 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 19/225 (8%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 P +S+ N + L+DI+ ++K E V L+GP+G GK+T+ ++I G+ + T G++ Sbjct: 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 Query: 69 RHPQLIVGYVPQK---------------VTIENTLPLSLM-RFMTLSMPSSRDDVLQILD 112 + + I PQK +T+ + + L R M + + R V ++LD Sbjct: 63 QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER--VAELLD 120 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 V L G + LSGG+ QR LA+AL P LL+LDEPL +D L I + Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 ++ G ++++H+ ++ D ++ +N+ I G PQ I + Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 85.2 bits (211), Expect = 2e-17 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 26/187 (13%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-----------KRH-PQL 73 L ++NF I E+V L+G +G+GKST KLI GI KPT G + R P L Sbjct: 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78 Query: 74 --IVGYVPQ-------KVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 +G V Q + +N PL R + + + + V L++V L GK + Sbjct: 79 RRHIGMVFQDHRLLSDRTVYDNVAFPL---RIIGVPPRDANERVSAALEKVGLEGKAHAL 135 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 LSGGE QR +A+A++ KP LL+ DEP +D + L + G +L+ Sbjct: 136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA 194 Query: 184 SHNLHMV 190 +H++++V Sbjct: 195 THDINLV 201 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 84.7 bits (210), Expect = 2e-17 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 41/238 (17%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67 I + T F K K L ++N I+ E V LIG GSGKST+ + + G++KPT G + Sbjct: 11 IYMEGTPFEK---KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIID 67 Query: 68 -------KRHPQLI---VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 K I VG V Q + TIE + + + LS ++ +I Sbjct: 68 GVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLS-----EE--EI 119 Query: 111 LDRV----NLIGKYNRNIKD-----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161 +RV N++G + KD LSGG+ +R +A + +P +L+LDEP G+D G Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAE 218 + I + + I+L+SH++ V D +I +N + QG P+ + E Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 84.5 bits (210), Expect = 2e-17 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 40/213 (18%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74 IL+ ++ + E+ ++G NG GK+T+ K + G++ GS++ + I Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 Query: 75 --VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSR--DDVLQ---ILDRVNLIGKYN 121 + YVPQ ++T+E L L L S + D++ + +L + Sbjct: 75 AGIAYVPQGREIFPRLTVEENL---LTGLAALPRRSRKIPDEIYELFPVLKEML-----G 126 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV----RQSTG 177 R DLSGG+ Q+ +A+AL+ +P LL+LDEP +GI P S+ + I V R G Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ-P---SIIKDIGRVIRRLRAEGG 182 Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGP 209 ILL+ L D + R+ G Sbjct: 183 MAILLVEQYLDFARELADRYYVMERGRVVASGA 215 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 84.3 bits (209), Expect = 2e-17 Identities = 51/191 (26%), Positives = 100/191 (52%), Gaps = 26/191 (13%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74 K ++L+ ++ +I EIV ++G +GSGKST+ L+ G+ PT G V + Q + Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74 Query: 75 ----------VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 +G++ P +EN +PL + + S+ +++ ++L++V L Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK---SVKEAKERAYEMLEKVGL 131 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 + N +LSGGE QR +A+AL+ +P+L++ DEP +D +++L+ + + Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191 Query: 177 GCGILLISHNL 187 L+++H+L Sbjct: 192 NTSFLVVTHDL 202 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 83.4 bits (207), Expect = 4e-17 Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 54/192 (28%) Query: 22 GYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80 G K+L D++F + P IV +IGPNG+GKST+ ++ITG +P G++K + + YV Q Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ 392 Query: 81 KVTIENTLPLSLMRFMTLSMPSSRD----------------DVLQILDR-VN---LIGKY 120 SRD D++Q+ R V +G++ Sbjct: 393 ----------------------SRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRF 430 Query: 121 N-------RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173 N + + LSGGE R LAK L N+L+LDEP +D +L E + Sbjct: 431 NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF- 489 Query: 174 QSTGCGILLISH 185 GC ++ISH Sbjct: 490 --AGC-AVVISH 498 Score = 71.5 bits (176), Expect = 2e-13 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 40/170 (23%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83 +IL+DI+ + P + ++G NG+GKST+ +++ G+ K G + P + VGY+PQ+ Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 Query: 84 IENTLPL-------------SLMRFMTLSM----PSSRDDVL--------QILDRVNLIG 118 ++ T + +L RF +S P + D L +I+D + Sbjct: 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWD 138 Query: 119 KYNR---------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 + ++ LSGGE +R L + LL KP++L+LDEP Sbjct: 139 LDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 83.3 bits (206), Expect = 5e-17 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 23/225 (10%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I ++N S ++ L D+N + +V L+GP+GSGKST+ ++I G+ +P G ++ + Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60 Query: 71 PQLI---------VGYVPQK------VTIENTLPLSLMRFMTLSMPSS---RDDVLQILD 112 Q +G+V Q +T+ + + L + + V ++L+ Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL----EIRKHPKAKIKARVEELLE 116 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 V L G +R LSGG+ QR LA+AL +P +L+LDEP +D L + + Sbjct: 117 LVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216 + ++H+ M D ++ ++N +I G P + D+ Sbjct: 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 82.5 bits (204), Expect = 9e-17 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 20/214 (9%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------- 68 + + L +INF N + +IGPNG+GKST+ + GI+KPT GSV Sbjct: 13 YSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN 72 Query: 69 -RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 R + VG V Q T+E + + + L + V L + L Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELR 131 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 +R LSGGE +R +A + +P +LVLDEP G+D G L + + + ++ G + Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 + +H L +V D + ++ RI G + I Sbjct: 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 82.5 bits (204), Expect = 1e-16 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 37/221 (16%) Query: 10 LISLSNTSFHKNG---YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 +I + N +F L D++F +K E +++IG NGSGKST +LI G+++ G Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63 Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSR-------DDVL----------- 108 + +I G +T EN + M P ++ DDV Sbjct: 64 I-----IIDG---DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHE 115 Query: 109 QILDRVN----LIGKYN---RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161 ++ +RVN L+G + R LSGG+ QR +A A+ +P +++LDE +D G Sbjct: 116 EMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 L L + I +R ++ I+H+L V A +D V+ + N Sbjct: 176 RLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 81.6 bits (202), Expect = 1e-16 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 38/227 (16%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----TIGSVK---------RHPQL 73 QD+N ++K E++ L+G +GSGKS I G++ P T G + Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62 Query: 74 IVGYVPQK--------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIK 125 + + Q T+ N +L LS +R +L+ L+ V L + + Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLS-KQARALILEALEAVGL-----PDPE 116 Query: 126 --------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 LSGG QR ++A ALL +P L+ DEP +D + + +L+ +RQ G Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176 Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN--AEYIR 221 GILLI+H+L +V D V +++ RI +G + I N E R Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 81.5 bits (202), Expect = 2e-16 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 61/204 (29%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72 + N ++ +G ++++D + ++ + + LIGPNG GK+T+ KL+ G ++ G + + Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTK 381 Query: 73 LIVGYV--------PQKVTIENT----------------------LPLSLMRFMTLSMPS 102 L V Y P+K ++N R MT P Sbjct: 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT---P- 437 Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG- 161 +K LSGGE R LLA+ L+ NLL+LDEP +D Sbjct: 438 ---------------------VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 Query: 162 ELSLYELITSVRQSTGCGILLISH 185 EL L EL+ S Q T +LL+SH Sbjct: 477 EL-LEELLDSY-QGT---VLLVSH 495 Score = 48.8 bits (117), Expect = 1e-06 Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58 LIS+ + +L + I+ NE V L+G NG+GKST+ K++ G Sbjct: 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51 Score = 39.2 bits (92), Expect = 9e-04 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 LSGG ++A L +AL+ P++L+LDEP +D L + + + S I+ ISH Sbjct: 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGS----IIFISH 211 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 81.7 bits (202), Expect = 2e-16 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 26/243 (10%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74 +G + L+ INF + E+V L+GPNG+GKST+ GI+KPT G V + I Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72 Query: 75 -------VGYVPQKV-------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 VG V Q T+E + + + LS V + L V + G Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN-LGLSKEEVEKRVKEALKAVGMEGFE 131 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 N+ LSGG+ +R +A L KP ++VLDEP G+D G + +L+ + + G I Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITI 190 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR---LFGTRATEILAIHNH 236 ++ +H++ +V D V +++ +I +G P+ + + E IR L R ++ I N Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLPRVAHLIEILNK 250 Query: 237 KHD 239 + + Sbjct: 251 EDN 253 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 81.3 bits (201), Expect = 2e-16 Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 26/212 (12%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74 L D+N TI+ IG GSGKSTI +L+ G+ PT GSV+ LI Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 Query: 75 ----VGYV---PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI-LDRVNLIG----KYNR 122 VG V P+ E T+ L + F + S+++ + +++ L+G + + Sbjct: 83 IRKKVGLVFQFPESQLFEETV-LKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 N +LSGG+ +R +A L +P +LVLDEP G+D G L L + QS G I+L Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVL 200 Query: 183 ISHNLHMVMASTDTVICLN-NRICYQGPPQTI 213 ++H + V D V L ++ G P+ I Sbjct: 201 VTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 80.9 bits (200), Expect = 3e-16 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 34/174 (19%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I ++N ++L DI+ I ++V L+GP+GSGK+T+ ++I G+ T G ++ H Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62 Query: 71 PQLI---------VGYVPQKVTIENTLPLSLMRFMT--------LSM------PSS---R 104 + VG+V Q +L R MT L++ P++ + Sbjct: 63 GTDVSRLHARDRKVGFVFQH--------YALFRHMTVFDNIAFGLTVLPRRERPNAAAIK 114 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 V Q+L+ V L +R LSGG+ QR LA+AL +P +L+LDEP +D Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 79.6 bits (197), Expect = 6e-16 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 5/133 (3%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 + +++N ++ E + +IG NG GK+T+ + + G ++P G+VK +GY Q Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAY 393 Query: 85 ENTLPLSLMRFMTLSMPSSRDD--VLQILDRVNLIGK--YNRNIKDLSGGEFQRALLAKA 140 + L+L +M+ D+ V L R+ L + +++K LSGGE R L K Sbjct: 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL-LFSQDDIKKSVKVLSGGEKGRMLFGKL 452 Query: 141 LLRKPNLLVLDEP 153 +++KPN+LV+DEP Sbjct: 453 MMQKPNVLVMDEP 465 Score = 40.6 bits (96), Expect = 4e-04 Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80 LIG NG GKST K++ G ++P+ G+V P +G + Q Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71 Score = 36.8 bits (86), Expect = 0.005 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 10/68 (14%) Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH---MV 190 R LLA+AL P++L+LDEP +D + E + + R ST +++ISH+ H V Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDI-NTIRWLEDVLNERNST---MIIISHDRHFLNSV 218 Query: 191 ---MASTD 195 MA D Sbjct: 219 CTHMADLD 226 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 79.6 bits (197), Expect = 7e-16 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 25/204 (12%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK-------- 81 + T++ E V ++GP+G+GKST+ LI G + P GS+ + Q P + Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 Query: 82 -------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134 +T+ + L L + L+ + R+ + I ++ + R LSGG+ QR Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLN-AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPG----ELSLYELITSVRQSTGCGILLISHNLHMV 190 LA+ L+R+ +L+LDEP +D P L+L + RQ T +L++SH+L Sbjct: 138 VALARCLVREQPILLLDEPFSALD-PALRQEMLTLVSQVCQERQLT---LLMVSHSLEDA 193 Query: 191 MA-STDTVICLNNRICYQGPPQTI 213 + +++ + RI + GP + Sbjct: 194 ARIAPRSLVVADGRIAWDGPTDEL 217 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 79.5 bits (196), Expect = 8e-16 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 22/233 (9%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74 + +G L+ IN IK E+ ++G NG+GKST+ + + GI+KP+ G + + I Sbjct: 15 YSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR 74 Query: 75 ---------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIG 118 VG V Q ++ + + + L R V L R + Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIEH 133 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 ++ LS G+ +R +A L+ +P +LVLDEP G+D G + +L+ +++ G Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193 Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRATEI 230 I++ +H++ +V D V + R+ QG P+ + E +R R I Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRI 246 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 79.1 bits (195), Expect = 8e-16 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 25/226 (11%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74 G K + D + I EI ++G +GSGKST +++ +I+PT G + + I Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64 Query: 75 --------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 +G V Q+ TI L + ++ L++L V L Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLG-PELLGWPEQERKEKALELLKLVGLEEYE 123 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 +R +LSGG QR LA+AL +P++L++DE +D S+ + + ++ + I Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223 + I+H+L + D ++ + I G P I N EY+ F Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 79.0 bits (195), Expect = 1e-15 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 22/186 (11%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74 G ++L+ +NF + E++ L+G NG+GKST+ + G+++P G+V + + Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62 Query: 75 -------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 VG V Q ++ + + + LS V + L V G Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLR 121 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 R LSGGE +R +A A+ +P++L+LDEP G+D G + ++ +R G + Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTV 180 Query: 181 LLISHN 186 ++ +H+ Sbjct: 181 VISTHD 186 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 78.7 bits (194), Expect = 1e-15 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 37/234 (15%) Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV 75 T K G L +I+F ++ V L+G GSGKST+ + ++KP+ G++ I Sbjct: 16 TPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT-----IA 67 Query: 76 GY-----------------------VPQKVTIENTLPLSLM---RFMTLSMPSSRDDVLQ 109 GY P+ ENT+ + + S +++ L+ Sbjct: 68 GYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALK 127 Query: 110 ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 L +V L +++ +LSGG+ +R +A + +P +L LDEP G+D G + +L Sbjct: 128 WLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL 187 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 Q G ++L++HN+ V D V+ L + ++ P+ I + E+++ Sbjct: 188 FKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWLK 240 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 78.1 bits (193), Expect = 2e-15 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 36/238 (15%) Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74 T F + L D+N +I V +IG GSGKST+ + + G+++PT G+V ++I Sbjct: 15 KTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71 Query: 75 ---------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQ--- 109 VG V Q + T+E + M F S +D Q Sbjct: 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGV-----SEEDAKQKAR 126 Query: 110 -ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 +++ V L + R+ +LSGG+ +R +A L +P +LVLDEP G+D G + E Sbjct: 127 EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224 + + + G +L++H++ D ++ ++ + QG P+ I + + + G Sbjct: 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIG 244 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 77.9 bits (192), Expect = 2e-15 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 21/191 (10%) Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQL-IVGYVPQK------VTIE 85 L+GP+G GK+T+ +L+ G +P GS+ P L + V Q +T+E Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60 Query: 86 NTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRK 144 + L MR + + R VL+ L V L +R LSGG+ QR LA+AL+ K Sbjct: 61 ENVAFGLKMRKVPRAEIKPR--VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK 118 Query: 145 PNLLVLDEPLQGIDFP-GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN- 202 P +L+LDEPL +D + EL T Q G + ++H+ M +D + + Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVTHDQEEAMTMSDRIAIMRKG 177 Query: 203 RICYQGPPQTI 213 +I G P+ I Sbjct: 178 KIAQIGTPEEI 188 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 77.8 bits (192), Expect = 2e-15 Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 41/236 (17%) Query: 8 TPLISLSNTS--FHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--K 61 PL+++ N S F + ++ D++ I+ E + L+G +GSGKS A I ++ Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62 Query: 62 PTI---GSVKRHPQLIVGYVPQKV-----------------------TIENTLP--LSLM 93 P + G ++ H + ++ Q + T+E L LSL Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122 Query: 94 RFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLV 149 R M ++R ++L LDRV I + + + D LSGGE QR ++A ALL +P LL+ Sbjct: 123 RGM--RREAARGEILNCLDRVG-IRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 Query: 150 LDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRIC 205 DEP +D + + +L+ ++Q G+L I+HNL +V D V + N C Sbjct: 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 Score = 64.0 bits (156), Expect = 3e-11 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 36/219 (16%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 ++++I+FT++P E + L+G +GSGKST + +I + G + Q + +++ Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQL-- 357 Query: 85 ENTLPLSLMRFMTLSMPSS----RDDVLQILD---RV-----NLIGKYNRNIK------- 125 LP+ + P+S R +VLQI++ RV + + + I Sbjct: 358 ---LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL 414 Query: 126 ----------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 + SGG+ QR +A+AL+ KP+L++LDEP +D + + L+ S++Q Sbjct: 415 DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 Query: 176 TGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213 L ISH+LH+V A VI L + QG + + Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 77.9 bits (193), Expect = 2e-15 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 50/160 (31%) Query: 22 GYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80 G ++L D++F++ P IV +IGPNG+GKST+ K+ITG +P G++K + + YV Q Sbjct: 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQ 394 Query: 81 KVTIENTLPLSLMRFMTLSMPSSRD----------------DVLQILDR-VN---LIGKY 120 SRD D++++ +R + +G++ Sbjct: 395 ----------------------SRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF 432 Query: 121 N-------RNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 N + + LSGGE R LAK L + N+L+LDEP Sbjct: 433 NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 Score = 51.3 bits (124), Expect = 2e-07 Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY 77 +IL+DI+ + P + ++G NG+GKST+ +++ G+ K G + P + VGY Sbjct: 15 VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGY 74 Query: 