BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc
uptake system ATP-binding component of ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
(240 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 488 bits (1255), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII
Sbjct: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY
Sbjct: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI
Sbjct: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240
LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH
Sbjct: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 97.4 bits (241), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 20/239 (8%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
+ NGY L+D+N I N I LIG NG+GKST+ + I G+I GS+ Q +
Sbjct: 21 YPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENAL 80
Query: 75 ----VGYVPQKVTIENTLP--------LSLMRFMTLSMPSSRDD---VLQILDRVNLIGK 119
+ Y+PQ +I+ T P + + M +S +D V + L+ V +
Sbjct: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
R I +LS G+ +R LA+AL +K ++++DEP IDF E + L+ S+
Sbjct: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIM 199
Query: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238
IL+ +HN++ + + D I L + G I + + FG + + +I N +
Sbjct: 200 ILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFGAQVSPQSSILNESN 258
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 94.0 bits (232), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 19/240 (7%)
Query: 2 SNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
N S L+S + + N +++ ++ +KP EIV L+GPNG+GK+T ++TG+I
Sbjct: 17 ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76
Query: 62 PTIGSVK------------RHPQLIVGYVPQKVTIENTLP-----LSLMRFMTLSMPSSR 104
GS+K R +L + Y+PQ+ +I L L+++
Sbjct: 77 ADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRH 136
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+ + +L N+ + LSGG+ +R +A++L+ P+ ++LDEP G+D P +S
Sbjct: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD-PVAIS 195
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEYIRLF 223
++ S G GIL+ HN+H ++ D ++ + G Q I DN + RL+
Sbjct: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 81.3 bits (199), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 20/204 (9%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
P++ L + S G +LQD+ +IKP E + L+G NGSGKST+ K+ GI +P G+V
Sbjct: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYN---- 121
H +GY+ Q L F T+S + +D + +L+ K+N
Sbjct: 64 LHSSSRLGYLEQNP--------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
I++LS G+ + L K L+ +P++L+LDEP +DF + + + + ++
Sbjct: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALI 171
Query: 182 LISHNLHMVMASTDTVICLNNRIC 205
+SH+ + + T + L +R C
Sbjct: 172 FVSHDRRFLETLSTTTVWL-DRGC 194
Score = 75.5 bits (184), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
+++D + I E + ++GPNG+GK+T+ KL+TG IKP G + L + + QK
Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR-- 356
Query: 85 ENTLP-LSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN-----------IKDLSGGEF 132
E+ P SL ++T S D L + + Y ++ +K LSGGE
Sbjct: 357 EDIDPDKSLASYLT----GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412
Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
RA++A+ L + N L++DEP +DF L IT ++ + IL++SH+ +
Sbjct: 413 MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT----ILIVSHDRDFLDR 468
Query: 193 STDTVICLNN 202
+ + I N
Sbjct: 469 TVTSTIAAQN 478
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 15/200 (7%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI---- 84
+F + E + ++GP+G+GKST+ L+ G PT GS+ + Q P K +
Sbjct: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77
Query: 85 -ENTLPLSLMRFMTLSM---PSSRDD------VLQILDRVNLIGKYNRNIKDLSGGEFQR 134
EN L L + +++ P+ R D V Q+L++V L +NR +SGG+ QR
Sbjct: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQR 137
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA-S 193
LA+ L+R+ +L+LDEP D + L+ V +L+ISHNL M +
Sbjct: 138 VALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIA 197
Query: 194 TDTVICLNNRICYQGPPQTI 213
T ++ +I Y G P +
Sbjct: 198 TRFIVIAGGQIVYDGDPDRL 217
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 70.5 bits (171), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
+K G+ +L IN K ++ L+GP+GSGKSTI L+ + P+ GS++ I
Sbjct: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
Query: 75 -------VGYVPQKVTI-ENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN-------LIG 118
+ YV Q V + NT+ +++ + P ++ +++++I N L
Sbjct: 422 FSSLRERISYVGQDVFLFSNTVRYNIL----IGRPMATEEEMIEIAKSANAHDFIMSLPQ 477
Query: 119 KYN----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
Y+ N +LSGG+ QR +A+A+LR ++LVLDE +D E + + ++ + Q
Sbjct: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
Query: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI---KDNAEYIRLFGTRATEIL 231
G ++I+H + ++ + + + ++ G + + KD + Y +++ ++ E L
Sbjct: 538 --GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595
Query: 232 A 232
+
Sbjct: 596 S 596
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 69.3 bits (168), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLI--- 74
+L +NF + EIV L+G +GSGKST+ ++I G++ P+ G V K P+ I
Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
Query: 75 ---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
P +EN + L L + + R L +D + L G + + ++SGG
Sbjct: 92 FQTFALFPWLTVLEN-VELGL-KAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149
Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG------ILLISH 185
QR A+A + P+LL++DEP +D L+ L T + G +L+++H
Sbjct: 150 LQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTH 206
Query: 186 NLHMVMASTDTVICLNN 202
N+ + D V+ ++
Sbjct: 207 NIEEAVLMCDRVLVFSS 223