78 VPQ 80 +PQ Sbjct: 75 LPQ 77 Score = 44.3 bits (106), Expect = 3e-05 Identities = 16/30 (53%), Positives = 22/30 (73%) Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 + LSGGE +R L + LL KP++L+LDEP Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEP 190 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 77.1 bits (190), Expect = 3e-15 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 29/227 (12%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 +L N SF G +L ++ T ++ LIG NGSGKST+ K++ P+ G + Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 Query: 72 QLI-----------VGYVPQKV------TIENTLPL-------SLMRFMTLSMPSSRDDV 107 Q + V Y+PQ++ T+ + + +L RF + R+ V Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA----ADREKV 128 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 + + V L +R + LSGGE QRA +A + + L+LDEP +D ++ + Sbjct: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 L+ + Q G ++ + H+++M D ++ L + QG P + Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 77.3 bits (191), Expect = 4e-15 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 22/162 (13%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72 L N S IL D+N TI+ ++ +IG +GSGKST+ +I + K G V + + Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60 Query: 73 LI---------------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQIL 111 +GY+ Q T+E L L L ++ LS R+ + L Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL-KYKKLSKKEKREKKKEAL 119 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 ++V L K + I +LSGGE QR LA+A+L+ P L++ DEP Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 77.1 bits (190), Expect = 4e-15 Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 21/228 (9%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-- 67 L+ + SF + I +I+ T+ +I ++GP+G GK+T+ +LI G I P G + Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 Query: 68 -----------------KRHPQLI-VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 KR L G + + + + + L L P V+ Sbjct: 67 DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMM 126 Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L+ V L G +LSGG +RA LA+A+ +P+L++ DEP G D L +LI Sbjct: 127 KLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186 Query: 170 TSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTIKDN 216 + + + G +++SH++ V++ D I + +I G Q ++ N Sbjct: 187 SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 76.2 bits (188), Expect = 7e-15 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 41/230 (17%) Query: 11 ISLSNTSF--HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 I + +F +G IL D++ I+P E V ++GP+GSGKST+ +L+ G P GSV Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 Query: 69 RHPQ----LIVGYVPQK--VTIENT--LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 Q L V V ++ V ++N + S+ + P + D+ + L Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGL---- 567 Query: 121 NRNIKD---------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 +I+ LSGG+ QR L+A+AL+RKP +L+ DE +D Sbjct: 568 AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD------- 620 Query: 166 YELITSVRQSTG---CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211 V +S ++I+H L + + D + L+ R+ QG Sbjct: 621 NRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYD 669 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 75.5 bits (186), Expect = 1e-14 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 +PL+ L N + KIL +I+F+++ E + GP+G GKST+ K++ +I PT G++ Sbjct: 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64 Query: 68 KRHPQLIVGYVP----QKV------------TIENTLPLS-LMRFMTLSMPSSRDDVLQI 110 + I P Q+V T+ + L +R DD Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD---- 120 Query: 111 LDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L+R L +NI +LSGGE QR L + L P +L+LDE +D + ++ E+I Sbjct: 121 LERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICL 200 + +L ++H+ + D VI L Sbjct: 181 HRYVREQNIAVLWVTHDKDEI-NHADKVITL 210 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 75.6 bits (186), Expect = 1e-14 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 26/223 (11%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--------TIGSVKRHPQLI-- 74 L DI+F+I LIG NGSGKSTI+KLI G++ P T+ + + + Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 Query: 75 ----VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 VG V Q T+ + + L + P V +L V ++ + Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSE 140 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 +LSGG+ QR +A L +P +++LDE +D G+ + +LI +++ ++ I Sbjct: 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200 Query: 184 SHNL-HMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224 +H++ MA D V+ L++ ++ QG P I E ++ G Sbjct: 201 THDIDEANMA--DQVLVLDDGKLLAQGSPVEIFSKVEMLKEIG 241 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 75.1 bits (184), Expect = 1e-14 Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 31/218 (14%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK----- 61 + P I ++N SF+ + KIL+ ++ I +++ +IGP+G GKST K + + + Sbjct: 4 LIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63 Query: 62 PTIGSVKRHPQLI------VGYVPQKVTI----ENTLPLSL-------MRFMTLSMPSSR 104 G V+ Q I + + ++V++ N P+S+ ++ + Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123 Query: 105 DDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 DD+++ + D + K +++ DLSGG+ QR +A+AL KP +L++DEP G+ Sbjct: 124 DDIVESALKDADLWDEIK--HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 D + + LI S+R + ++++SHNLH V +D Sbjct: 182 DPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 75.1 bits (185), Expect = 1e-14 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 31/238 (13%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG---- 65 +I N S H ++L +I+ I E+V +IGP+GSGKST+ + I + + T G Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 Query: 66 ---SVK------RHPQLIVGYV-------PQKVTIENTL--PLSLMRFMTLSMPSSRDDV 107 V R + G V P +EN + PL R S + Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL---RVRGASKEEAEKQA 117 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 ++L +V L + + +LSGG+ QR +A+AL KP L++ DEP +D P EL +E Sbjct: 118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD-P-ELR-HE 174 Query: 168 LITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222 ++ ++ G +++++H + +I ++ RI G PQ + N RL Sbjct: 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 74.7 bits (184), Expect = 2e-14 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 25/216 (11%) Query: 22 GY---KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY- 77 GY +IL D++ ++ +I LIGPNG GKST+ K ++ P G+V + I Sbjct: 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS 70 Query: 78 ----------------VPQKVTIENTLPLSLMRFMTLSMPSSRDD---VLQILDRVNLIG 118 P+ +T+ + +++L S +D V Q +++ + Sbjct: 71 SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH 130 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 +R + DLSGG+ QRA LA L + +++LDEP +D ++ L L+ + G Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GK 189 Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 ++ + H+L+ D ++ L N + QG P+ + Sbjct: 190 TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 74.5 bits (183), Expect = 2e-14 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 ++TPL+ + N + +G + D++ TI EI L+G +G GKST+ +++ G +PT G Sbjct: 15 ALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74 Query: 66 SVKRHPQLIVGYVPQK---------------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 + + P + +T+E + L + L V ++ Sbjct: 75 QIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ-DKLPKAEIASRVNEM 133 Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 L V++ R LSGG+ QR LA++L ++P LL+LDEP+ +D Sbjct: 134 LGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 74.4 bits (183), Expect = 3e-14 Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 25/218 (11%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 TP IS++ L+ +N T+ P EI L+G NG+GKST+ K+++GI +PT G+ Sbjct: 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT 61 Query: 67 V------------KRHPQLIVGYVPQKVTIENTLP----LSLMRFMT--------LSMPS 102 + K QL +G + Q++++ + L L + R +T + Sbjct: 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121 Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 R +L RV L + + +LS Q +AK L+ ++++DEP + Sbjct: 122 MRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV 181 Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 L+ ++ +R G I+ ISH L + D + Sbjct: 182 DYLFLIMNQLR-KEGTAIVYISHKLAEIRRICDRYTVM 218 Score = 55.2 bits (133), Expect = 2e-08 Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 33/206 (16%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74 K ++DI+F++ EI+ G GSG++ + + G+ K G ++ + + I Sbjct: 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336 Query: 75 ---VGYVP---------------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 + Y+ Q + I +L + + + D+ ++ L Sbjct: 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK-GAMGLFHEVDEQRTAENQREL 395 Query: 117 IG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 + N+NI +LSGG Q+ L++K L P +++ DEP +GID + +Y+++ + Sbjct: 396 LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 Query: 173 RQSTGCGILLISHNLHMVMASTDTVI 198 G IL++S L ++ D + Sbjct: 456 ADD-GKVILMVSSELPEIITVCDRIA 480 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 74.3 bits (183), Expect = 3e-14 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 37/182 (20%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----- 62 P I L+N N IL ++++ + P E ++GPNG+GKST+ LITG P Sbjct: 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSN 316 Query: 63 -------------TIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS---------- 99 TI +K+H +GYV + ++ + S+ R + LS Sbjct: 317 DLTLFGRRRGSGETIWDIKKH----IGYVSSSLHLDYRVSTSV-RNVILSGFFDSIGIYQ 371 Query: 100 MPSSRDDVL--QILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 S R L Q LD + + + + LS G+ + AL+ +AL++ P LL+LDEPLQG Sbjct: 372 AVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 Query: 157 ID 158 +D Sbjct: 432 LD 433 Score = 54.6 bits (132), Expect = 2e-08 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 37/201 (18%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 + +S +F + K LQ + T+ + +G NGSGKS +A+ + G + G + Sbjct: 2 SSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61 Query: 69 ---RHPQLIVGYVPQKVTIE-----NTLPLSLMRFMTLSMPSSRDD----VLQIL----- 111 H + QK+ + NT LS DD +I+ Sbjct: 62 SQFSHITRLSFEQLQKLVSDEWQRNNTDMLS----------PGEDDTGRTTAEIIQDEVK 111 Query: 112 --DRVNLIGKY-------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162 R + + +R K LS GE ++ LL +AL+ +P+LL+LDEP G+D Sbjct: 112 DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171 Query: 163 LSLYELITSVRQSTGCGILLI 183 L EL+ S+ QS G ++L+ Sbjct: 172 QQLAELLASLHQS-GITLVLV 191 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 73.9 bits (182), Expect = 3e-14 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 24/208 (11%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 PL+ + S +G ++L+ I+FT+ E+ L+G NG+GKST+ K+I GI+ P G++ Sbjct: 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68 Query: 68 KRH--------P----QLIVGYVPQKVTIENTLP-LSLMRFMTLSMPSSRDD---VLQIL 111 + P QL + VPQ+ + P LS+ + +P + + Q+L Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLL---FPNLSVKENILFGLPKRQASMQKMKQLL 125 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 + + + L + Q + + L+R +L+LDEP + P E L + Sbjct: 126 AALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT-PAETE--RLFSR 182 Query: 172 VR--QSTGCGILLISHNLHMVMASTDTV 197 +R + G GI+ ISH L + D + Sbjct: 183 IRELLAQGVGIVFISHKLPEIRQLADRI 210 Score = 65.5 bits (160), Expect = 1e-11 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 43/203 (21%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENT 87 +I+ ++ EI+ L G G+G++ +A+ + G+ G + + + I + Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST-AQRLARG 339 Query: 88 L----------------PLS------LMRFMTLSMPSSRDDVLQILDRVNLIGKYNR--N 123 L PL+ + +R++ +L+R Y R N Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN--AVLER------YRRALN 391 Query: 124 IK---------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 IK LSGG Q+ L+AK L P LL++DEP +G+D +Y+LI S+ Sbjct: 392 IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451 Query: 175 STGCGILLISHNLHMVMASTDTV 197 +L IS +L + D V Sbjct: 452 Q-NVAVLFISSDLEEIEQMADRV 473 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 73.7 bits (181), Expect = 4e-14 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 33/238 (13%) Query: 9 PLISLSNTSFH-----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 P+I + N S + K + +++ +K EI ++G +G+GK+T++K+I G+++PT Sbjct: 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337 Query: 64 IGSV------------KRHPQL------IVGYVPQKVTI--ENTLPLSLMRFMTLSMPS- 102 G V K P +G + Q+ + T+ +L + L +P Sbjct: 338 SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 Query: 103 -SRDDVLQILDRVNLIGKYNRNIKD-----LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 +R + L V + I D LS GE R LA+ L+++P +++LDEP Sbjct: 398 LARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213 +D ++ + I R+ +++SH++ V+ D + + +I G P+ I Sbjct: 458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 Score = 59.8 bits (145), Expect = 6e-10 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 53/256 (20%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVK 68 I + N + +G ++L++I+FTI+ E++ ++G +G+GKS + ++ G+ +PT G + Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 Query: 69 RHPQLI--VGYV--PQKV-----TIENTLPLSLMRFMTLSMPSSR--------------- 104 H L GYV P KV TL + F LS R Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120 Query: 105 --------DDVLQ------------------ILDRVNLIGKYNRNIKDLSGGEFQRALLA 138 D+VL+ +++ V L + +DLSGGE QR +LA Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180 Query: 139 KALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 + L ++P L + DEP +D ++ + +++G ++L SH ++ +D I Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 Query: 199 CLNN-RICYQGPPQTI 213 L N I +G P + Sbjct: 241 WLENGEIKEEGTPDEV 256 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 73.7 bits (181), Expect = 4e-14 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK-------- 81 + + EIV ++GP+G+GKST+ LI G I+P GS+K + Q G P + Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 Query: 82 -------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134 +T+ + L L + L+ ++ V+ +V + +R + LSGG+ QR Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAST 194 LA+ L+R +L+LDEP +D + L+ + +L+++H+L A Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196 Query: 195 DTVICLNN-RICYQG 208 + ++ +I Sbjct: 197 SQIAVVSQGKIKVVS 211 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 73.3 bits (180), Expect = 5e-14 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 28/189 (14%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------------- 67 +L +++F+I E++ ++G +GSGKST+ L+ G+ PT G V Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 Query: 68 KRHPQLIVGY-----VPQKVTIEN-TLPLSLMRFMTLSMPS-SRDDVLQILDRVNLIGKY 120 R+ +L Y +P +EN +PL + P+ L++L V L + Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPL----LIGKKKPAEINSRALEMLAAVGLEHRA 139 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 N +LSGGE QR +A+AL+ P L++ DEP +D S+++L+ + + G Sbjct: 140 NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAF 199 Query: 181 LLISHNLHM 189 L+++H+L + Sbjct: 200 LVVTHDLQL 208 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 73.4 bits (180), Expect = 5e-14 Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 26/203 (12%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-------SVKRHPQLI 74 G + LQ + F ++P E+ L G +G+GKST+ KLI GI +P+ G + R Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73 Query: 75 VGYVPQKVTI---ENTLPLSLMRFMTLSMP-----SSRDD----VLQILDRVNLIGKYNR 122 V ++ +++ + ++ L + + +++P +S DD V LD+V L+ K Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID---FPGELSLYELITSVRQSTGCG 179 LSGGE QR +A+A++ KP +L+ DEP +D G L L+E V G Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV----GVT 189 Query: 180 ILLISHNLHMVMASTDTVICLNN 202 +L+ +H++ ++ + ++ L++ Sbjct: 190 VLMATHDIGLISRRSYRMLTLSD 212 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 73.2 bits (179), Expect = 5e-14 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 26/222 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------------- 68 + L DI+ +K LIG GSGKST+ + + G+++PT G V Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 Query: 69 ---RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQIL-DRVNLIGK----Y 120 R +V P+ E T+ L + F + ++ +I +++ ++G + Sbjct: 80 KPVRKKVGVVFQFPESQLFEETV-LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW 138 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 ++ +LSGG+ +R +A L +P +LVLDEP G+D + + +L S+ Q +G + Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTV 197 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 +L++H + V D V L I G P + ++++ Sbjct: 198 VLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 73.2 bits (180), Expect = 5e-14 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 27/225 (12%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74 G IL DI+ TIK N T++G +GSGKST+AKL+ G + G + + + Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545 Query: 75 ----VGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-NLIGKYNRNI 124 + Y+PQ+ +I L L ++ + ++ +I D + N+ Y + Sbjct: 546 LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 + +SGG+ QR LA+ALL +L+LDE +D E + + +++ T I Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKT---I 662 Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGP-PQTIKDNAEYIRLF 223 + ++H L V +D +I L++ +I QG + + N Y L Sbjct: 663 IFVAHRLS-VAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 72.9 bits (179), Expect = 6e-14 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 39/238 (16%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT-------GIIK-- 61 + S+ + +L +NF++ E V LIGP+GSGKSTI +++ G I+ Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 Query: 62 ------------PTIGSVKRHPQLI---VGYV-------PQKVTIENTLPLSLMRFMTLS 99 P + + ++H + + +G V P K ++N + + + + ++ Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDN-VTEAPVLVLGMA 119 Query: 100 MPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + +++LD V L K + LSGG+ QR +A+AL +P +++ DE +D Sbjct: 120 RAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD- 178 Query: 160 PGELSLYELITSVRQ---STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213 EL + E++ +R+ +LL++H + D V + RI QG P I Sbjct: 179 -PEL-VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 73.1 bits (180), Expect = 7e-14 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 24/214 (11%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP---- 79 K L ++FT++ + + ++G +G GKST+A+L+T I PT G + Q ++ P Sbjct: 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQK 88 Query: 80 ---QKV---------------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-Y 120 QK+ + L L+ +LS R+ L ++ +V L + Y Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY 148 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 +R SGG+ QR +A+AL+ P+++V DEP+ +D + + L+ ++Q G Sbjct: 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSY 208 Query: 181 LLISHNLHMVMASTDTVICLN-NRICYQGPPQTI 213 + ISH+L +V D V+ + R +G + I Sbjct: 209 VFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 72.7 bits (178), Expect = 8e-14 Identities = 57/247 (23%), Positives = 114/247 (46%), Gaps = 43/247 (17%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK--PTIGS---- 66 L+ T F+++ + L ++ I E+V L+GP+GSGKST+ + ++G+I + GS Sbjct: 10 LAKT-FNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL 66 Query: 67 ----VKRHPQLI---------VGYVPQKVTIENTLPL----------------SLMRFMT 97 V+R +L GY+ Q+ + N L + + + T Sbjct: 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT 126 Query: 98 LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 + LQ L RV ++ ++ + LSGG+ QR +A+AL+++ +++ DEP+ + Sbjct: 127 ---REQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216 D + + + + Q+ G +++ H + + + ++ L + Y G Q DN Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF-DN 242 Query: 217 AEYIRLF 223 + L+ Sbjct: 243 ERFDHLY 249 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 72.4 bits (178), Expect = 1e-13 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 12/177 (6%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------KR 69 + + + ++FT+ E + + GPNG GK+T+ +++ G+++P G V + Sbjct: 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRD 69 Query: 70 HPQLIVGYVPQKVTIENTL-PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128 P + Y+ ++ L L + F ++ + L V L G + LS Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLS 129 Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 G+ +R LA+ L + L +LDEP +D G L L+ + G +LL +H Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTH 185 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 72.4 bits (178), Expect = 1e-13 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 42/244 (17%) Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 I +F + L +N T++P E V L+GP+G+GKST+ +L+ P G + Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 Query: 68 --------KRHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-- 114 + P + + VPQ + + +R+ P + D+ ++ R Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRY---GRPDATDEEVEAAARAAH 454 Query: 115 --NLIGKYNRNI--------KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 I LSGG+ QR +A+A+L+ +L+LDE +D E Sbjct: 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-- 512 Query: 165 LYELITSVRQ-----STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAE 218 V+Q G L+I+H L V+ + V+ RI QG I Sbjct: 513 -----QLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 Query: 219 YIRL 222 Y RL Sbjct: 568 YARL 571 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 72.0 bits (177), Expect = 1e-13 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 23/171 (13%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG----- 65 I L+ + ++ L DI E + L+GP+G+GKS++ +++ + P G Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 66 ------SVKRHPQLI------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDV 107 S + I VG V Q+ +T++ L + R + LS + Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 ++L+R+ L +R LSGG+ QR +A+AL+ +P +L+ DEP +D Sbjct: 123 EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 72.2 bits (177), Expect = 1e-13 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 29/219 (13%) Query: 10 LISLSNTS--FHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 +I LSN + FH+ I L +++ + +I +IG +G+GKST+ + + + +PT G Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60 Query: 66 SV------------------KRHPQLIVGY---VPQKVTIEN-TLPLSLMRFMTLSMPSS 103 SV +R +I + + + N LPL L Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEI 117 Query: 104 RDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 + V ++L V L K++ +LSGG+ QR +A+AL P +L+ DE +D Sbjct: 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 S+ EL+ + + G ILLI+H + +V D V ++N Sbjct: 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 72.1 bits (177), Expect = 1e-13 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 45/236 (19%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------------ 68 +G +L I+ +KP E+V +IGP+GSGK+T+ + I + +P G+++ Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73 Query: 69 -------RHPQLIVGYV-------PQKVTIENTL--PLSLMRFMTLSMPSSRDDVL---- 108 R + VG+V P + +EN + P+ + +++ Sbjct: 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG-------EPKEEATARAR 126 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 ++L +V L GK + LSGG+ QR +A+AL +P +++ DEP +D P EL + E+ Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD-P-EL-VGEV 183 Query: 169 ITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 + ++RQ +++++H + D I ++ RI QGP + + + + R Sbjct: 184 LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPR 239 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 71.8 bits (177), Expect = 2e-13 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ++ N + ++ + ++FT+ E+V + GPNG+GK+++ +++ G+ +P G V Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 Query: 70 HPQLI-------------VGYVPQKVTIENTL-PLSLMRF-MTLSMPSSRDDVLQILDRV 114 + I +G+ P I+ L L +RF L P + + + L +V Sbjct: 61 QGEPIRRQRDEYHQDLLYLGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEALAQV 117 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 L G + ++ LS G+ +R LA+ L + L +LDEP ID Sbjct: 118 GLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 71.2 bits (174), Expect = 2e-13 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%) Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67 +I L N S+ + +G L++IN IK E + +IG NGSGKST+A + G+++P G V Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 Query: 68 ---------KRHPQL--IVGYVPQKV-------TIENTLPLSLMRFMTLSMPSS--RDDV 107 + + +VG V Q T+E L L +P R V Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP---ENLCLPPIEIRKRV 117 Query: 108 LQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166 + L + L KY +R+ K LSGG+ Q LA L +P L+ DE +D +++ Sbjct: 118 DRALAEIGL-EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176 Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI 213 E I + + G I+ I+HNL + + ++ +I +G P+ + Sbjct: 177 ERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 71.0 bits (174), Expect = 2e-13 Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 22/206 (10%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS--VKRHPQLIV 75 F + + ++ ++FT++ + + +IG NGSGKST+AK++ G+I+PT G + HP L Sbjct: 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP-LHF 79 Query: 76 G---YVPQKV---------------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 G Y Q++ I L L L +++ L +V L+ Sbjct: 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139 Query: 118 GKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 + + L+ G+ QR LA+AL+ +P +++ DE L +D L L+ +++ Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ 199 Query: 177 GCGILLISHNLHMVMASTDTVICLNN 202 G + ++ +L M+ +D V+ ++ Sbjct: 200 GISYIYVTQHLGMMKHISDQVLVMHQ 225 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 70.4 bits (172), Expect = 4e-13 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%) Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK---- 61 + P I + + SF+ N K ++ I+ I N++ +IGP+G GKST K + I + Sbjct: 3 QLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP 62 Query: 62 -PTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRF----MTLSMPSS 103 G V Q I +G V Q+ N P+S+ + +S Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR---PNPFPMSIYENVAYGVRISAKLP 119 Query: 104 RDDVLQILDRV--------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155 + D+ +I++ + K N++ LSGG+ QR +A+AL KP +L++DEP Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 +D + + ELI S+R I +++HN+ +D Sbjct: 180 ALDPIATMKVEELIHSLRSEL--TIAIVTHNMQQATRVSD 217 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 70.4 bits (172), Expect = 4e-13 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 26/223 (11%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS---------------- 66 +K L + + T K N++ +IG GSGKST+ +L G+I G Sbjct: 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 Query: 67 -VKRHPQLI--VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL----QILDRVNLIGK 119 VKR + I V P+ + T+ + F +++ ++ + ++L V L Sbjct: 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIA-FGPVNLGENKQEAYKKVPELLKLVQLPED 142 Query: 120 Y-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 Y R+ +LSGG+ +R LA + N LVLDEP G+D GE L + + Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202 Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYI 220 I++++HN+ V+ D VI ++ ++ G P I N E + Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 70.2 bits (172), Expect = 5e-13 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%) Query: 11 ISLSNTSF--HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 I+ N F + ++L ++N IKP E + ++GP+GSGKST+ KL+ + P G V Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV- 514 Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-------SSRDDVLQ---------ILD 112 L+ G V + P L R M + + S RD++ ++ Sbjct: 515 ----LVDG-----VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIH 565 Query: 113 RVNLIGK----------YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 L G YN + + LSGG+ QR +A+AL+ P +L+ DE +D Sbjct: 566 AAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208 + E + + + G +++I+H L V A ++ +I G Sbjct: 626 YESEALIMRNMREI--CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 70.0 bits (171), Expect = 5e-13 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 22/225 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--TIGSV- 67 I + + +L D++ I+ E++ LIG +G GK+T+ + I G +K G + Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65 Query: 68 ------------KRHPQLIV---GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112 KR L+ P + +E+ + L R + + V L Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPH-LKVEDNVAFGL-RAQKMPKADIAERVADALK 123 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 V L LSGG QR +A+A+ +P++L+LDEPL +D ++ E I ++ Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 Query: 173 -RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 + IL ++H+ + D + + R+ G PQ + D Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 69.7 bits (171), Expect = 6e-13 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 20/208 (9%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 ++L N + I +DIN I E V +GP+G GKST+ ++I G+ T G + Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63 Query: 71 PQLI---------VGYVPQKVTIENTLP-LSLMRFMTLSMPSSRDDVLQILDRVNLIGK- 119 + + VG V Q + P LS+ M+ + + +I RVN + + Sbjct: 64 EKRMNDVPPAERGVGMVFQSYAL---YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120 Query: 120 ------YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173 +R K LSGG+ QR + + L+ +P++ +LDEPL +D + + I+ + Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 Query: 174 QSTGCGILLISHNLHMVMASTDTVICLN 201 + G ++ ++H+ M D ++ L+ Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLD 208 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 69.5 bits (170), Expect = 7e-13 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 17/210 (8%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 ++S S H + L +++ I EIVTLIG NG+GK+T+ + G + T G + Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63 Query: 69 RHPQLIVGYVPQKVTIENT--LPLSLMRF--MT----LSMP---SSRDDVLQILDRV--- 114 + I + K+ E +P F MT L+M + RD + + V Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL 123 Query: 115 --NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 L + + +SGGE Q + +AL+ +P LL+LDEP G+ +++ I + Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183 Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN 202 R+ G I L+ N + + D L N Sbjct: 184 REQ-GMTIFLVEQNANQALKLADRGYVLEN 212 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 68.9 bits (168), Expect = 1e-12 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 21/229 (9%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI-------- 74 Y + +++ I +IGPNG GKST+ + ++ ++ P G V + I Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 Query: 75 ---VGYVPQKVTIENTLPLSLM----RF-----MTLSMPSSRDDVLQILDRVNLIGKYNR 122 +G + Q T + + + R+ T + V + + + ++ Sbjct: 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 ++ LSGG+ QRA +A L ++ +++LDEP +D ++ L EL++ + + G + Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199 Query: 183 ISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAEYIRLFGTRATEI 230 + H+L+ +I L +I QG P+ I R++G R I Sbjct: 200 VLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMII 248 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 69.1 bits (169), Expect = 1e-12 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 38/238 (15%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----------IGSVKRH 70 N L +I++T + N+I +IG +GSGKST+ G+IK IG K + Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 Query: 71 PQLIVGYVPQKVT--------------------IENTLPLSLMRFMTLSMPSSRDDVLQI 110 +LI +K+ ++T+ +M F +++ + + ++ Sbjct: 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIM-FGPVALGVKKSEAKKL 155 Query: 111 ----LDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 L+++ L Y R+ LSGG+ +R +A L +P +L+ DEP G+D GE + Sbjct: 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215 Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222 +LI + + + +I+H + V+ D VI ++ +I G P I + I Sbjct: 216 MQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 68.9 bits (168), Expect = 1e-12 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 35/238 (14%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI---------- 56 +T L+S + + + + ++++N ++ + LIGP+G GK+T + I Sbjct: 1 MTLLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60 Query: 57 --TG--------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL--SLMRFMTLSMPSSR 104 TG I P + V + VG V QK T+ + +++ + L+ R Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRR--VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR 118 Query: 105 DDVLQILDRVNLIGKYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 D ++++ +R +KD LSGG+ QR +A+AL +P +L++DEP Sbjct: 119 DHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTI 213 +D + +L+T +++ T I++++HN+H +DT L + GP + Sbjct: 179 LDPASTARIEDLMTDLKKVT--TIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 67.4 bits (164), Expect = 3e-12 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 33/218 (15%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85 L ++F+I E V++IG NGSGKST A+LI G+ + G VK I G + +T E Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK-----IDG---ELLTAE 74 Query: 86 NTLPLSLMRFMTLSMPSS---------------------RDDVLQILDR----VNLIGKY 120 N L M P + R+++++ +D VN++ Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK 134 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 R LSGG+ QR +A + +P +++LDE +D G + +I +++ + Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194 Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAE 218 L I+H+L +S ++ I + P + +E Sbjct: 195 LSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 67.6 bits (166), Expect = 3e-12 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 38/201 (18%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68 +N T+ I + G +G+GK+++ I+G+ +P G + K Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 Query: 69 RHPQLIVGYVPQKV------TIENTLPLSLMRF-MTLSMPSSRDDVLQILDRVNLIGKYN 121 R +GYV Q + L R+ M SM + D ++ +L L+ +Y Sbjct: 76 RR----IGYVFQDARLFPHYKVRGNL-----RYGMAKSMVAQFDKIVALLGIEPLLDRYP 126 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 LSGGE QR + +ALL P LL++DEPL +D P + L + + + IL Sbjct: 127 G---SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183 Query: 182 LISHNLHMVMASTDTVICLNN 202 +SH+L ++ D V+ L Sbjct: 184 YVSHSLDEILRLADRVVVLEQ 204 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 67.1 bits (164), Expect = 3e-12 Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 35/216 (16%) Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68 I + N SF +++ +LQ+IN ++ V L+G GSGKST+A L+ G T G ++ Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 Query: 69 --------RHPQLI--VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-- 116 H L V V Q + L + + +TL S + V Q L+ V L Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVV---LADTFLANVTLGRDISEEQVWQALETVQLAE 457 Query: 117 ------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 +G+ N LS G+ Q LA+ L++ P +L+LDE ID E + Sbjct: 458 LARSLPDGLYTPLGEQGNN---LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200 + + + +VR+ T +++I+H L ++ + DT++ L Sbjct: 515 IQQALAAVREHT--TLVVIAHRLSTIVEA-DTILVL 547 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 67.1 bits (164), Expect = 4e-12 Identities = 48/226 (21%), Positives = 105/226 (46%), Gaps = 31/226 (13%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------------- 68 ++ + D+N + + ++G GSGKST+ + I ++KPT G+V Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79 Query: 69 -RHPQLIVGYV---PQKVTIENTLPLSLM---RFMTLSMPSSRDDVLQILDRVNLIGKYN 121 R + +G V P+ E+T+ ++ + +++ ++ ++L + ++ Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG----FS 135 Query: 122 RNIKDLS-----GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 R++ S GG+ ++ + L P+++VLDEP G+D + + L+ S++ Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195 Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 I+L+SH+++ V D VI + I Q P+ + + + + Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLA 241 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 67.0 bits (164), Expect = 4e-12 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 54/246 (21%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---------KRHPQLI 74 K L +++ I E + +IG GSGK+T + + ++ P G++ K+ + Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 Query: 75 --------------------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMP 101 VG V Q + TIE + F +SM Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII-----FGPVSMG 135 Query: 102 SSRDDVLQ----ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 S+++ + ++ V L Y R+ +LSGG+ +R LA L +P+ LV DEP G Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 +D G + E+ ++ + G I+L++H+L V+ T I + +I G I Sbjct: 196 LDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 Query: 216 NAEYIR 221 + +++ Sbjct: 255 DNKFLI 260 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 67.0 bits (163), Expect = 5e-12 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 27/223 (12%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67 ++D + I+ EI ++G +GSGKST+ +L+ +I+PT G V Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103 Query: 68 KRHPQLIV----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123 +R +V +P ++NT M ++ R+ L L +V L + Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTA--FGMELAGINAEERREKALDALRQVGLENYAHSY 161 Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 +LSGG QR LA+AL P++L++DE +D + + + ++ I+ I Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221 Query: 184 SHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNA--EYIRLF 223 SH+L M D + I N + G P I +N +Y+R F Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 66.8 bits (163), Expect = 5e-12 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 42/182 (23%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--------------KPTIGSVKRH 70 IL + P EI+ ++GP+GSGKST+ + G I KPT +KR Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141 Query: 71 PQLIVGYVPQK------VTIENTLPL-SLMRFMTLSMPSSRDDVLQILDRV--------- 114 G+V Q +T+ TL SL+R L ++ + + + + V Sbjct: 142 ----TGFVTQDDILYPHLTVRETLVFCSLLR---LPKSLTKQEKILVAESVISELGLTKC 194 Query: 115 --NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 +IG N I+ +SGGE +R +A +L P+LL+LDEP G+D L + S+ Sbjct: 195 ENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252 Query: 173 RQ 174 Q Sbjct: 253 AQ 254 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 66.7 bits (163), Expect = 6e-12 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 44/230 (19%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK----------------- 68 L D+N +K E + ++G NGSGKSTIAK + ++ P+ G V Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85 Query: 69 ------RHP--QLIVGYVPQKVTI--ENTLPLSLMRFMTLSMPSS--RDDVLQILDRVNL 116 ++P Q++ V + V EN L +P R+ V + L +V + Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPEN-----------LGIPPEEIRERVDESLKKVGM 134 Query: 117 IGKYNRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 +Y R+ LSGG+ QR +A L +P ++ DEP +D G + I + + Sbjct: 135 Y-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193 Query: 176 TGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224 G I+LI+H + D +I +++ ++ +G P+ I E ++ G Sbjct: 194 YGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIG 242 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 65.8 bits (161), Expect = 9e-12 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 42/238 (17%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKP 62 I + N + + L++IN I N++ LIGP+G GKST+ + L+ G+ Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV--R 58 Query: 63 TIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 G V Q I VG V QK N P+S+ + + Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK---PNPFPMSIYDNIAYGPRLHGIKDKK 115 Query: 110 ILDRV---NLIG---------KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 LD + +L + + + LSGG+ QR +A+AL +P +L+LDEP + Sbjct: 116 ELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175 Query: 158 DFPGELSLYELITSVRQS-TGCGILLISHNLHMVMASTDTVI-CLNNRICYQGPPQTI 213 D + ELI +++ T I++++HN+ +D + + GP + I Sbjct: 176 DPIATGKIEELIQELKKKYT---IVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 65.9 bits (161), Expect = 9e-12 Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 45/233 (19%) Query: 10 LISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-- 65 + N +F L I+ I+P E V L+G +GSGKST+ LI +P G Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 Query: 66 -------------SVKRHPQLIVGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDV 107 S++R V V Q V TI N + + R ++ Sbjct: 390 LLDGHDLADYTLASLRRQ----VALVSQDVVLFNDTIANNIAYGRTE------QADRAEI 439 Query: 108 LQILDRVNLIGKYNR-----------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 + L ++ N LSGG+ QR +A+ALL+ +L+LDE Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP 209 +D E + + + Q G L+I+H L + + V+ + RI +G Sbjct: 500 LDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 65.5 bits (159), Expect = 1e-11 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 29/229 (12%) Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 