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 64.7 bits (156), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-PTIGSVKRHPQLI------- 74
+ +L++++ ++K EIV L+ P+G+GKSTI I G+++ P G+V QL
Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
Query: 75 --------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
+G+V Q+ IEN + ++ + R + +L +++
Sbjct: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR--AMDLLSYMDMSQY 139
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
NR D+SGGE QR + +A+ KP +++ DEP +D ++ ++ + +G
Sbjct: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
Query: 180 ILLISHNLHMVMASTDTVICLNN 202
L+ +HN H + + D I + +
Sbjct: 200 ALIATHN-HDLASQMDRQITIRD 221
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 62.8 bits (151), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 11 ISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+S + SF K+ IL+++NFT++P E + L+G +G+GK++I LI P GSV
Sbjct: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ----ILD 112
+ + + +VPQ + + S+ + + P + +Q +
Sbjct: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNIAIGCPHATRKEIQNAAMLAQ 404
Query: 113 RVNLIG----KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
IG Y+ + D LS G+ QR +A+A+L+ +L+LDE +D E
Sbjct: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRI 204
+++++ R+ G + SH L + D V L++++
Sbjct: 465 IWKVLREQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQV 501
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 62.8 bits (151), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 40/221 (18%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ--- 80
K+L DIN + P+ + ++GPNG+GKSTI +++ GI K G VGY+PQ
Sbjct: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79
Query: 81 ----KVTIENTLP------LSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYNR----- 122
K EN + L R+ L M + +++ ++ D ++ G ++
Sbjct: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139
Query: 123 -------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
NI LSGGE +R L K LL P+LL+LDEP +D ++ +
Sbjct: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWME 196
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLN--NRICYQG 208
+R+ +G +L+++H+ + + T+ ++ ++ I YQG
Sbjct: 197 KYLREYSGA-VLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
Score = 62.4 bits (150), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
++ +++F + P IV +IGPNG+GK+T+ +++TG P G++ + + YV Q
Sbjct: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388
Query: 85 ENTLPLSLMRFMTLSMPSSRDDVLQI----------LDRVNLI-GKYNRNIKDLSGGEFQ 133
++L + + S DD++++ N G + I LSGG+
Sbjct: 389 RDSLEAEKTVWEDI---SGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRG 445
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
R LAK L N+++LDEP +D +L L ++ GC + +ISH+
Sbjct: 446 RVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALENFAGCAV-IISHD 494
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 62.4 bits (150), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---RHPQLIVGYVPQKVTIENTLPL--- 90
EI+ +IG +G+GKS + + I G+I G VK H L G Q L +
Sbjct: 40 EILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKG--KQNFAFSAKLGVLFQ 97
Query: 91 --SLMRFMT----LSMPSSRD-----DVLQ--ILDRVNLIG----KYNRNIKDLSGGEFQ 133
+L MT +SMP D+++ + ++ ++G N LSGG +
Sbjct: 98 HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIK 157
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193
R LA+AL P+LL LDEP G+D +L+ +R S G + +I+H+L+ ++++
Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIST 217
Query: 194 TDTVICLNNR-ICYQGPPQTIKD-NAEYIRLFGTRATE 229
+ V + + I +G I D N +IR + R T+
Sbjct: 218 CNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRFTK 255
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 59.3 bits (142), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
+ L+DIN + E V + GP+GSGKST+ + I I K G ++I+ +P
Sbjct: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG------EIIINGIPLND 83
Query: 83 TIENTLP-----------------LSLMRFMTL------SMP--SSRDDVLQILDRVNLI 117
I N LS++ TL MP + + + L++V +
Sbjct: 84 DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
K +R+ LSGGE QRA +A++L +P +++ DEP +D + +++ + + G
Sbjct: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202
Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
++ ++H + D V+ ++ +I Q P+ +N ++ R
Sbjct: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 40/198 (20%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LITG--------IIKPT 63
+ L DIN I N + LIGP+G GKST + + TG I + +
Sbjct: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79
Query: 64 IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQILDRVNLIG 118
+ V+ + VG V Q+ N P S+ + + +++ D+ QI++
Sbjct: 80 VDVVRLRAR--VGMVFQR---PNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
Query: 119 KYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
+KD LSGG+ QR +A+AL P ++++DEP +D S+ ELI
Sbjct: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
Query: 171 SVRQSTGCGILLISHNLH 188
+R+S I++++H++
Sbjct: 195 ELRESL--TIVIVTHSMQ 210
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 48/224 (21%)
Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSV 67
I +N SF N + I + I+F I P++ LIG +G GKST+AKL+ + IK I ++
Sbjct: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
Query: 68 ---------KRHPQLIVGYVPQKVTIEN---------------------TLPLSLMRFMT 97
K + +G +PQ + N + ++ ++
Sbjct: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
Query: 98 LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
+ +P+ D V +G+ R +K LSGGE QR +A+A+L+ P +++ DE +
Sbjct: 477 MKLPNGYDTV---------VGE--RGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
D E + + ++ ++ L+I+H L + D +I +
Sbjct: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTI-TDADNIIVFD 565
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 51.2 bits (121), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------KRH 70