M S + ++S + N IL+DI I N I ++GP+GSGKST+ K++ +I Sbjct: 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI 60 Query: 61 KPTIGSVKRHPQLI-----------------VGYVPQK------VTIENTLPLSLMRFMT 97 + +K +++ VG V Q+ ++I + + L Sbjct: 61 EIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI 120 Query: 98 LSMPSSRDDVLQILDRVNL----IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 + V + L +V L + N LSGG+ QR +A+AL KP +L++DEP Sbjct: 121 KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 ID ++ +LIT ++ I+++SHN V D V L N Sbjct: 181 TSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYN 227 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 65.5 bits (160), Expect = 1e-11 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 34/240 (14%) Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 M N + + L +K+G K L+ ++ +I L+GPNG+GKST+ + GI Sbjct: 1 MDNIIEVEDL-----HFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55 Query: 61 KPTIGSVKRHPQLI-----------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPS 102 P G VK + + VG V Q T+ + + F ++M Sbjct: 56 LPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVA-----FGPVNMGL 110 Query: 103 SRDDVLQ----ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 +D+V + L V + ++ LS G+ +R +A L P+++VLDEP+ +D Sbjct: 111 DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170 Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA 217 G+ +L E++ + G +++ +H++ + D VI L R+ +G + D Sbjct: 171 PRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 64.8 bits (158), Expect = 2e-11 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 20/197 (10%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 PL+ + S IL I + P + L+G NG+GKST+ KL+ G + P G + Sbjct: 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMR-----FMTLSMPSSRDDVLQILDRVNLIG---- 118 + +GY Q L +R L+ + ++ ++ D + G Sbjct: 370 GLAKGIKLGYFAQH-------QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD 422 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 K + SGGE R +LA + ++PNLL+LDEP +D +L E + + Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA--- 479 Query: 179 GILLISHNLHMVMASTD 195 ++++SH+ H++ ++TD Sbjct: 480 -LVVVSHDRHLLRSTTD 495 Score = 43.6 bits (103), Expect = 5e-05 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 42/197 (21%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 +L + TI P + V L+G NG GKST+ L+ I GS + +V Q+ Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP- 74 Query: 85 ENTLPLSLMRFM------------TLSMPSSRDDVLQI------LDRVN----------- 115 LP + ++ L + R+D I LD ++ Sbjct: 75 --ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132 Query: 116 LIG------KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L G + R + D SGG R LA+AL+ + +LL+LDEP +D + L + + Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192 Query: 170 TSVRQSTGCGILLISHN 186 S + + ++LISH+ Sbjct: 193 KSYQGT----LILISHD 205 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 64.8 bits (158), Expect = 2e-11 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 24/184 (13%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74 IL + +K E + LIG +GSGKST+ ++ G+ + G V Q + Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 Query: 75 -----VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 VG+V P +EN +L+R S SR+ +L+++ L + + Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGE--SSRQSRNGAKALLEQLGLGKRLDH 142 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 LSGGE QR LA+A +P++L DEP +D + +L+ S+ + G ++L Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 Query: 183 ISHN 186 ++H+ Sbjct: 203 VTHD 206 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 64.5 bits (157), Expect = 2e-11 Identities = 55/248 (22%), Positives = 91/248 (36%), Gaps = 44/248 (17%) Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV- 78 + IL+D++ I+P + L+G NG+GKST+ K + G + G + G V Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVT 67 Query: 79 -----------PQKVTIENTLPLSLMRFMTLSM---------PSSR----------DDVL 108 P+ + LP + S P +R + Sbjct: 68 LNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKAL---------LRKPNLLVLDEPLQGIDF 159 Q L R++ LSGGE R A+ L + P L+LDEP +D Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE 218 + L + + + + G+L I H+ ++ D + L + I G P + A Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAH 247 Query: 219 YIRLFGTR 226 R +G Sbjct: 248 IARCYGFA 255 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 64.6 bits (158), Expect = 2e-11 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 55/210 (26%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--GSVK---------- 68 +IL+ +N T+K EI ++GPNGSGKST++K I G + G++ Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70 Query: 69 -------------RHPQLIVGYVPQKVTIENTL--------------PLSLMRFMTLSMP 101 ++P+ I G V+ L PL L+ F Sbjct: 71 PDERARAGLFLAFQYPEEIPG-----VSNLEFLRSALNARRSARGEEPLDLLDF------ 119 Query: 102 SSRDDVLQILDRVNLIGKY-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + L + + ++ NR++ + SGGE +R + + L +P L +LDE G+D Sbjct: 120 --LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI 177 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHM 189 + E I +R+ L+I+H + Sbjct: 178 DALKIVAEGINRLREPDR-SFLIITHYQRL 206 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 64.4 bits (157), Expect = 2e-11 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 35/181 (19%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT--GIIKPTI-- 64 P++ +S+ S + N K L ++ PNEI LIGP+GSGKST+ + I + P + Sbjct: 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63 Query: 65 -GSVKRHPQLIVGYVPQKVTIE------------NTLPLSLMRFMT--LSMPSSRDDVLQ 109 GS+ + I Y P+ T++ N P+S+ + L + +D Q Sbjct: 64 TGSIVYNGHNI--YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK--Q 119 Query: 110 ILDRV---NLIGKYNRN-IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 +LD +L G + +KD LSGG+ QR +A+ L P +++LDEP + Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179 Query: 158 D 158 D Sbjct: 180 D 180 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 64.3 bits (157), Expect = 3e-11 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 28/198 (14%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81 D++FT++ EI+ + G G+G++ + K++ G + T G V +V PQ Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 Query: 82 VTIEN-------TLPLSLMRFMTLSMP---SSRDDVLQILDRVNLIGKYNR--NIK---- 125 V I L +S+ M+L+ S L+ D + + R NIK Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 Query: 126 -----DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 LSGG Q+ +A+ L+ +P +L+LDEP +G+D + +Y+LI + G I Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSI 448 Query: 181 LLISHNLHMVMASTDTVI 198 +L+S + V+ +D ++ Sbjct: 449 ILVSSEMPEVLGMSDRIL 466 Score = 57.7 bits (140), Expect = 2e-09 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 34/207 (16%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 L+ L G K L + P ++ L+G NG+GKST+ K++TGI GS+ Sbjct: 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61 Query: 68 K-----------RHPQ-----LI---VGYVPQKVTIENTLPLSLMRFMTLS--------M 100 + Q +I + +PQ EN L R M Sbjct: 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKM 118 Query: 101 PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160 + D +L R+NL ++ + +LS GE Q +AK L + ++++DEP + Sbjct: 119 YAEADKLLA---RLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 Query: 161 GELSLYELITSVRQSTGCGILLISHNL 187 SL+ +I ++ S G GI+ ISH L Sbjct: 176 ETESLFRVIRELK-SQGRGIVYISHRL 201 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 63.9 bits (155), Expect = 3e-11 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 18/214 (8%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--- 74 F +G + +N T N+I +G NG+GK+T ++TG++ PT G+V + I Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997 Query: 75 -------VGYVPQKVTIENTLPLS--LMRFMTLSMPSSRDDVLQ---ILDRVNLIGKYNR 122 +G PQ + + L ++ ++ + L S + L+ +L+ L K N Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE 1057 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 +DLSGG ++ +A A + ++VLDEP G+D S+++L+ R +G I++ Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIM 1115 Query: 183 ISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKD 215 +H++ D + I R+ G P +K+ Sbjct: 1116 STHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 Score = 46.5 bits (110), Expect = 5e-06 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV----------GYVPQKV 82 ++P E L+G NG+GK+T K++TG T G + I+ GY PQ Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021 Query: 83 TIENTLP--LSLMRFMTL-SMPSSRDDVLQ--ILDRVNLIGKYNRNIKDLSGGEFQRALL 137 I++ L L + L +P+ + + + + L +R SGG ++ Sbjct: 2022 AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 Query: 138 AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 A AL+ P L++LDEP G+D L+ I S+ + G ++L SH++ Sbjct: 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSM 2130 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 63.5 bits (154), Expect = 4e-11 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 37/214 (17%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG-------------II 60 G+ L D++ I +I+ IGP+G GKST+ + LI G I Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQ-ILDRV 114 I SVK Q VG V Q+ N P S+ + + + D++++ L R Sbjct: 91 DSQINSVKLRRQ--VGMVFQR---PNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA 145 Query: 115 NLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 + + +K+ LSGG+ QR +A+A+ KP++L++DEP +D + EL Sbjct: 146 AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNNRI 204 +++ I++++HN+ D N I Sbjct: 206 ELKEQY--TIIMVTHNMQQASRVADWTAFFNTEI 237 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 63.5 bits (154), Expect = 5e-11 Identities = 59/201 (29%), Positives = 88/201 (43%), Gaps = 53/201 (26%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-----------IAKL-----ITG---------II 60 L DIN I+ N+I LIG +G GKST IAK+ I G + Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDD----VLQILDRVNL 116 + +G V + P + V + + ++ L M ++D+ V+ L +V L Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLH---------GMIKNKDEEEALVVDCLQKVGL 128 Query: 117 I----GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 K +N LSGG+ QR +A+AL KP LL+LDEP +D + EL+ Sbjct: 129 FEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE- 187 Query: 173 RQSTGCGILLISHNLHMVMAS 193 +SHNL M+M + Sbjct: 188 ----------LSHNLSMIMVT 198 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 63.4 bits (155), Expect = 5e-11 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 51/213 (23%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--------------------- 59 G K L +++ ++ EIV+L G NG+GKST+ K+++G+ Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75 Query: 60 IKPT--IGSVKRHPQLIVGYVPQKVTIENT------LPLSLMRFMTLSMPSSRDDVLQIL 111 I+ T G H +L + V + +EN P +M + + + + + +L Sbjct: 76 IRDTERAGIAIIHQELAL--VKELSVLENIFLGNEITPGGIMDYDAMYLRAQK-----LL 128 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE---- 167 ++ L + +L G+ Q +AKAL ++ LL+LDEP SL E Sbjct: 129 AQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA--------SLTESETA 180 Query: 168 -LITSVR--QSTGCGILLISHNLHMVMASTDTV 197 L+ +R ++ G + ISH L+ V A +DT+ Sbjct: 181 VLLDIIRDLKAHGIACIYISHKLNEVKAISDTI 213 Score = 63.0 bits (154), Expect = 6e-11 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 40/208 (19%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------------------------ 59 K + D++F+++ EI+ + G G+G++ + + + G Sbjct: 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 Query: 60 IKPTIGSV----KRHPQLIVGYVPQKVTIEN-TLPLSLMRFMTLSM---PSSRDDVLQIL 111 I I V KR G VP +N TL +L RF S + +L+ + Sbjct: 336 IAQGIAMVPEDRKRD-----GIVPVMGVGKNITLA-ALDRFTGGSRIDDAAELKTILESI 389 Query: 112 DRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 R+ + I LSGG Q+A+LAK LL P +L+LDEP +GID + +Y+LI Sbjct: 390 QRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI 198 + Q G I++IS L V+ +D V+ Sbjct: 450 QLVQQ-GVAIIVISSELPEVLGLSDRVL 476 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 63.4 bits (154), Expect = 5e-11 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 41/247 (16%) Query: 13 LSNTSFHKN--GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 L+ HK +++L+ ++ +++++IG +GSGKST + I + KP+ GS+ + Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 Query: 71 PQLI--VGYVPQKVTIENTLPLSLMR--------------FMT--------------LSM 100 Q I V ++ + + L L+R MT LS Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125 Query: 101 PSSRDDVLQILDRVNLI----GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 +R+ ++ L +V + GKY LSGG+ QR +A+AL +P +L+ DEP Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYP---VHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215 +D P + I G +++++H + + VI L+ +I +G P+ + Sbjct: 183 LD-PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241 Query: 216 NAEYIRL 222 N + RL Sbjct: 242 NPQSPRL 248 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 63.2 bits (154), Expect = 6e-11 Identities = 47/204 (23%), Positives = 98/204 (48%), Gaps = 28/204 (13%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK---- 81 ++D++F + EI+ + G G+ ++ I + + GI + + G++ H + I + + Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 Query: 82 ----VTIE--------------NTLPLSLMRFMT----LSMPSSRDDVLQILDRVNL-IG 118 VT E N+L ++ + L + D ++D + + Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP 383 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 + I LSGG Q+ ++ + LL +P +L+LDEP +GID + +Y+LI + + Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DK 442 Query: 179 GILLISHNLHMVMASTDTVICLNN 202 GI++IS + ++ TD ++ ++N Sbjct: 443 GIIIISSEMPELLGITDRILVMSN 466 Score = 54.4 bits (131), Expect = 3e-08 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 23/200 (11%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK 81 G K L ++N ++P+ I L+G NG+GKST+ K + GI + GS+ + + + K Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE-IDFKSSK 68 Query: 82 VTIEN-------TLPLSLMRFMTLSMPSSR--------------DDVLQILDRVNLIGKY 120 +EN L L L R + +M R D I D +++ Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP 128 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 + LS + Q +AKA ++++DEP + L+ +I +++ GCGI Sbjct: 129 RAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGI 187 Query: 181 LLISHNLHMVMASTDTVICL 200 + ISH + + D + L Sbjct: 188 VYISHKMEEIFQLCDEITIL 207 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 62.9 bits (153), Expect = 7e-11 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 39/207 (18%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI---------------------I 60 G K L I+ ++P E V L G NG+GKST+ K+++G+ I Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72 Query: 61 KPT--IGSVKRHPQLIVGYVPQKVTIEN-------TLPLSLMRFMTLSMPSSRDDVLQIL 111 + T G V H +L + VP+ EN TLP M + + + + +L Sbjct: 73 RDTERAGIVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAK-----NLL 125 Query: 112 DRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 + L R + D GG+ Q +AKAL ++ LL+LDEP + L ++I Sbjct: 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTV 197 ++ G + ISH L+ V A DT+ Sbjct: 186 DLKAH-GVACVYISHKLNEVKAVCDTI 211 Score = 59.5 bits (144), Expect = 7e-10 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 38/207 (18%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------------------------ 59 K + D++F+++ EI+ + G G+G++ + + + G Sbjct: 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 Query: 60 IKPTIGSV----KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---PSSRDDVLQILD 112 I+ I V KRH G VP +N L F + + + Sbjct: 334 IRAGIAMVPEDRKRH-----GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQ 388 Query: 113 RVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171 R+ + I LSGG Q+A+LAK LL P +L+LDEP +G+D + +Y+LI Sbjct: 389 RLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448 Query: 172 VRQSTGCGILLISHNLHMVMASTDTVI 198 + Q G I+++S L V+ +D V+ Sbjct: 449 LAQE-GVAIIVVSSELAEVLGLSDRVL 474 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 62.8 bits (153), Expect = 7e-11 Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 42/211 (19%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I + + + + + ++D+N I+P + IGP+G GKST+ + + + + G+ Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64 Query: 71 PQLIVG---YVP--QKVTIENTLPLSLMR---FMTLSMPSSRDDVLQILDRVNLIGKYNR 122 L+ G Y P V + T+ + R F T+S+ RD+V+ + L G N+ Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI---RDNVVA---GLKLNGVRNK 118 Query: 123 N------------------IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 +KD LSGG+ QR +A+A+ +P++L++DEP Sbjct: 119 KDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNL 187 +D L++ +LI ++Q I++++HN+ Sbjct: 179 LDPISTLAIEDLINELKQDY--TIVIVTHNM 207 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 62.2 bits (152), Expect = 1e-10 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 ++ + + + G + ++FT+ E + L GPNGSGK+T+ +LI G++ P G++K Sbjct: 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFM--------TLSMP-----------SSRDDVLQ 109 I++ ++ L++ D+ Sbjct: 61 LDGG----------DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAA 110 Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L+ V L + LS G+ +R LA+ L+ + +LDEP +D ELI Sbjct: 111 ALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170 Query: 170 TSVRQSTGCGILLIS-HN 186 + + G GI++ + H Sbjct: 171 RA-HLAQG-GIVIAATHI 186 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 62.3 bits (151), Expect = 1e-10 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 31/212 (14%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPT---IGSV 67 ++ +F+ GY+ L++IN + ++ LIGP+G GKST + + + P G + Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSS---------------RDDVLQ--- 109 HP + P+ IE + +S++ P S R +L+ Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138 Query: 110 --ILDRVNLIGKYNRNIKDL----SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 L L + + DL SGG+ QR +A+AL P +L+ DEP +D Sbjct: 139 ENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198 Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTD 195 S+ ELI+ ++ IL+++HN+ +D Sbjct: 199 SIEELISDLKNKV--TILIVTHNMQQAARVSD 228 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 61.8 bits (151), Expect = 1e-10 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 53/202 (26%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------------ 68 +G + +NFT+ + + L+GP+G+GK+++ + G + P GS+K Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE 419 Query: 69 ---RH-------PQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVL-QILDRVN- 115 +H PQL G T+ +N L L P + D+ L Q L+ Sbjct: 420 SWRKHLSWVGQNPQLPHG------TLRDNVL---------LGNPDASDEQLQQALENAWV 464 Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 L + I D LS G+ QR LA+ALL+ LL+LDEP +D E + Sbjct: 465 SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524 Query: 166 YELITSVRQSTGCGILLISHNL 187 + + + + L+++H L Sbjct: 525 MQALNAASRRQTT--LMVTHQL 544 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 61.9 bits (151), Expect = 2e-10 Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 41/177 (23%) Query: 2 SNALSITPLISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59 A + L N +F NG+ + IN TIK E++ LIG NGSGKST+A L+TG+ Sbjct: 314 PQAFPDWQTLELRNVTFAYQDNGFS-VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 Query: 60 IKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL--------------------- 98 +P G + L+ G + VT E + L Sbjct: 373 YQPQSGEI-----LLDG---KPVTAEQ-----PEDYRKLFSAVFTDFHLFDQLLGPEGKP 419 Query: 99 SMPSSRDDVLQIL---DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 + P+ + L+ L ++ L N+K LS G+ +R L AL + ++L+LDE Sbjct: 420 ANPALVEKWLERLKMAHKLELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDE 475 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 61.6 bits (149), Expect = 2e-10 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 36/226 (15%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 +I N + +K L +IN I N I LIGP+G GKST + + + + +K Sbjct: 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM-NDLVEGIKI 65 Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN-------------- 115 +I Y + + N L L R + + + ++ I D ++ Sbjct: 66 EGNVI--YEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123 Query: 116 ----------------LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + K N N LSGG+ QR +A+ L +PN++++DEP +D Sbjct: 124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRI 204 + ELI ++++S I++++HN+ +D T LN I Sbjct: 184 ISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCI 227 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 61.4 bits (150), Expect = 2e-10 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 39/206 (18%) Query: 11 ISLSNTS--FHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 I L N S F + G I L +++ I EI +IG +G+GKST+ + I + +PT G Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61 Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMR---------FMTLS---------MP-----SS 103 V L+ G Q +T + L R F LS +P + Sbjct: 62 V-----LVDG---QDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP 113 Query: 104 RDD----VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + + V ++L+ V L K +R LSGG+ QR +A+AL P +L+ DE +D Sbjct: 114 KAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 Query: 160 PGELSLYELITSVRQSTGCGILLISH 185 S+ EL+ + + G I+LI+H Sbjct: 174 ATTRSILELLKDINRELGLTIVLITH 199 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 61.4 bits (149), Expect = 2e-10 Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 37/239 (15%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTI-------------AKLITG 58 S+ N + +IL DIN I E+ IGP+G GKST K+ Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66 Query: 59 IIKPTIGSVKRHPQLI-----VGYVPQKVTIENTLPLSL---------MRFMTLSMPSSR 104 + I ++ VG V QK N P S+ + + + Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQK---PNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123 Query: 105 DDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160 + V + L V L + +KD LSGG+ QR +A+A+ KP +L++DEP +D Sbjct: 124 EIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAE 218 + LI ++++ I++++H++ +D V + RI Q I N + Sbjct: 184 ATNVIENLIQELKKNF--TIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 61.1 bits (148), Expect = 2e-10 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIV---GYVPQ 80 L +I+F + EIV +IG NGSGKST++ LI G+ P G+V K LI G Q Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY-NRNIKDLSGGEFQRALLAK 139 IEN LM M L+ ++ + +I++ + IGK+ + +K S G R A Sbjct: 100 LTGIENIELKGLM--MGLTKEKIKEIIPEIIEFAD-IGKFIYQPVKTYSSGMKSRLGFAI 156 Query: 140 ALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190 ++ P++LV+DE L D + + ++ G I ISH+L V Sbjct: 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQV 206 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 60.9 bits (147), Expect = 3e-10 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 39/221 (17%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG- 58 + P I + +F + +++L++IN +I +IGP+G GKST+ + +++G Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60 Query: 59 ------------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLS 99 I P + V + VG V Q+ N P S+ R + + Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKR--VGMVFQQ---PNPFPKSIFDNVAFGPRMLGTT 115 Query: 100 MPSSRDDVLQ-ILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPL 154 S D+V++ L + L + N+ LSGG+ QR +A+ L +P ++++DEP Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 +D + + EL+ ++Q+ I +++HN+ ++D Sbjct: 176 SALDPVSTMRIEELMQELKQNY--TIAIVTHNMQQAARASD 214 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 60.9 bits (148), Expect = 3e-10 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 44/238 (18%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKPT 63 IS+ + ++ L+ IN I+ N++ LIGP+G GKST + LI + Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV--KI 61 Query: 64 IGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLM-------RFMTLSMPSS 103 G V Q I VG V Q+ N P+S+ R + Sbjct: 62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQ---PNPFPMSIYDNVAYGPRTHGIKDKKK 118 Query: 104 RDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156 D++++ + D V + ++ LSGG+ QR +A+AL +P +L++DEP Sbjct: 119 LDEIVEKSLKGAALWDEVK--DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHM-VMASTDTVICLNNRICYQGPPQTI 213 +D L + ELI +++ I++++HN+ S T LN I G + Sbjct: 177 LDPISTLKIEELIQELKKDY--TIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 60.4 bits (146), Expect = 4e-10 Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 35/215 (16%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70 I + +F + L+ I+ I+ +V IGP+G GKST +L + + Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63 Query: 71 PQLI------------------VGYVPQKVTIENTLPLSLMRFMTLSMPSS--------R 104 I VG V Q+ N P S+ + + + R Sbjct: 64 EIRIDGRNIYDKGVQVDELRKNVGMVFQR---PNPFPKSIFENVAYGLRVNGVKDNAFIR 120 Query: 105 DDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160 V + L L + +K+ LSGG+ QR +A+A+ P++L++DEP +D Sbjct: 121 QRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPI 180 Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 + ELI +++ I++++HN+ +D Sbjct: 181 STAKVEELIHELKKDY--TIVIVTHNMQQAARVSD 213 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 60.1 bits (146), Expect = 5e-10 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 24/209 (11%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----TIGSVKRHPQLIVGYVPQKVT 83 ++ T++ ++ L+G +GSGKS GI+ T G V + + + Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 Query: 84 IENTL--------PLSLMR------FMTLSMPSSRDDVLQILDRVNLIGKYNRNIK---- 125 I + PL M + L P+ + L+ V L R +K Sbjct: 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL-ENAARVLKLYPF 139 Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 ++SGG QR ++A ALL + ++ DEP +D + + +L+ S+ Q G+LL++H Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 Query: 186 NLHMVMASTDTVICLNN-RICYQGPPQTI 213 ++ +V D V +++ RI QG +T+ Sbjct: 200 DMGVVARLADDVAVMSHGRIVEQGDVETL 228 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 59.6 bits (144), Expect = 6e-10 Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 39/218 (17%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LIT 57 +I+ S+ ++ L+ I+ NEI LIGP+G GKST + IT Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64 Query: 58 G--------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 G I P V+ Q VG V Q+ N P S+ + + + Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQ--VGMVFQQ---PNPFPFSIYENVIYGLRLAGVKDKA 119 Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 +LD + + + LSGG+ QR +A+ L KP++++LDEP + Sbjct: 120 VLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSAL 179 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 D + ++ +R I+L++H++H +D Sbjct: 180 DPISSTQIENMLLELRDQY--TIILVTHSMHQASRISD 215 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 59.7 bits (145), Expect = 6e-10 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 31/197 (15%) Query: 19 HKNGYKILQ---DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-RH---- 70 H+ G L +++ T+ E V L GP+G+GKST+ K + P G + RH Sbjct: 14 HQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW 73 Query: 71 -------PQLIV-------GYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110 P+ ++ GYV Q +V+ + L+ + ++R ++ Sbjct: 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE-RGVPREAARARAREL 132 Query: 111 LDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 L R+N+ + ++ SGGE QR +A+ + +L+LDEP +D + ELI Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192 Query: 170 TSVRQSTGCGILLISHN 186 + G ++ I H+ Sbjct: 193 AEAKAR-GAALIGIFHD 208 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 59.7 bits (145), Expect = 6e-10 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSV--------KRHPQL 73 +L++++ KP E++ ++G +G+GK+T+ + + GSV + + Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99 Query: 74 IVGYVPQ------KVTIENTLPLSLMRFMTLSMPSS--RDDVLQILDRVNL-------IG 118 I YV Q +T+ L M + R+ V ++L + L IG Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 R +K LSGGE +R A LL P LL DEP G+D S+ +++ + Q Sbjct: 160 VPGR-VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKT 218 Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211 I I + D +I + R+ Y G P Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 59.6 bits (144), Expect = 6e-10 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 40/237 (16%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT------------ 57 ++ + + S + + + DI+ I+ + + LIGP+G GKST + I Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80 Query: 58 --------GIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 I+ I V + +G V QK N P S+ +T ++ + + Sbjct: 81 GEILYEGLNILDSNINVVNLRRE--IGMVFQK---PNPFPKSIYNNITHALKYAGERRKS 135 Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 +LD + + + + + LSGG+ QR +A+ L KP +L+LDEP + Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTI 213 D + ELIT +++ I++++HN+ + +D T LN + + I Sbjct: 196 DPISNAKIEELITELKEEY--SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 59.5 bits (144), Expect = 8e-10 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 37/201 (18%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74 L++IN +I NE+ +IGP+G GKST K + +I+ + +VK ++ Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ-MVPNVKLTGEMNYNGSNILKGKV 86 Query: 75 --------VGYVPQKVTIENTLPLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNR 122 +G V QK N P S+ + + ++ + +I+++ Sbjct: 87 DLVELRKNIGMVFQK---GNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD 143 Query: 123 NIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 +KD LSGG+ QR +A+AL P++L++DEP +D + ELI +++ Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203 Query: 175 STGCGILLISHNLHMVMASTD 195 I++++HN+ +D Sbjct: 204 KY--TIVIVTHNMQQAARVSD 222 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 59.5 bits (144), Expect = 9e-10 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 38/208 (18%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74 L++IN I NE+ +IGP+G GKST K + +++ + SVK +++ Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE-LVPSVKTTGKILYRDQNIFDKSY 98 Query: 75 --------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV------------ 114 VG V QK N P S+ +T + LD + Sbjct: 99 SVEELRTNVGMVFQK---PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD 155 Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 L + + N LSGG+ QR +A+ L +P+++++DEP +D L + EL+ +++ Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 Query: 175 STGCGILLISHNLHMVM-ASTDTVICLN 201 I++++HN+ S T LN Sbjct: 216 DY--SIIIVTHNMQQAARISDKTAFFLN 241 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 59.3 bits (144), Expect = 9e-10 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 30/202 (14%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP-QKV 82 K + + + E + ++G +G GKST A+ I G++K T G V + ++G + Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94 Query: 83 TIENTL------PL-SLMRFMT---------------LSMPSSRDDVLQILDRV----NL 116 + + + PL SL MT LS +D V ++ +V NL Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL 154 Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176 I NR + SGG+ QR +A+AL+ +P L++ DEP+ +D + + L+ +++ Sbjct: 155 I---NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211 Query: 177 GCGILLISHNLHMVMASTDTVI 198 G ++ I+H+L +V +D V+ Sbjct: 212 GLSLIFIAHDLAVVKHISDRVL 233 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 59.3 bits (143), Expect = 1e-09 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 27/248 (10%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68 +++ S+ F +L+ +N + + L+G NG GKST+ ++G+++P G+V Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 Query: 69 ---------------RHPQLIVGYVPQK----VTIENTLPLSLMRFMTLSMPSSR--DDV 107 R V P++ I++ + SL +R D+ Sbjct: 61 QGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEA 120 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 L ++D + ++ I+ LS G+ +R +A AL+ + L+LDEP G+D G + Sbjct: 121 LTLVDAQHF---RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAEYIRLFGTR 226 +I + G +++ SH++ ++ +D V L +I G P + E + G Sbjct: 178 IIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLT 236 Query: 227 ATEILAIH 234 ++ +H Sbjct: 237 QPWLVKLH 244 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 59.1 bits (143), Expect = 1e-09 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 16/147 (10%) Query: 18 FHKNG-YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV- 75 HKN + L DI+ +++ L+G NGSGKST++ +I G + PT+G V R+ ++ V Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVI 90 Query: 76 ----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIGKY-NRNIKDL 127 G Q IEN + F L M R ++ + ++ + +G++ + +K Sbjct: 91 AISAGLSGQLTGIEN------IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKY 144 Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPL 154 S G + + + P++LV+DE L Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEAL 171 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 58.4 bits (141), Expect = 1e-09 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 42/211 (19%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENT 87 D++F K + V ++GP G+GK+T+ L+ + PT+G + LI G VT E+ Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-----LIDGIDINTVTRESL 407 Query: 88 -------------LPLSLMRFMTLSMPSSRDDVLQ-----------ILDRVN----LIGK 119 S+ + L + D+ + IL R N L+G+ Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467 Query: 120 Y-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 NR LSGGE QR +A+A+L+ +LVLDE +D E + I ++R++ Sbjct: 468 RGNR----LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTT 523 Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQG 208 I I+H L V + D V+ L+ R+ +G Sbjct: 524 FI--IAHRLSTVR-NADLVLFLDQGRLIEKG 551 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 58.2 bits (141), Expect = 2e-09 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 26/183 (14%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIVGYV 78 NG +++ ++F + + + GPNG GKS++ +++ + P G K + YV Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLF-YV 520 Query: 79 PQKVTIEN-TL------PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN-----IKD 126 PQ+ + TL P S + S D+ QILD V L R ++D Sbjct: 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQD 578 Query: 127 ----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 LSGGE QR +A+ KP +LDE + E +Y L + G + Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----REFGITLFS 634 Query: 183 ISH 185 +SH Sbjct: 635 VSH 637 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 57.3 bits (139), Expect = 3e-09 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 42/195 (21%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85 ++D++F KP + V ++GP G+GKST+ L+ + P G + I G + VT Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-----IDGTDIRTVTRA 405 Query: 86 NTLPLSLMR-----F-------------MTLSMPSSRD-DVLQILDRV---NLI----GK 119 SL R F + + P + D ++ +R + I Sbjct: 406 -----SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDG 460 Query: 120 YNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 Y+ + + LSGGE QR +A+ALL+ P +L+LDE +D E + + + + Sbjct: 461 YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK- 519 Query: 176 TGCGILLISHNLHMV 190 G +I+H L V Sbjct: 520 -GRTTFIIAHRLSTV 533 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 57.3 bits (138), Expect = 3e-09 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 47/208 (22%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI----------------- 59 + L DIN I N+I LIGP+G GKST + LI+ + Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 Query: 60 -----IKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDV 107 ++ +G V + P V Y P+ I++ L + L + D+V Sbjct: 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137 Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167 L ++ LSGG+ QR +A+ + KP+++++DEP +D L + + Sbjct: 138 KDDL---------KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188 Query: 168 LITSVRQSTGCGILLISHNLHMVMASTD 195 L+ +++ I++++HN+ +D Sbjct: 189 LMVELKKEY--TIVIVTHNMQQASRVSD 214 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 57.3 bits (139), Expect = 3e-09 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 53/198 (26%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT---------------GIIKPTIGSVKRH 70 L++INF I + V L+G +GSGKSTIA L+T + T+ S++ Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 Query: 71 PQLIVGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVL----------------Q 109 V V Q V TI N + + SR+ + Sbjct: 419 ----VALVSQNVHLFNDTIANNIAYARTEQY------SREQIEEAARMAYAMDFINKMDN 468 Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 LD V IG+ N LSGG+ QR +A+ALLR +L+LDE +D E ++ + Sbjct: 469 GLDTV--IGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523 Query: 170 TSVRQSTGCGILLISHNL 187 ++++ L+I+H L Sbjct: 524 DELQKNR--TSLVIAHRL 539 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 57.2 bits (138), Expect = 4e-09 Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 51/236 (21%) Query: 15 NTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72 N +F + KI +++++F+++ E + ++G +GSGKS A + +++ G V+ Sbjct: 19 NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 Query: 73 LIVGYVPQKVTIENTLPLSLMRF-------------MT-----------------LSMPS 102 L+ Q + + + + MR MT L + Sbjct: 79 LLRRRSRQVIEL-SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137 Query: 103 SRDDVL----QILDRVN------LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 SR++ + ++LD+V ++ +Y LSGG QR ++A AL +P +L+ DE Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPHQ---LSGGMRQRVMIAMALSCRPAVLIADE 194 Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208 P +D + + +LI +++ G++ I+H++ +V D V+ + YQG Sbjct: 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM-----YQG 245 Score = 53.3 bits (128), Expect = 6e-08 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 24/218 (11%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS------------------V 67 ++ ++F + P E ++L+G +GSGKST + + +++ G + Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399 Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYN-R 122 +R Q I + T+ S+M + L ++ V +L+RV L+ ++ R Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 + SGG+ QR +A+AL P +++ DE + +D + L+ +++ G L Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 Query: 183 ISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEY 219 ISH++ +V + V + +I GP + + +N ++ Sbjct: 520 ISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH 557 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 56.8 bits (137), Expect = 4e-09 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 31/190 (16%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--------------------KPT 63 ++L +N I N I L+GP+GSGKST+ ++ +I K Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 Query: 64 IGSVKRHPQLIVGY---VPQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLI-- 117 + ++R Q++ +P EN L L L R + S ++ V L++ L Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKELQERVRWALEKAQLWDE 135 Query: 118 --GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 + + LSGG+ QR +A+AL +P +L+ DEP +D + L +++ Sbjct: 136 VKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD 195 Query: 176 TGCGILLISH 185 I+L++H Sbjct: 196 M--TIVLVTH 203 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 56.9 bits (137), Expect = 5e-09 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 33/199 (16%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTI----------AK---LITGIIKPTIGSVKRHP 71 +L+ IN TI E V ++G G+GKS++ A+ +I G+ IG Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 Query: 72 QLIVGYVPQK-VTIENTLPLSLMRF---------MTLSMPSSRDDVLQILDRVNLIGKYN 121 ++ + +PQ V +L ++L F L + + V + D+++ + Sbjct: 1361 KITI--IPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDH--ECA 1416 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV--RQSTGCG 179 ++LS G+ Q LA+ALLRK +LVLDE +D L LI S Q C Sbjct: 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD----LETDNLIQSTIRTQFEDCT 1472 Query: 180 ILLISHNLHMVMASTDTVI 198 +L I+H L+ +M T ++ Sbjct: 1473 VLTIAHRLNTIMDYTRVIV 1491 Score = 53.4 bits (128), Expect = 5e-08 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85 L I F+I +V ++G G GKS++ + + G V H + V YVPQ+ I+ Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--HMKGSVAYVPQQAWIQ 711 Query: 86 N-TLPLSLMRFMTLSMPSSRDDV--------LQIL---DRVNLIGKYNRNIKDLSGGEFQ 133 N +L +++ L+ + + L+IL DR IG+ N LSGG+ Q Sbjct: 712 NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTE-IGEKGVN---LSGGQKQ 767 Query: 134 RALLAKALLRKPNLLVLDEPLQGID 158 R LA+A+ ++ + D+PL +D Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVD 792 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 56.8 bits (138), Expect = 5e-09 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 27/213 (12%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 +P +S G K L DI+F + ++ L+G NG+GKST+ K+++G +P GS+ Sbjct: 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61 Query: 68 KRHPQ----------LIVG---------YVPQKVTIEN----TLPLSLMRFMTLSMPSSR 104 Q L G VP+ EN LP + ++ Sbjct: 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLP---HKGGIVNRRLLN 118 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 + + L+ + + + +K LS G+ Q +AKAL R ++ DEP + Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTV 197 L+ +I +R + G IL +SH + + A D + Sbjct: 179 LFRVIRELR-AEGRVILYVSHRMEEIFALCDAI 210 Score = 48.0 bits (115), Expect = 2e-06 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 I +LSGG Q+A+L + L +++LDEP +GID + +Y +I + G +L + Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFV 452 Query: 184 SHNLHMVMASTDTVI 198 S +L V+ D ++ Sbjct: 453 SSDLPEVLGVADRIV 467 Score = 35.3 bits (82), Expect = 0.013 Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 G + + I+F+++ EIV L G G+G+S + KL+ G + T G V Sbjct: 265 GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 56.2 bits (135), Expect = 7e-09 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 49/207 (23%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY-------- 77 ++D + I+ NEI IGP+G GKST+ + S+ R L+ G+ Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLR-----------SLNRMNDLVKGFRFEGHVHF 72 Query: 78 VPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR--------------- 122 + Q V + P+ + R++ + + I D V + NR Sbjct: 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQG 132 Query: 123 -----NIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 +KD LSGG+ QR +A+A+ +P +L+LDEP +D + EL+ Sbjct: 133 AALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM 192 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDT 196 +++ I L++HN+ + DT Sbjct: 193 VELKKDY--TIALVTHNMQQAIRVADT 217 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 56.3 bits (135), Expect = 7e-09 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 52/220 (23%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI------------------ 59 +L D+N IK N++ IGP+G GKST + LI G Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 Query: 60 ----IKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL 108 ++ IG V + P V Y P+ I + L + +L + D+V Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216 Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168 LD+ LSGG+ QR +A+A+ +P +L++DEP +D + EL Sbjct: 217 DDLDKAG---------NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208 I +++ I++++H++ +D + YQG Sbjct: 268 ILELKKKY--SIIIVTHSMAQAQRISDETVFF-----YQG 300 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 56.1 bits (135), Expect = 8e-09 Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 14/204 (6%) Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 L ++F +L++I+F ++ +++ + G GSGKS++ +I G ++P+ G +K Sbjct: 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487 Query: 72 QLIVGYVPQKV-----TIENTLPLSL----MRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122 + + + PQ TI++ + L R+ ++ ++ + + + Sbjct: 488 R--ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 I LSGG+ R LA+A+ + +L +LD P +D E ++E S IL+ Sbjct: 546 GIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604 Query: 183 ISHNLHMVMASTDTVICLNNRICY 206 S H+ A D ++ L+ +CY Sbjct: 605 TSKLEHLKKA--DKILLLHEGVCY 626 Score = 48.0 bits (114), Expect = 2e-06 Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 32/192 (16%) Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68 + + G +LQD++F+++ + V L+G GSGKST+ + ++ T G ++ Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV 1285 Query: 69 --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-------IG 118 + + G +PQKV I T +L + S +++ ++ + V L Sbjct: 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS----DEEIWKVAEEVGLKSVIEQFPD 1341 Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 K + + D LS G Q LA+++L K +L+LDEP +D ++L + +++Q Sbjct: 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD---PVTLQIIRKTLKQ 1398 Query: 175 S-TGCGILLISH 185 S + C ++L H Sbjct: 1399 SFSNCTVILSEH 1410 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 55.6 bits (134), Expect = 1e-08 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 29/211 (13%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIG 65 PL+ +S S G K +D++F + P E++ ++G +GSGKST+ + G + P T Sbjct: 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61 Query: 66 SVKRHPQLIV-----------------GYVPQ--------KVTIENTLPLSLMRFMTLSM 100 + R + G+V Q +V+ + LM Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY 121 Query: 101 PSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + R L+ V + + + + SGG QR +A+ L+ +P L+ +DEP G+D Sbjct: 122 GNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMV 190 + L +L+ + + G +++++H+L + Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVA 212 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 55.2 bits (133), Expect = 1e-08 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 49/217 (22%) Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG----------- 58 SF ++ L DI+ + N++ LIGP+G GKST + LI G Sbjct: 13 SFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 Query: 59 --IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116 I P + V+ + VG V QK N P S+ + + V + D+ L Sbjct: 73 ENIYDPHVDVVELRRR--VGMVFQK---PNPFPKSIFENVAYGL-----RVNGVKDKAYL 122 Query: 117 IGKYNRN---------IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 + R+ +KD LSGG+ QR +A+AL +P +L++DEP +D Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDT 196 + ELI ++ I++++HN+ +D Sbjct: 183 IATQKIEELIHELKARY--TIIIVTHNMQQAARVSDV 217 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 55.3 bits (134), Expect = 2e-08 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 60/233 (25%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 PL+S+ + K +D++F + P E++ ++G +GSGK+T+ ++ + P G V Sbjct: 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63 Query: 68 K---RHPQLIV-----------------GYVPQKVTIENTLPLSLMRFMTLS-------- 99 R QL G+V Q P +R M +S Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH-------PRDGLR-MQVSAGGNIGER 115 Query: 100 -MPSS-------RDDVLQILDRVNLIGKYNRNIKDL----SGGEFQRALLAKALLRKPNL 147 M R L+RV + R I DL SGG QR +A+ L+ P L Sbjct: 116 LMAVGARHYGDIRATAGDWLERVEIDA--AR-IDDLPTTFSGGMQQRLQIARNLVTHPRL 172 Query: 148 LVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL-------H--MVM 191 + +DEP G+D + L +L+ + + G +++++H+L H +VM Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 55.0 bits (133), Expect = 2e-08 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 29/204 (14%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI------------TG 58 I + N +F+ + L++IN I N++ IGP+G GKST+ + G Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG 73 Query: 59 IIK---PTIGSVKRHPQLI---VGYVPQK-----VTIENTLPLSLMRFMTLSMPSSRDDV 107 I I + K+ L+ VG V QK ++I + + + F LS + V Sbjct: 74 EILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERV 133 Query: 108 LQILDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163 L + L K +++ LSGG+ QR +A+ + +P +L+LDEP +D Sbjct: 134 EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193 Query: 164 SLYELITSVRQSTGCGILLISHNL 187 + ELIT ++Q +++++HN+ Sbjct: 194 RIEELITELKQDY--TVVIVTHNM 215 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 54.9 bits (132), Expect = 2e-08 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 23/193 (11%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 PL++ +F +N + ++F + E + + G NG+GK+T+ +++ G++ G ++ Sbjct: 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ 69 Query: 69 ------------RHPQLIV---GYVPQKVTIENTLPL-SLMRFMTLSMPSSRDDVLQILD 112 R + G T+EN L L MP S L Sbjct: 70 IDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGS------ALA 123 Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 V L G + ++ LS G+ +R LA+ L L +LDEP +D G ++L + S Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG-ITLVNRMISA 182 Query: 173 RQSTGCGILLISH 185 G L+ +H Sbjct: 183 HLRGGGAALVTTH 195 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 54.6 bits (132), Expect = 2e-08 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 45/215 (20%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI- 59 + + N + + L DI+ I N + IGP+G GKST+ + L+ Sbjct: 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82 Query: 60 IKPTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSL-------MRFMTLS 99 I+ G ++ Q I VG V Q+ N P S+ +R ++ Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVGMVFQR---PNPFPKSIYENVVYGLRLQGIN 136 Query: 100 MPSSRDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 D+ ++ + D V + + N LSGG+ QR ++A+A+ +P +L+LDE Sbjct: 137 NRRVLDEAVERSLRGAALWDEVK--DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194 Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 P +D L + ELIT ++ I++++HN+ Sbjct: 195 PTSALDPISTLKIEELITELKSKY--TIVIVTHNM 227 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 54.7 bits (131), Expect = 2e-08 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 42/237 (17%) Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKL----------- 55 + +IS + Y+ L I+ + E+ LIGP+G GKST + Sbjct: 1 MENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENI 60 Query: 56 -ITGIIK--------PTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMT--LSMPSSR 104 ITG IK + V+ + VG V Q+ T P S+ + L + + Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKE--VGMVFQQPT---PFPFSVYDNVAYGLKIAGVK 115 Query: 105 DDVLQILDRVNLIGK-----------YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153 D L I RV K +RN + SGG+ QR +A+AL +P +++LDEP Sbjct: 116 DKEL-IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174 Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGP 209 +D + E + ++ ++++HNL +D T +N + GP Sbjct: 175 TSALDPISSSEIEETLMELKHQY--TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 53.8 bits (129), Expect = 4e-08 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ++ + F + +LQ I+F + ++ L G NG+GK+T+ KLI G++ P G + Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 Query: 70 HPQLI----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119 Q I + +V + I L L + + ++ +L Sbjct: 61 ERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL 120 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR--QSTG 177 + LS G+ ++ L + + K L +LDEPL +D ELSL +IT ++ ++ G Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITKIQEHRAKG 177 Query: 178 CGILLISH 185 +LL SH Sbjct: 178 GAVLLTSH 185 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 53.6 bits (129), Expect = 4e-08 Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 24/210 (11%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH----PQLIVGYVPQ 80 L+++NFT+KP +++ + GP GSGKST+ LI + G ++ H +L + Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 Query: 81 KVTIENTLPL----SLMRFMTLSMP-SSRDDVLQIL-------DRVNLIGKYNRNIKD-- 126 ++ + + P ++ + L P +++ ++ + D + L Y+ + + Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449 Query: 127 --LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 LSGG+ QR +A+ALL +L+LD+ L +D E ++++ ++RQ ++IS Sbjct: 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE---HQILHNLRQWGEGRTVIIS 506 Query: 185 -HNLHMVMASTDTVICLNNRICYQGPPQTI 213 H L + +++ ++ + I +G + Sbjct: 507 AHRLSALTEASEILVMQHGHIAQRGNHDQL 536 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 53.6 bits (129), Expect = 4e-08 Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 45/197 (22%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-------------IAKLITGII--------KPTI 64 ++ I+ + N+I LIGP+GSGKST IA+ +TG I + I Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR-VTGQILYRGIDINRKEI 94 Query: 65 G--SVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-------- 114 +++H +G V Q+ N S+ +T ++ + ++LD + Sbjct: 95 NVYEMRKH----IGMVFQR---PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA 147 Query: 115 ----NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 + +++ LSGG+ QR +A+A+ KP++L++DEP +D + L E + Sbjct: 148 ALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207 Query: 171 SVRQSTGCGILLISHNL 187 ++++ I++++HN+ Sbjct: 208 ELKKNY--TIIIVTHNM 222 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 53.6 bits (129), Expect = 5e-08 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 45/208 (21%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIGSVKRHPQLIVGYVPQKVTI 84 D+NF+++ E + ++G +GSGKS A + G++ GS + + I+ +P+K Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN-LPEK--- 89 Query: 85 ENTLPLSLMRFMTLSM----------PSSR-----DDVLQILDRVNLIGKYNRNIKDL-- 127 L+ +R +SM P R +VL + ++ + +++ L Sbjct: 90 ----ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA 145 Query: 128 -----------------SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 SGG QR ++A ALL +P LL+ DEP +D + + L+ Sbjct: 146 VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLN 205 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI 198 +++ I++I+H+L +V D V+ Sbjct: 206 ELKREFNTAIIMITHDLGVVAGICDKVL 233 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 53.4 bits (128), Expect = 5e-08 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 47/224 (20%) Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI----------- 56 P + N S + ++ ++ +N I + +IGP+G GKST + I Sbjct: 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCH 96 Query: 57 -TG-----------------IIKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLS 91 TG +++ IG V + P + Y P+ I + L Sbjct: 97 TTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLE 156 Query: 92 LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLD 151 + +L + D+V LD+ N +G LSGG+ QR +A+ L +P +L+LD Sbjct: 157 EIVEKSLRKAALWDEVSDRLDK-NALG--------LSGGQQQRLCVARTLAVEPEILLLD 207 Query: 152 EPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 EP +D + +LI +R S I++++HN+ +D Sbjct: 208 EPTSALDPKATAKIEDLIQELRGSY--TIMIVTHNMQQASRVSD 249 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 53.0 bits (127), Expect = 7e-08 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 46/249 (18%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG----- 58 I + N + + + IL+++N I N + LIGP+G GKST + LI G Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63 Query: 59 --------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM----PSSRDD 106 I P + V+ + VG V QK N P S+ + + D Sbjct: 64 HIYLDGVDIYDPAVDVVELRKK--VGMVFQK---PNPFPKSIFDNVAYGLRIHGEDDEDF 118 Query: 107 VLQILDRV--------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 + + ++ + K +++ LSGG+ QR +A+ + P ++++DEP +D Sbjct: 119 IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVM-ASTDTVICLNNRICYQGPPQTI---- 213 + +LI +++ I++++HN+ S T LN I G I Sbjct: 179 PISTTKIEDLIHKLKEDY--TIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236 Query: 214 --KDNAEYI 220 K +YI Sbjct: 237 KDKRTEDYI 245 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 52.5 bits (126), Expect = 1e-07 Identities = 24/65 (36%), Positives = 41/65 (63%) Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185 +L+ GE Q+ ++A AL +P LL+ DEP ++ + ++ L+T + Q+ ILLISH Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 Query: 186 NLHMV 190 +L M+ Sbjct: 218 DLQML 222 Score = 35.9 bits (83), Expect = 0.009 Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61 K + ++ T+ EI L+G +GSGKS IAK I G+ K Sbjct: 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 52.3 bits (125), Expect = 1e-07 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 115 NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 +L KY+ N+ K LSGG+ QR +A+ALLR+P +L+LDE +D E + + I Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 ++ I+ I+H + + S D ++ NN Sbjct: 1403 DIKDKADKTIITIAHRIASIKRS-DKIVVFNN 1433 Score = 46.2 bits (109), Expect = 7e-06 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182 N LSGG+ QR +A+A++R P +L+LDE +D E + + I +++ + ++ Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 Query: 183 ISHNLHMVMASTDTVICLNNR 203 I+H L + + +T+ L+NR Sbjct: 636 IAHRLSTIRYA-NTIFVLSNR 655 Score = 44.6 bits (105), Expect = 2e-05 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 11 ISLSNTSFHKNGYK---ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 I N FH + K I +D+NFT+ + +G +G GKSTI KLI + PT G + Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 Score = 28.5 bits (63), Expect = 1.6 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56 I +D+ F+ + ++G GSGKST+ L+ Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 52.3 bits (125), Expect = 1e-07 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 36/216 (16%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI------------TG 58 + L + H ++D++ N + +IGP+G GKST+ + I TG Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64 Query: 59 II---KPTIGSVKRHPQLI---VGYVPQKVTIENTLPL-----SLMRFMTLSMPSSRDDV 107 I I P I VG V QK N P +++ L+ +R + Sbjct: 65 KILLDDTDIYDRGVDPVSIRRRVGMVFQK---PNPFPAMSIYDNVIAGYKLNGRVNRSEA 121 Query: 108 LQI----LDRVNLIGKYNRNIK----DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 +I L RV L + +K +LSGG+ QR +A+ + KP ++++DEP +D Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 L + ELI +++ I++++HN+ +D Sbjct: 182 ISTLKIEELIEELKEKY--TIIIVTHNMQQAARVSD 215 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 52.3 bits (125), Expect = 1e-07 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 38/218 (17%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT----------- 57 P I + N + + L++++ I N + LIGP+G GKST + + Sbjct: 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70 Query: 58 ---------GIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLSMP 101 I +P + V+ VG V QK N P+S+ R + Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKN--VGMVFQK---PNPFPMSIYDNVAYGPRIHGANKK 125 Query: 102 SSRDDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 V L L + + +K LSGG+ QR +A+ L KP +++ DEP + Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 D + +LI ++++ I++++HN+ +D Sbjct: 186 DPISTARIEDLIMNLKKDY--TIVIVTHNMQQAARISD 221 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 52.2 bits (125), Expect = 1e-07 Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 42/252 (16%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 P+I + N S + K ++++ I N+I +IGP+G GK+T+ + I + I + Sbjct: 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM-NDHIPGFR 60 Query: 69 RHPQLI-------------------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109 ++ VG V QK T P+S+ + Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT---PFPMSIYDNVAFGPRIHGVKSKH 117 Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 LDR+ + + N+ LSGG+ QR +A+AL +P +++LDEP + Sbjct: 118 KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNA 217 D + +L+ S I++++HN+ + D + + Y+G Sbjct: 178 DPIATQRIEKLLE--ELSENYTIVIVTHNIGQAIRIADYIAFM-----YRGELIEYGPTR 230 Query: 218 EYIRLFGTRATE 229 E + + TE Sbjct: 231 EIVERPKNKLTE 242 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 51.3 bits (123), Expect = 2e-07 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 43/220 (19%) Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK------ 54 S ++ N + + + ++++ I N+I IGP+G GKSTI + Sbjct: 1 TSTLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 Query: 55 -LITGIIKPTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMT--- 97 LI G G V H + + +G V QK N P S+ + Sbjct: 61 DLIPGF--RVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK---PNPFPKSIYDNIAYGA 115 Query: 98 --LSMPSSRDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148 D++++ + D V K ++ LSGG+ QR +A+A+ +P ++ Sbjct: 116 RINGYKGDMDELVERSLRQAALWDEVK--DKLKQSGLSLSGGQQQRLCIARAIAVQPEVI 173 Query: 149 VLDEPLQGIDFPGELSLYELI-TSVRQSTGCGILLISHNL 187 ++DEP +D L + EL+ Q T I++++HN+ Sbjct: 174 LMDEPCSALDPISTLRIEELMHELKEQYT---IIIVTHNM 210 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 51.0 bits (122), Expect = 3e-07 Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 38/194 (19%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKPTIGSVK---------- 68 L+ IN I ++ LIGP+G GKST+ + LI G+ G + Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV--KITGKLTMDGEDIYGNI 76 Query: 69 --RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIG----- 118 ++ VG V QK N P+S+ + + + ++LD V +L G Sbjct: 77 DVADLRIKVGMVFQK---PNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133 Query: 119 ----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 + + LSGG+ QR +A+ + +P+++++DEP +D + EL+ +++ Sbjct: 134 EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193 Query: 175 STGCGILLISHNLH 188 + I++++H++ Sbjct: 194 NY--TIVIVTHSMQ 205 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 50.2 bits (120), Expect = 5e-07 Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 32/225 (14%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-----PTIGSVKRHPQLI----- 74 +++ ++ I N + L+GP+G GKST+ + +++ G V+ + I Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 Query: 75 --------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQ-ILDRVNLIGK 119 VG V Q +TI + + + + + D+ ++ L + L + Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138 Query: 120 YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175 + D LSGG+ QR ++A+AL KP +L++DEP ID G + EL+ +++ Sbjct: 139 VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE 198 Query: 176 TGCGILLISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEY 219 I+L++H+ +D V L ++ GP + + +N E+ Sbjct: 199 Y--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 50.2 bits (120), Expect = 5e-07 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 39/229 (17%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68 + + I+ EI L+G +GSGKS++ + + G+ + GSV + Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLR 101 Query: 69 RHPQLIVGYVPQK------VTIENTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGKYN 121 R V V QK +T+E + L M+ M R V + L+ V L + Sbjct: 102 RLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGM--PEAERRKRVDEQLELVGLAQWAD 159 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELS--LYELITSVRQSTG 177 + +LSGG QR LA+A ++L++DEP +D +L L EL + ++ Sbjct: 160 KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT-- 217 Query: 178 CGILLISHNLHMVMA-STDTVICLNNRICYQGPPQTI--KDNAEYIRLF 223 I+ +SH+L + I RI G P+ I +Y+ F Sbjct: 218 --IIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 50.2 bits (120), Expect = 5e-07 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 31/203 (15%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIVGYVPQK 81 +L+D++ ++ ++ ++G GSGKST+ + + + + G V +R + YVPQ+ Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS----IAYVPQQ 729 Query: 82 VTIENTLPLSLMRFMTLSMPSSRDDVLQI----LDRVNLIGKYNRNIKD----LSGGEFQ 133 I N + F + D +++ D L G I + LSGG+ Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKA 789 Query: 134 RALLAKALLRKPNLLVLDEPLQGID-FPGELSLYELITSVRQSTGCGIL------LISHN 186 R LA+A+ ++ +LD+PL +D GE + E G L L +H Sbjct: 790 RVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--------LGALAGKTRVLATHQ 841 Query: 187 LHMVMASTDTVICL-NNRICYQG 208 +H+V D V+ L + R+ + G Sbjct: 842 VHVV-PRADYVVALGDGRVEFSG 863 Score = 35.1 bits (81), Expect = 0.014 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 53/213 (24%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY------- 77 +L+ ++F I P E V ++G GSGKST+ +++ G ++ + + I Y Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 Query: 78 ----VPQK-VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL---IGKYNRNIKD--L 127 +PQ V + T+ ++ F+ +S +V L+ V L + + I L Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLE----ASSAEVWAALELVGLRERVASESEGIDSRVL 1440 Query: 128 SGGEF----QRAL--LAKALLRKPNLLVL-DEPLQGIDFPG-----------ELSLYELI 169 GG QR L +A+ALL+K + +L DE ID P S Y +I Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID-PALDRQIQATVMSAFSAYTVI 1499 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202 T I+H LH V A D +I +++ Sbjct: 1500 T------------IAHRLHTV-AQYDKIIVMDH 1519 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 50.0 bits (119), Expect = 6e-07 Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------KRHPQL 73 L I+ I +IV ++G NG GKST+AKL G+ P G + + L Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 Query: 74 IVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQ 133 ++ + +L L+I D+V + LS G+ + Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 R L A L +L+ DE D + YE + + G I++ISH+ Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 49.6 bits (119), Expect = 7e-07 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Query: 127 LSGGEFQRALLAKALLRK---PNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183 LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVI 887 Query: 184 SHNLHMVMASTDTVICL 200 HNL V+ + D +I L Sbjct: 888 EHNLD-VIKTADYIIDL 903 Score = 34.2 bits (79), Expect = 0.027 Identities = 11/28 (39%), Positives = 21/28 (75%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 L++I+ I +++V + G +GSGKS++A Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSLA 39 Score = 30.8 bits (70), Expect = 0.34 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 L++I +I + G +GSGKST LI + P Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKST---LINDTLYPA 657 Score = 28.8 bits (65), Expect = 1.2 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEP 153 LD + L +R LSGGE QR LA + L VLDEP Sbjct: 476 LDYLTL----SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 516 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 49.4 bits (118), Expect = 8e-07 Identities = 24/72 (33%), Positives = 42/72 (58%) Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 LSGG QR ++A A+ +P LL+ DEP +D + + EL+ ++Q ++LI+H+ Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 Query: 187 LHMVMASTDTVI 198 L +V + +I Sbjct: 214 LALVAEAAHKII 225 Score = 30.5 bits (69), Expect = 0.36 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 10 LISLSNTSFH----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 L+++ S H ++ + I++++K E+V ++G +GSGKS + I G+I Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 49.0 bits (117), Expect = 1e-06 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 31/178 (17%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 +I + + + L D++ I N++ +IGP+G GKST + I + I + + Sbjct: 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR-MNDLIDAAR 96 Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRF--MTLSMP-----SSRDDV---LQILDR-VNLI 117 +L + V + P++L R M P S D+V L+I ++ Sbjct: 97 VEGELTFR--GKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154 Query: 118 GKYNRNIK-----------------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 + +++ DLSGG+ QR +A+A+ P ++++DEP +D Sbjct: 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 48.2 bits (114), Expect = 2e-06 Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 35/235 (14%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG--- 65 P ++ N + G +L ++ + +L+GP GSGK+T + + + G Sbjct: 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79 Query: 66 ---------SVKRHPQLI-----VGYVPQKVTIENTLPLSLM-------RFMTLSMPSSR 104 S+ + ++ VG + Q+ N P+S+M R L Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQR---PNPFPMSIMDNVLAGVRAHKLVPRKEF 136 Query: 105 DDVLQI-LDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159 V Q L V L + D LSGG+ Q LA+ L P +L+LDEP +D Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196 Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTI 213 + E I S+ + +++++HNL +D + + R+ +GP + + Sbjct: 197 TTTEKIEEFIRSL--ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 48.2 bits (115), Expect = 2e-06 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 30/200 (15%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-----------RHPQL 73 +L ++F I P+E V ++G G+GKS++ + I++ G + + Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 Query: 74 IVGYVPQK-VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL----- 127 ++G +PQ V T+ +L F + D+ + L+R +L RN L Sbjct: 1314 VLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 Query: 128 SGGE-F---QRALL--AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 GE F QR LL A+ALLR+ +LVLDE +D + + + I +S C +L Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTML 1427 Query: 182 LISHNLHMVMASTDTVICLN 201 +I+H L+ ++ D ++ L+ Sbjct: 1428 IIAHRLNTIIDC-DRILVLD 1446 Score = 47.4 bits (113), Expect = 3e-06 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 22/166 (13%) Query: 9 PLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 P IS+ N F K L +IN + +V ++G G GK+++ + G + P Sbjct: 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD 672 Query: 66 S--VKRHPQLIVGYVPQKVTIENT---------LPLSLMRFMTLSMPSSRDDVLQILDRV 114 + V R V YVPQ I N P R+ ++ L +L Sbjct: 673 ASVVIRGT---VAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGG 729 Query: 115 NL--IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 +L IG+ NI SGG+ QR +A+A+ ++ + D+PL +D Sbjct: 730 DLTEIGERGVNI---SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 48.1 bits (114), Expect = 2e-06 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 36/164 (21%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMR 94 P E++ ++GP GSGK+T+A+ + + P G V Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------- 35 Query: 95 FMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154 + ++VL L + SG R LA A KP++L+LDE Sbjct: 36 ---IDGEDILEEVLDQLLLI----IVGGKKASGSGELRLRLALALARKLKPDVLILDEIT 88 Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198 +D E L L + +L NL +++ + D Sbjct: 89 SLLDAEQEALLLLLE----ELRLLLLLKSEKNLTVILTTNDEKD 128 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 47.8 bits (114), Expect = 2e-06 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 34/220 (15%) Query: 7 ITPLISLSNTS-FHKNG---YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP 62 +T L+ L + + +G ++L+ I+ I E+V ++G +GSGKST+ ++ + KP Sbjct: 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP 60 Query: 63 TIGSVKRHPQLIV---------------GYVPQK------VTIENTLPLSLMRFMTLSMP 101 T G+ + Q + G++ Q+ +T + + + + L Sbjct: 61 TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV-YAGLERK 119 Query: 102 SSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID-FP 160 ++L R+ L + LSGG+ QR +A+AL+ +++ DEP +D Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 Query: 161 GELSLYELITSVRQ--STGCGILLISHNLHMVMASTDTVI 198 GE E++ + Q G +++++H+ V A + VI Sbjct: 180 GE----EVMAILHQLRDRGHTVIIVTHDPQ-VAAQAERVI 214 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 47.0 bits (112), Expect = 4e-06 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 54/202 (26%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-------------IAKLITGII--------KPTI 64 L D++ I + IGP+G GKST + +TG I P + Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR-VTGKITLDGEDIYDPRL 93 Query: 65 GSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLSMPSSRDDVLQI----LDR 113 V+ + VG V QK N P S+ R L+ S+ ++ +I L + Sbjct: 94 DVVELRAR--VGMVFQK---PNPFPKSIYENVAYGPRIHGLA--RSKAELDEIVETSLRK 146 Query: 114 VNLIGKYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165 L + +KD LSGG+ QR +A+A+ P ++++DEP +D + Sbjct: 147 AGLWEE----VKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202 Query: 166 YELITSVRQSTGCGILLISHNL 187 ELI +RQ+ I++++H++ Sbjct: 203 EELIDELRQNY--TIVIVTHSM 222 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 46.8 bits (111), Expect = 4e-06 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 47/221 (21%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTI------------AKLI 56 +S+ + + L+ ++ I + LIGP+G GKST A I Sbjct: 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103 Query: 57 TGII-----------------KPTIGSVKRHPQLI-------VGYVPQKV-TIENTLPLS 91 G + + +G V + P + Y P+K I L Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGL--- 160 Query: 92 LMRFMTLSMPSSRDDVLQ-ILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPN 146 L R + + D++++ L + L + N + D LSGG+ QR +A+ L P Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220 Query: 147 LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187 ++++DEP +D + +LI + + +++++HN+ Sbjct: 221 VILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTHNM 259 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 46.9 bits (111), Expect = 5e-06 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%) Query: 8 TPLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT- 63 P IS+ N F K L DIN I +V ++G G GK+++ + G + Sbjct: 612 APAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE 671 Query: 64 ------IGSVKRHPQLIVGYVPQKVTIENTL------PLSLMRFMTLSMPSSRDDVLQIL 111 GSV PQ V ++ EN L R + ++ D+L Sbjct: 672 TSSVVIRGSVAYVPQ--VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGR 729 Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 D IG+ NI SGG+ QR +A+A+ ++ + D+PL +D Sbjct: 730 DLTE-IGERGVNI---SGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 Score = 45.0 bits (106), Expect = 2e-05 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 33/224 (14%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 +L ++F + P+E V ++G G+GKS++ + I++ G + +I K + Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-----MIDDCDVAKFGL 1305 Query: 85 EN------TLPLS------LMRFMTLSMPSSRD-DVLQILDRVNLIGKYNRNIKDL---- 127 + +P S +RF D D+ + L+R ++ +RN L Sbjct: 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 Query: 128 -SGGEF----QRAL--LAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 GGE QR L LA+ALLR+ +LVLDE +D + + I +S C + Sbjct: 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS--CTM 1423 Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTI--KDNAEYIRL 222 L+I+H L+ ++ ++ + ++ PQ + +D + + R+ Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRM 1467 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 46.4 bits (110), Expect = 6e-06 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%) Query: 122 RNIKDLSGGEFQRALLAKALL---RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 R + LSGGE QR LA LL +KP L VLDEP G+ +L ++ S+ G Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GH 863 Query: 179 GILLISHNLHMVMASTDTVICL 200 +++I HN+H+V + D V+ L Sbjct: 864 TVVIIEHNMHVVKVA-DYVLEL 884 Score = 33.3 bits (76), Expect = 0.057 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%) Query: 121 NRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 R + LSGGE +R LAK L + +LDEP G+ L +I +R G Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GN 529 Query: 179 GILLISHNLHMVMASTDTVICLNNRICYQGP 209 +LL+ H+ M I L +RI GP Sbjct: 530 TVLLVEHDEQM--------ISLADRIIDIGP 552 Score = 30.6 bits (69), Expect = 0.40 Identities = 14/28 (50%), Positives = 20/28 (71%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 L++I+ P EIV L G +GSGKS++A Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSLA 43 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 45.6 bits (108), Expect = 1e-05 Identities = 16/49 (32%), Positives = 30/49 (61%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58 ++S+ + IL+ +N ++P E+ ++GPNGSGKST++ + G Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 45.6 bits (108), Expect = 1e-05 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 47/227 (20%) Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKL--------- 55 +++ ++S N + L DI +I N + LIGP+G GKST+ + Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60 Query: 56 ---ITG-----------------IIKPTIGSVKRHPQLI-------VGYVPQKVTIENTL 88 ITG ++ IG V + P V Y P+ +N Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKK 120 Query: 89 PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148 L + +L + D+V DR+ + + LSGG+ QR +A+ L P ++ Sbjct: 121 TLDTIVEKSLKGAALWDEV---KDRL------HDSALSLSGGQQQRLCIARTLAVNPEVI 171 Query: 149 VLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195 ++DEP +D + +LI +++ +++++HN+ +D Sbjct: 172 LMDEPCSALDPIATAKIEDLIEDLKKEY--TVIIVTHNMQQAARVSD 216 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 44.1 bits (104), Expect = 3e-05 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 17/187 (9%) Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69 ++SL F+ K L D++ T P+ I + G NG GKS++ ++I GI++P+ G++ Sbjct: 1 MLSLHQLQFNIEQ-KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 Query: 70 H-------PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV----NLIG 118 + Y+ + L L + F L S + + L L Sbjct: 60 KNCNINNIAKPYCTYIGHNL----GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD 115 Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 + LS G + +A+ + + +L +LDE + L LI ++ ++G Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV-MKANSGG 174 Query: 179 GILLISH 185 +LL SH Sbjct: 175 IVLLSSH 181 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 42.8 bits (101), Expect = 7e-05 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 45/195 (23%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------- 67 + IL+ ++ IKP E+ ++G GSG ST+ K I V Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP 129 Query: 68 ---KRHPQLIVGY-------VPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117 K+H + V Y P +T+ TL + P +R D + + I Sbjct: 130 EEIKKHYRGDVVYNAETDVHFPH-LTVGETLDFA----ARCKTPQNRPDGVSREEYAKHI 184 Query: 118 GKY----------------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161 N ++ +SGGE +R +A+A L + D +G+D Sbjct: 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD--- 241 Query: 162 ELSLYELITSVRQST 176 + E I +++ S Sbjct: 242 SATALEFIRALKTSA 256 Score = 40.9 bits (96), Expect = 3e-04 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 25/158 (15%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTI-----AKLITGIIKPTIGSVKRHP-----QLI 74 IL +++ +KP + L+G +G+GK+T+ ++ TG+I V P Q Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 Query: 75 VGYVPQK------VTIENTLPLS--LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD 126 +GYV Q+ T+ +L S L + ++S + V +++ + + Y + Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-ESYADAVVG 896 Query: 127 LSGG-----EFQRALLAKALLRKPNLLV-LDEPLQGID 158 + G + +R + L+ KP LL+ LDEP G+D Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 39.8 bits (93), Expect = 6e-04 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 29/161 (18%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT-----GIIKPTI---GSVKRHPQL-- 73 ++L+++ +P + L+G +G+GK+T+ ++ G I+ I G K+ Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 953 Query: 74 IVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD- 126 I GY Q +VT+ +L S F+ L S+++ + +D V + + + N+KD Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYS--AFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDA 1010 Query: 127 ---------LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 LS + +R +A L+ P+++ +DEP G+D Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 Score = 36.4 bits (84), Expect = 0.006 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSVKRHPQLIVGYVPQK 81 IL+D + IKP+ + L+GP SGK+T+ + G + P++ G + + + +VP+K Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239 Query: 82 VT 83 + Sbjct: 240 TS 241 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 37.7 bits (89), Expect = 0.002 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 127 LSGGEFQRALLAKALLRKPN---LLVLDEPLQGIDF 159 LSGGE QR LAK L ++ L +LDEP G+ F Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHF 866 Score = 29.3 bits (67), Expect = 0.86 Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 L++I+ I +++V G +GSGKS++A Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSLA 43 Score = 26.2 bits (59), Expect = 8.2 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 L++++ I + + G +GSGKST LI + + Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKST---LINETLYKAL 660 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 37.1 bits (86), Expect = 0.004 Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56 S +ISL N + ++ ++++ I ++ LIGP+G GKST+ + + Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59 Score = 37.1 bits (86), Expect = 0.004 Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178 K N + LSGG+ QR +A+ + +P ++++DEP +D L + E + ++++ Sbjct: 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF-- 204 Query: 179 GILLISHNLHMVMASTD 195 I++++HN+ + +D Sbjct: 205 TIVIVTHNMQQAVRVSD 221 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 37.1 bits (87), Expect = 0.004 Identities = 11/38 (28%), Positives = 24/38 (63%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58 ++++ I+ + E + L+GP+G GKST+ +++ G Sbjct: 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 Score = 34.4 bits (80), Expect = 0.025 Identities = 14/32 (43%), Positives = 23/32 (71%) Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158 LSGG+ QR + +A++R+P + + DEPL +D Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 34.3 bits (80), Expect = 0.026 Identities = 9/19 (47%), Positives = 15/19 (78%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 ++ + GP GSGK T+AK++ Sbjct: 6 VIAIDGPAGSGKGTVAKIL 24 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 34.3 bits (79), Expect = 0.032 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52 INF I ++GPNG GKS I Sbjct: 19 INF---DKGITGIVGPNGCGKSNI 39 Score = 32.0 bits (73), Expect = 0.13 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 8/41 (19%) Query: 118 GKYNRNIKDLSGGEFQRALLAKALL-----RKPN-LLVLDE 152 GK N+N+ LSGGE +AL A ALL KP +LDE Sbjct: 1081 GKKNQNLSLLSGGE--KALTALALLFAIFKVKPAPFCILDE 1119 >gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. Length = 325 Score = 33.3 bits (76), Expect = 0.061 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 11 ISLSNTSFHKNGYKILQDINFTIKPN--EIVTLIGPNGSGKSTIAKLITGIIKPT 63 S+S T +N ++ + I ++P + V ++G +GKST+ + + T Sbjct: 135 FSVSATQIRENPFQHWKHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTT 189 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 32.6 bits (74), Expect = 0.089 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 124 IKDLSGGEFQ------RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT-SVRQST 176 I LSGGE R +A+ L +LL++DEP +D +L ++I S++ S+ Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858 Query: 177 GC-GILLISHNLHMVMAS 193 +++ISH+ ++ + Sbjct: 859 DIPQVIMISHHRELLSVA 876 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 32.1 bits (74), Expect = 0.12 Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 39 VTLIGPNGSGKSTIAKL 55 + LIG G+GKSTI +L Sbjct: 7 IVLIGFMGAGKSTIGRL 23 >gnl|CDD|161849 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. Length = 413 Score = 31.7 bits (72), Expect = 0.18 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98 + LIGP GSGK+ +A+ + I+ GYV + V EN L L L++ Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDV--ENIL-LKLLQAADY 175 Query: 99 SMPSSRDDVLQILDRVNLIGKYNRNI---KDLSGGEFQRALL 137 + ++ ++ I D ++ I + + N +D+SG Q+ALL Sbjct: 176 DVEKAQKGIIYI-DEIDKISRKSENPSITRDVSGEGVQQALL 216 >gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. Length = 