N +K EI+ L+G +G+GKST+ + I G+ G V ++
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
Query: 71 PQLIVGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124
V V Q+ T+ + L L F+ + + V + L+ VNL + I
Sbjct: 109 RMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
LSGG QR A+A +L++DEP +D + L + + ++++ I+ +S
Sbjct: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
Query: 185 HNLHMVMASTDTVICLN-NRICYQGPPQTI 213
H+++ + + + RI G PQ I
Sbjct: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 48.9 bits (115), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPTIGSVKRHPQLIVGY---- 77
+I++ +N ++P+E+V ++GPNGSGKST++ L++G + T G + + I+ +
Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
Query: 78 -VPQKVTIENTLPLS-----LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL---- 127
+ + + P+ +M+F+ +++ R + + LI + R ++ +
Sbjct: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---KELLIPDFTRKVRKITAEL 133
Query: 128 ---------------SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
SGGE + A + + L +P+L +LDE G+D + + ++
Sbjct: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
Query: 173 RQSTGCGILLISHNLHMV-MASTDTVICLNN 202
R S L+I+H ++ DT+ L+N
Sbjct: 194 R-SQDRSFLIITHYQRLLNYIKPDTIHVLHN 223
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 40.4 bits (93), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKP---NLLVLDEPLQGIDFPGELSLYELITSVRQS 175
K ++ LSGGE QR LAK L ++ L +LDEP G+ + L ++ ++
Sbjct: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
Query: 176 TGCGILLISHNLHMVMASTDTVICL-------NNRICYQGPPQTI 213
G I++I HNL V+ + D ++ I GPP+ I
Sbjct: 898 -GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
LQ+I+ + N+++ + G +GSGKS++A
Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 39.7 bits (91), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 31/198 (15%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
I Q+++FTI + GP+G GKS + G++ G++ + I
Sbjct: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
Query: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE-- 131
+GY+ Q ++ P+S+ + L S + L I + I + +I L G
Sbjct: 407 QIGYLSQHCSL---FPISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
Query: 132 -----------FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
Q+ L++ + P +L++DEPL +D + + Y L+ +++ I
Sbjct: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT-I 519
Query: 181 LLISHNLHMVMASTDTVI 198
++ISH+ ++ S ++I
Sbjct: 520 VIISHDPTIISMSDFSLI 537
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98
+ L+GP G GK+ +A+ + II GYV + V EN + L L++
Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV--ENII-LKLLQAADY 172
Query: 99 SMPSSRDDVLQILDRVNLIGKYNRN---IKDLSGGEFQRALL 137
++ ++ ++ I D V+ I + + N +D+SG Q+ALL
Sbjct: 173 NVERAQRGIVYI-DEVDKISRKSDNPSITRDVSGEGVQQALL 213
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 31.6 bits (70), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
P+ +V L+GP+GSGKS +A + + + T
Sbjct: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST 91
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 26.2 bits (56), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 106 DVLQILDRVNLIGKYNRNI-KDLSGGEFQ-------RALLAKALLRKPNLLVLDEPLQGI 157
D L ++D +++ K R++ D F+ R K LL PN LV+DE ++G+
Sbjct: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--PNYLVIDESMEGV 59
Query: 158 DFPGELSLYELITSVRQ 174
E I VRQ
Sbjct: 60 --------LEFIAHVRQ 68
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 25.4 bits (54), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73
I LIG +G GK+TIAK + ++ P +G R P++
Sbjct: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRV 42
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 39 VTLIGPNGSGKSTIAKLITG 58
V L+GP G+GK+ +A+ + G
Sbjct: 184 VLLVGPPGTGKTLLARAVAG 203
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 437
Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
D+ + P I+ L+GP G GK+ I++ + + V+ +GYV + V
Sbjct: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73
I LIG +G G++TIAK + ++ P +G R P++
Sbjct: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMP-VGVTTRRPRV 42
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 199
Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
I+ L G G+GK+T+A+ + P I S
Sbjct: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISS 31
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 39 VTLIGPNGSGKSTIAKLIT 57
V +GP G GK+T+A+++
Sbjct: 57 VLFVGPPGLGKTTLAQVVA 75
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 38 IVTLIGPNGSGKSTIA 53
IV + GP SGK+T+A
Sbjct: 69 IVEIYGPESSGKTTLA 84
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 22.3 bits (46), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 38 IVTLIGPNGSGKSTIAKLI---TG--IIKPTIGSV------KRHPQLIVGYVPQKV 82
I+ +GP G GK+++A+ I TG ++ ++G V + H + +G +P ++
Sbjct: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRI 423
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 22.3 bits (46), Expect = 8.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLI 56
K + + G GSGKST+ LI
Sbjct: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 21.9 bits (45), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 27 QDINFTIKPNEIVTLIG 43
Q INF +K N+I+T G
Sbjct: 96 QGINFLLKKNKIITYHG 112
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,437
Number of Sequences: 1233
Number of extensions: 6017
Number of successful extensions: 77
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 44
length of query: 240
length of database: 328,796
effective HSP length: 71
effective length of query: 169
effective length of database: 241,253
effective search space: 40771757
effective search space used: 40771757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)