282 Score = 31.5 bits (72), Expect = 0.19 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Query: 38 IVTLIGPNGSGKST-IAKL 55 ++ L+GP G GK+T +AKL Sbjct: 196 VIALVGPTGVGKTTTLAKL 214 >gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional. Length = 180 Score = 31.3 bits (72), Expect = 0.25 Identities = 11/19 (57%), Positives = 17/19 (89%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+T+ GP GSGK+T+A+L+ Sbjct: 2 IITISGPPGSGKTTVARLL 20 >gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171 Score = 30.9 bits (70), Expect = 0.28 Identities = 11/19 (57%), Positives = 17/19 (89%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+T+ GP GSGK+T+AK++ Sbjct: 2 IITISGPPGSGKTTVAKIL 20 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 30.5 bits (69), Expect = 0.36 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 38 IVTLI-GPNGSGKSTIAKLITGI 59 I LI G +GSGK+T+A + Sbjct: 16 ITVLIDGRSGSGKTTLAGALAAR 38 >gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 424 Score = 30.2 bits (69), Expect = 0.48 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 33 IKPNEIVTLIGPNGSGKST-IAKL 55 +K +V L+GP G GK+T +AKL Sbjct: 218 LKQGGVVALVGPTGVGKTTTLAKL 241 >gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. Length = 210 Score = 29.9 bits (68), Expect = 0.60 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 39 VTLIGPNGSGKSTIAKLIT 57 + L+GP GSGK T AK I Sbjct: 2 LVLLGPPGSGKGTQAKRIA 20 >gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional. Length = 174 Score = 29.5 bits (67), Expect = 0.72 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 16/112 (14%) Query: 43 GPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS 102 GP G GK+T+ I ++ K + G+ ++V + F + + + Sbjct: 7 GPPGVGKTTLVLKIAELL-------KEEGYKVGGFYTEEVREGGK----RIGFKIIDLDT 55 Query: 103 SRDDVLQILDRVN--LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152 + +L + + +GKY N++DL L +A L + +++++DE Sbjct: 56 GEEGILARVGFPSRPRVGKYVVNLEDLE--RIGIPALERA-LEEADVIIIDE 104 >gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 655 Score = 29.6 bits (67), Expect = 0.73 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Query: 39 VTLIGPNGSGKS-TIAKLITGIIKPTI 64 TL+G GSGK+ T+A +I + +PT+ Sbjct: 32 QTLLGVTGSGKTFTMANVIAQVNRPTL 58 >gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional. Length = 336 Score = 29.6 bits (67), Expect = 0.74 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKST-IAKL 55 + ++++I KP IV +G NG+GK+T IAKL Sbjct: 128 FDLIEEIKSKGKPVVIV-FVGVNGTGKTTTIAKL 160 >gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional. Length = 1486 Score = 29.5 bits (67), Expect = 0.77 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Query: 36 NEIVTLIGPNGSGKST-IAKLITGII 60 + TL G NG+GKST +A +T +I Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALI 52 >gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed. Length = 167 Score = 29.6 bits (67), Expect = 0.81 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 39 VTLIGPNGSGKSTIAK 54 + LIG GSGKST+A+ Sbjct: 4 IILIGSGGSGKSTLAR 19 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 29.5 bits (67), Expect = 0.83 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 38 IVTLIGPNGSGKSTIA 53 IV + GP G+GKST+A Sbjct: 35 IVGIAGPPGAGKSTLA 50 >gnl|CDD|172375 PRK13851, PRK13851, type IV secretion system protein VirB11; Provisional. Length = 344 Score = 29.5 bits (66), Expect = 0.84 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%) Query: 41 LIGPNGSGKSTIAK-LITGI--------IKPTIGSVKRHPQLIV------GYVPQKVTIE 85 L GP GSGK+T++K LI+ I I+ T+ V H + G VT E Sbjct: 167 LCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAE 226 Query: 86 NTLPLSL-MRFMTLSMPSSRDD 106 + L SL MR + + RDD Sbjct: 227 HLLQASLRMRPDRILLGEMRDD 248 >gnl|CDD|178665 PLN03118, PLN03118, Rab family protein; Provisional. Length = 211 Score = 29.3 bits (65), Expect = 0.88 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 18/93 (19%) Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------IKPTIGS 66 + ++S +GY D++F I LIG +G GKS++ L++ I + PTIG Sbjct: 1 MGSSSGQSSGY----DLSFKI------LLIGDSGVGKSSL--LVSFISSSVEDLAPTIGV 48 Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS 99 + QL VG K+TI +T R +T S Sbjct: 49 DFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSS 81 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 29.1 bits (66), Expect = 1.0 Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ + GP G+GKST+ + + Sbjct: 286 IIAIDGPAGAGKSTVTRAV 304 >gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain. Length = 499 Score = 29.0 bits (65), Expect = 1.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 41 LIGPNGSGKSTIAKLITGIIKP 62 L GP GSGK+ +A + GI+ P Sbjct: 216 LFGPPGSGKTMLASRLQGILPP 237 >gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633 Score = 28.9 bits (65), Expect = 1.1 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 29/125 (23%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQLIVGYVPQKVTIENTLPL 90 V + G G+ KST A+ + ++ P I V P+ +K P Sbjct: 28 VLIRGEKGTAKSTAARGLAALL-PPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRP- 85 Query: 91 SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD-LSGGE--FQRALLAKALLRKPNL 147 + F+ L + ++ D V+ LD I+ L GE FQ LLA+A + Sbjct: 86 --VPFVNLPLGATEDRVVGSLD-----------IERALREGEKAFQPGLLAEA---HRGI 129 Query: 148 LVLDE 152 L +DE Sbjct: 130 LYIDE 134 >gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional. Length = 318 Score = 28.9 bits (66), Expect = 1.2 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Query: 34 KPNEIVTLIGPNGSGK-STIAKL 55 KP ++ ++G NG GK +TI KL Sbjct: 113 KPF-VILVVGVNGVGKTTTIGKL 134 >gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase. Length = 244 Score = 29.1 bits (65), Expect = 1.2 Identities = 13/33 (39%), Positives = 23/33 (69%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56 ++L+ + + KP++ + LIGP GSGK T + +I Sbjct: 19 ELLRRMKCSSKPDKRLILIGPPGSGKGTQSPII 51 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 28.9 bits (65), Expect = 1.3 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52 I F+ + GPNGSGKS I Sbjct: 19 IPFS---KGFTVISGPNGSGKSNI 39 >gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors. Length = 217 Score = 28.5 bits (64), Expect = 1.4 Identities = 10/19 (52%), Positives = 16/19 (84%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ + GP+G+GKST+AK + Sbjct: 4 IIAIDGPSGAGKSTVAKAV 22 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 28.8 bits (64), Expect = 1.4 Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 1/19 (5%) Query: 38 IVTLIGPNGSGK-STIAKL 55 ++ L+GP G+GK +TIAKL Sbjct: 352 VIALVGPTGAGKTTTIAKL 370 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 28.7 bits (65), Expect = 1.5 Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 33 IKPNEIVTLIGPNGSGKSTIA 53 + + V L+G +G GKST+ Sbjct: 192 LSGGKTVALLGSSGVGKSTLV 212 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 28.4 bits (63), Expect = 1.8 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT 57 YK I+FT I + G G+GK+T+ IT Sbjct: 12 GSYKGTHTIDFTALGP-IFLICGKTGAGKTTLLDAIT 47 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 28.5 bits (65), Expect = 1.8 Identities = 8/14 (57%), Positives = 13/14 (92%) Query: 43 GPNGSGKSTIAKLI 56 GP G+GK+T+A++I Sbjct: 43 GPPGTGKTTLARII 56 >gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441 Score = 28.2 bits (63), Expect = 1.8 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 + P I+ +IGP G GK+ IA+ + + V+ VGYV + V Sbjct: 45 VTPKNIL-MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional. Length = 213 Score = 28.1 bits (62), Expect = 1.9 Identities = 12/41 (29%), Positives = 24/41 (58%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65 +L +F + +E + ++ GSGK+T+ +L+ G+ P G Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 >gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed. Length = 172 Score = 28.1 bits (63), Expect = 2.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 41 LIGPNGSGKSTIAK 54 L+GP G+GKSTI + Sbjct: 9 LVGPMGAGKSTIGR 22 >gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional. Length = 506 Score = 28.0 bits (62), Expect = 2.0 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 41 LIGPNGSGKSTIAKLITGIIKP 62 LIGP G+GK+ +A I G++ Sbjct: 215 LIGPPGTGKTMLASRINGLLPD 236 >gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed. Length = 725 Score = 28.1 bits (63), Expect = 2.1 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Query: 32 TIKPNEIVTLI--GPNGSGKSTIAKLI 56 IK + + +LI GP G GK+T+A++I Sbjct: 46 AIKADRVGSLILYGPPGVGKTTLARII 72 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 27.9 bits (62), Expect = 2.4 Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%) Query: 40 TLI-GPNGSGKSTIAKLI 56 TLI GP GSGKST+ LI Sbjct: 459 TLIFGPTGSGKSTLLALI 476 >gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional. Length = 432 Score = 28.0 bits (62), Expect = 2.4 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%) Query: 37 EIVTLIGPNGSGKST-IAKL 55 ++V +GP GSGK+T IAKL Sbjct: 224 KVVFFVGPTGSGKTTSIAKL 243 >gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. Length = 495 Score = 27.6 bits (62), Expect = 2.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 39 VTLIGPNGSGKSTIAKLITG 58 V L+GP G+GK+ +AK + G Sbjct: 91 VLLVGPPGTGKTLLAKAVAG 110 >gnl|CDD|162629 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. Length = 1283 Score = 27.8 bits (62), Expect = 2.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST 51 +DI I N++V + G GSGK+T Sbjct: 73 EDIAEAIAENQVVIIAGETGSGKTT 97 >gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional. Length = 191 Score = 27.8 bits (62), Expect = 2.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 32 TIKPNEIVTLIGPNGSGKSTIAK 54 T N++V +GP G+GK T A+ Sbjct: 2 TQTKNKVVIFLGPPGAGKGTQAE 24 >gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 361 Score = 27.6 bits (62), Expect = 3.0 Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ L+GP G GKS++ + + Sbjct: 80 ILYLLGPVGGGKSSLVECL 98 >gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed. Length = 215 Score = 27.4 bits (62), Expect = 3.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 41 LIGPNGSGKSTIAKLIT 57 L+GP G+GK T AK I Sbjct: 5 LLGPPGAGKGTQAKFIA 21 >gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional. Length = 211 Score = 27.5 bits (61), Expect = 3.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 39 VTLIGPNGSGKSTIAKLITG 58 + +GP GSGK TIAK+++ Sbjct: 3 LVFLGPPGSGKGTIAKILSN 22 >gnl|CDD|179638 PRK03731, aroL, shikimate kinase II; Reviewed. Length = 171 Score = 27.6 bits (62), Expect = 3.1 Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 36 NEIVTLIGPNGSGKSTIAKL 55 + + L+G G GK+T+ Sbjct: 2 TQPLFLVGARGCGKTTVGMA 21 >gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated. Length = 205 Score = 27.5 bits (62), Expect = 3.1 Identities = 8/18 (44%), Positives = 14/18 (77%) Query: 39 VTLIGPNGSGKSTIAKLI 56 +T+ G +G+GKST +L+ Sbjct: 6 ITIEGIDGAGKSTQIELL 23 >gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated. Length = 226 Score = 27.3 bits (61), Expect = 3.2 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74 P+ +V L GP GSGK+ +A I + ++ HP I Sbjct: 43 PSPVVVLAGPVGSGKTHLA----SIWREKSDALLIHPNEI 78 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 27.3 bits (61), Expect = 3.7 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52 + F N I IG NGSGKS+I Sbjct: 19 VEFDDGINLI---IGQNGSGKSSI 39 >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional. Length = 438 Score = 27.4 bits (61), Expect = 3.7 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 33 IKPNEIVTLIGPNGSGKSTIAK 54 IKP + V L GP G+GK+ +AK Sbjct: 214 IKPPKGVILYGPPGTGKTLLAK 235 >gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. Length = 343 Score = 27.3 bits (61), Expect = 3.8 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 34 KPNEIVTLIGPNGSGKST-IAKLI 56 +P ++ + GP GSGKST +A +I Sbjct: 120 RPRGLILVTGPTGSGKSTTLASMI 143 >gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional. Length = 171 Score = 27.4 bits (61), Expect = 3.8 Identities = 9/18 (50%), Positives = 15/18 (83%) Query: 39 VTLIGPNGSGKSTIAKLI 56 + +IG +GSGKST+A+ + Sbjct: 3 IAIIGYSGSGKSTLARKL 20 >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional. Length = 863 Score = 27.0 bits (59), Expect = 4.0 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 I+ L GP GSGKS++ +L+ Sbjct: 36 IIALDGPAGSGKSSVCRLL 54 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 27.3 bits (61), Expect = 4.0 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 14/53 (26%) Query: 3 NALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIV--TLI-GPNGSGKSTI 52 AL++ L + S T F NF ++ +++ TLI GP GSGK+T+ Sbjct: 409 PALTL--LKTQSGTPF---------YFNFHVRDAKVLGHTLIFGPTGSGKTTL 450 >gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional. Length = 253 Score = 27.1 bits (61), Expect = 4.1 Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 38 IVTLIGPNGSGKSTIAK 54 IV +G GSGK+T+ K Sbjct: 4 IVFFLGTAGSGKTTLTK 20 >gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. Length = 428 Score = 27.3 bits (61), Expect = 4.1 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55 +N KP ++ ++G GSGK+T KL Sbjct: 90 ASLNLAKKPPTVILMVGLQGSGKTTTCGKL 119 >gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 Score = 27.2 bits (61), Expect = 4.2 Identities = 9/14 (64%), Positives = 10/14 (71%) Query: 41 LIGPNGSGKSTIAK 54 L+G SGKSTI K Sbjct: 26 LLGAGESGKSTILK 39 >gnl|CDD|163401 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. Length = 512 Score = 27.0 bits (60), Expect = 4.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 31 FTIKPNEIVTLIGPNGSGKSTIAK 54 + +KP + V L GP G GK+ IAK Sbjct: 211 YDLKPPKGVLLYGPPGCGKTLIAK 234 >gnl|CDD|161686 TIGR00064, ftsY, signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. Length = 272 Score = 27.2 bits (61), Expect = 4.4 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%) Query: 34 KPNEIVTLIGPNGSGK-STIAKL 55 KPN I+ +G NG GK +TIAKL Sbjct: 71 KPNVIL-FVGVNGVGKTTTIAKL 92 >gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 139 Score = 26.9 bits (60), Expect = 4.5 Identities = 9/22 (40%), Positives = 15/22 (68%) Query: 39 VTLIGPNGSGKSTIAKLITGII 60 V L+GP G+GKS +A+ + + Sbjct: 2 VLLVGPPGTGKSELAERLAAAL 23 >gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. Length = 650 Score = 27.0 bits (60), Expect = 4.5 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 27 QDINFTIKPNEIVTLIGP-NGSGKST 51 Q + + + + LIG NG+GK+T Sbjct: 18 QTFDLSPSSPKPIILIGGLNGAGKTT 43 >gnl|CDD|182188 PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional. Length = 258 Score = 26.8 bits (59), Expect = 4.6 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%) Query: 138 AKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGCGILLISHNL-HMVMAS-- 193 A +L K ++L+L EP+ D PG L+ + GC L I +++ HM Sbjct: 129 AANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGE 188 Query: 194 -TDTVICLNNRICY--------QGPPQTIKDNAEYI 220 T+T+ ++I + +G P T + N +Y+ Sbjct: 189 LTNTMTQWADKIGHLQIADNPHRGEPGTGEINYDYL 224 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 27.0 bits (61), Expect = 4.8 Identities = 6/15 (40%), Positives = 10/15 (66%) Query: 38 IVTLIGPNGSGKSTI 52 + L+G NG GK+ + Sbjct: 25 VNVLVGENGQGKTNL 39 >gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional. Length = 412 Score = 27.0 bits (61), Expect = 4.8 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 8/43 (18%) Query: 21 NGYKILQDINFTIKPNEI----VTLIGPNGSGKS----TIAKL 55 N YK L+ + E+ + LIGP GSGK+ T+A++ Sbjct: 89 NHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 >gnl|CDD|177578 PHA03293, PHA03293, deoxyribonuclease; Provisional. Length = 523 Score = 27.0 bits (60), Expect = 4.9 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 178 CGILLISHNLHMVMASTDTVICLNNRICYQGPPQT--------IKDNAEYIRLFGTRATE 229 CG LLI MV AS D ++C + P T IK A+Y F Sbjct: 234 CG-LLIDARTGMVGASLDMLVCDRDPHGVLAPHPTQTTLEFFEIKCRAKY--AFPPDDGS 290 Query: 230 ILA 232 L+ Sbjct: 291 PLS 293 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 26.8 bits (59), Expect = 5.0 Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64 P I+ + GP+G GKST K+++ + + Sbjct: 108 APKRILLITGPSGCGKSTTIKILSKELGIQV 138 >gnl|CDD|162267 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 Score = 26.8 bits (59), Expect = 5.6 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56 I+P + V L GP G+GK+ +AK + Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAV 232 Score = 26.4 bits (58), Expect = 6.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56 I+P + V L GP G+GK+ +AK + Sbjct: 484 IRPPKGVLLFGPPGTGKTLLAKAV 507 >gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. Length = 163 Score = 26.6 bits (59), Expect = 5.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Query: 41 LIGPNGSGKSTIAK 54 L+G GSGKSTIA Sbjct: 3 LMGVAGSGKSTIAS 16 >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed. Length = 644 Score = 26.5 bits (58), Expect = 6.1 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 39 VTLIGPNGSGKSTIAKLITGIIK 61 V ++GP G+GK+ +AK I G K Sbjct: 188 VLMVGPPGTGKTLLAKAIAGEAK 210 >gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional. Length = 205 Score = 26.6 bits (60), Expect = 6.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Query: 43 GPNGSGKSTIAKLI 56 GP+G+GKST+ K + Sbjct: 12 GPSGAGKSTLVKAL 25 >gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. Length = 486 Score = 26.2 bits (58), Expect = 7.0 Identities = 9/18 (50%), Positives = 14/18 (77%) Query: 34 KPNEIVTLIGPNGSGKST 51 +P+ I+ + GP GSGK+T Sbjct: 240 RPHGIILVTGPTGSGKTT 257 >gnl|CDD|116881 pfam08298, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 358 Score = 26.3 bits (58), Expect = 7.9 Identities = 9/20 (45%), Positives = 16/20 (80%) Query: 37 EIVTLIGPNGSGKSTIAKLI 56 +I+ L+GP G GKS++A+ + Sbjct: 86 QILYLLGPVGGGKSSLAERL 105 >gnl|CDD|178575 PLN02996, PLN02996, fatty acyl-CoA reductase. Length = 491 Score = 26.2 bits (58), Expect = 8.2 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 26/107 (24%) Query: 17 SFHKNGYKI--LQDIN---FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71 S KN K L D F+ P I GS K+ G I T+ S + Sbjct: 338 SSLKNPVKFSNLHDFAYRYFSKNP-----WINKEGS----PVKVGKGTILSTMASFSLY- 387 Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR-VNLI 117 +TI LPL ++ + + +P D L+R + L+ Sbjct: 388 ----------MTIRYLLPLKALQLVNIILPKRYGDKYTDLNRKIKLV 424 >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional. Length = 1294 Score = 26.2 bits (58), Expect = 8.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST 51 QDI I+ +++V + G GSGK+T Sbjct: 80 QDILEAIRDHQVVIVAGETGSGKTT 104 >gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional. Length = 209 Score = 25.9 bits (58), Expect = 8.8 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 43 GPNGSGKSTIAKLITGIIKP 62 G +GSGK+T+A I + Sbjct: 13 GGSGSGKTTVASTIYEELGD 32 >gnl|CDD|182793 PRK10867, PRK10867, signal recognition particle protein; Provisional. Length = 433 Score = 26.2 bits (59), Expect = 8.8 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55 ++N KP ++ ++G G+GK+T KL Sbjct: 91 SELNLAAKPPTVIMMVGLQGAGKTTTAGKL 120 >gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional. Length = 259 Score = 25.8 bits (57), Expect = 9.0 Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 33 IKPNEIVTLIGPNGSGKSTIA 53 I+ NE + L+GP+G GK+ +A Sbjct: 99 IERNENIVLLGPSGVGKTHLA 119 >gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 484 Score = 26.1 bits (58), Expect = 9.1 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%) Query: 41 LIGPNGSGK-STIAKL 55 L+GP G GK +T AKL Sbjct: 261 LMGPTGVGKTTTTAKL 276 >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal. Length = 364 Score = 25.9 bits (57), Expect = 9.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 I+P + V L GP G+GK+ +AK + T Sbjct: 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional. Length = 632 Score = 26.0 bits (58), Expect = 9.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 38 IVTLIGPNGSGKSTIAKLI 56 V G +GSGKSTIA L+ Sbjct: 462 TVWFTGLSGSGKSTIANLV 480 >gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment. Length = 184 Score = 25.9 bits (57), Expect = 9.5 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 38 IVTLIGPNGSGKSTIA 53 ++ L G +GSGKSTIA Sbjct: 20 VIWLTGLSGSGKSTIA 35 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,817,478 Number of extensions: 240504 Number of successful extensions: 1227 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1126 Number of HSP's successfully gapped: 490 Length of query: 240 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 149 Effective length of database: 4,028,145 Effective search space: 600193605 Effective search space used: 600193605 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.5 bits)