BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (240 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 488 bits (1255), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII Sbjct: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60 Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY Sbjct: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120 Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI Sbjct: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH Sbjct: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 97.4 bits (241), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 20/239 (8%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74 + NGY L+D+N I N I LIG NG+GKST+ + I G+I GS+ Q + Sbjct: 21 YPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENAL 80 Query: 75 ----VGYVPQKVTIENTLP--------LSLMRFMTLSMPSSRDD---VLQILDRVNLIGK 119 + Y+PQ +I+ T P + + M +S +D V + L+ V + Sbjct: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 R I +LS G+ +R LA+AL +K ++++DEP IDF E + L+ S+ Sbjct: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIM 199 Query: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238 IL+ +HN++ + + D I L + G I + + FG + + +I N + Sbjct: 200 ILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFGAQVSPQSSILNESN 258 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 94.0 bits (232), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 19/240 (7%) Query: 2 SNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61 N S L+S + + N +++ ++ +KP EIV L+GPNG+GK+T ++TG+I Sbjct: 17 ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76 Query: 62 PTIGSVK------------RHPQLIVGYVPQKVTIENTLP-----LSLMRFMTLSMPSSR 104 GS+K R +L + Y+PQ+ +I L L+++ Sbjct: 77 ADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRH 136 Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 + + +L N+ + LSGG+ +R +A++L+ P+ ++LDEP G+D P +S Sbjct: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD-PVAIS 195 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEYIRLF 223 ++ S G GIL+ HN+H ++ D ++ + G Q I DN + RL+ Sbjct: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 81.3 bits (199), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 20/204 (9%) Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68 P++ L + S G +LQD+ +IKP E + L+G NGSGKST+ K+ GI +P G+V Sbjct: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63 Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYN---- 121 H +GY+ Q L F T+S + +D + +L+ K+N Sbjct: 64 LHSSSRLGYLEQNP--------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115 Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181 I++LS G+ + L K L+ +P++L+LDEP +DF + + + + ++ Sbjct: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALI 171 Query: 182 LISHNLHMVMASTDTVICLNNRIC 205 +SH+ + + T + L +R C Sbjct: 172 FVSHDRRFLETLSTTTVWL-DRGC 194 Score = 75.5 bits (184), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 22/190 (11%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 +++D + I E + ++GPNG+GK+T+ KL+TG IKP G + L + + QK Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR-- 356 Query: 85 ENTLP-LSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN-----------IKDLSGGEF 132 E+ P SL ++T S D L + + Y ++ +K LSGGE Sbjct: 357 EDIDPDKSLASYLT----GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412 Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192 RA++A+ L + N L++DEP +DF L IT ++ + IL++SH+ + Sbjct: 413 MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT----ILIVSHDRDFLDR 468 Query: 193 STDTVICLNN 202 + + I N Sbjct: 469 TVTSTIAAQN 478 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 15/200 (7%) Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI---- 84 +F + E + ++GP+G+GKST+ L+ G PT GS+ + Q P K + Sbjct: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77 Query: 85 -ENTLPLSLMRFMTLSM---PSSRDD------VLQILDRVNLIGKYNRNIKDLSGGEFQR 134 EN L L + +++ P+ R D V Q+L++V L +NR +SGG+ QR Sbjct: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQR 137 Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA-S 193 LA+ L+R+ +L+LDEP D + L+ V +L+ISHNL M + Sbjct: 138 VALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIA 197 Query: 194 TDTVICLNNRICYQGPPQTI 213 T ++ +I Y G P + Sbjct: 198 TRFIVIAGGQIVYDGDPDRL 217 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 70.5 bits (171), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 33/241 (13%) Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74 +K G+ +L IN K ++ L+GP+GSGKSTI L+ + P+ GS++ I Sbjct: 362 YKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421 Query: 75 -------VGYVPQKVTI-ENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN-------LIG 118 + YV Q V + NT+ +++ + P ++ +++++I N L Sbjct: 422 FSSLRERISYVGQDVFLFSNTVRYNIL----IGRPMATEEEMIEIAKSANAHDFIMSLPQ 477 Query: 119 KYN----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174 Y+ N +LSGG+ QR +A+A+LR ++LVLDE +D E + + ++ + Q Sbjct: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537 Query: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI---KDNAEYIRLFGTRATEIL 231 G ++I+H + ++ + + + ++ G + + KD + Y +++ ++ E L Sbjct: 538 --GRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQLLENL 595 Query: 232 A 232 + Sbjct: 596 S 596 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 69.3 bits (168), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 24/197 (12%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLI--- 74 +L +NF + EIV L+G +GSGKST+ ++I G++ P+ G V K P+ I Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 Query: 75 ---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131 P +EN + L L + + R L +D + L G + + ++SGG Sbjct: 92 FQTFALFPWLTVLEN-VELGL-KAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149 Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG------ILLISH 185 QR A+A + P+LL++DEP +D L+ L T + G +L+++H Sbjct: 150 LQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTH 206 Query: 186 NLHMVMASTDTVICLNN 202 N+ + D V+ ++ Sbjct: 207 NIEEAVLMCDRVLVFSS 223 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 64.7 bits (156), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 27/203 (13%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-PTIGSVKRHPQLI------- 74 + +L++++ ++K EIV L+ P+G+GKSTI I G+++ P G+V QL Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81 Query: 75 --------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119 +G+V Q+ IEN + ++ + R + +L +++ Sbjct: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR--AMDLLSYMDMSQY 139 Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179 NR D+SGGE QR + +A+ KP +++ DEP +D ++ ++ + +G Sbjct: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199 Query: 180 ILLISHNLHMVMASTDTVICLNN 202 L+ +HN H + + D I + + Sbjct: 200 ALIATHN-HDLASQMDRQITIRD 221 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 62.8 bits (151), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 32/220 (14%) Query: 11 ISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67 +S + SF K+ IL+++NFT++P E + L+G +G+GK++I LI P GSV Sbjct: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ----ILD 112 + + + +VPQ + + S+ + + P + +Q + Sbjct: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNIAIGCPHATRKEIQNAAMLAQ 404 Query: 113 RVNLIG----KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164 IG Y+ + D LS G+ QR +A+A+L+ +L+LDE +D E Sbjct: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464 Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRI 204 +++++ R+ G + SH L + D V L++++ Sbjct: 465 IWKVLREQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQV 501 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 62.8 bits (151), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 40/221 (18%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ--- 80 K+L DIN + P+ + ++GPNG+GKSTI +++ GI K G VGY+PQ Sbjct: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79 Query: 81 ----KVTIENTLP------LSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYNR----- 122 K EN + L R+ L M + +++ ++ D ++ G ++ Sbjct: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139 Query: 123 -------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 NI LSGGE +R L K LL P+LL+LDEP +D ++ + Sbjct: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWME 196 Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLN--NRICYQG 208 +R+ +G +L+++H+ + + T+ ++ ++ I YQG Sbjct: 197 KYLREYSGA-VLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 Score = 62.4 bits (150), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 21/173 (12%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 ++ +++F + P IV +IGPNG+GK+T+ +++TG P G++ + + YV Q Sbjct: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388 Query: 85 ENTLPLSLMRFMTLSMPSSRDDVLQI----------LDRVNLI-GKYNRNIKDLSGGEFQ 133 ++L + + S DD++++ N G + I LSGG+ Sbjct: 389 RDSLEAEKTVWEDI---SGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRG 445 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 R LAK L N+++LDEP +D +L L ++ GC + +ISH+ Sbjct: 446 RVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALENFAGCAV-IISHD 494 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 62.4 bits (150), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 27/218 (12%) Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---RHPQLIVGYVPQKVTIENTLPL--- 90 EI+ +IG +G+GKS + + I G+I G VK H L G Q L + Sbjct: 40 EILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKG--KQNFAFSAKLGVLFQ 97 Query: 91 --SLMRFMT----LSMPSSRD-----DVLQ--ILDRVNLIG----KYNRNIKDLSGGEFQ 133 +L MT +SMP D+++ + ++ ++G N LSGG + Sbjct: 98 HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIK 157 Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193 R LA+AL P+LL LDEP G+D +L+ +R S G + +I+H+L+ ++++ Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIST 217 Query: 194 TDTVICLNNR-ICYQGPPQTIKD-NAEYIRLFGTRATE 229 + V + + I +G I D N +IR + R T+ Sbjct: 218 CNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRFTK 255 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 59.3 bits (142), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%) Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 + L+DIN + E V + GP+GSGKST+ + I I K G ++I+ +P Sbjct: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG------EIIINGIPLND 83 Query: 83 TIENTLP-----------------LSLMRFMTL------SMP--SSRDDVLQILDRVNLI 117 I N LS++ TL MP + + + L++V + Sbjct: 84 DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143 Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 K +R+ LSGGE QRA +A++L +P +++ DEP +D + +++ + + G Sbjct: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202 Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 ++ ++H + D V+ ++ +I Q P+ +N ++ R Sbjct: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 40/198 (20%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LITG--------IIKPT 63 + L DIN I N + LIGP+G GKST + + TG I + + Sbjct: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79 Query: 64 IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQILDRVNLIG 118 + V+ + VG V Q+ N P S+ + + +++ D+ QI++ Sbjct: 80 VDVVRLRAR--VGMVFQR---PNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 Query: 119 KYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 +KD LSGG+ QR +A+AL P ++++DEP +D S+ ELI Sbjct: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 Query: 171 SVRQSTGCGILLISHNLH 188 +R+S I++++H++ Sbjct: 195 ELRESL--TIVIVTHSMQ 210 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 48/224 (21%) Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSV 67 I +N SF N + I + I+F I P++ LIG +G GKST+AKL+ + IK I ++ Sbjct: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 Query: 68 ---------KRHPQLIVGYVPQKVTIEN---------------------TLPLSLMRFMT 97 K + +G +PQ + N + ++ ++ Sbjct: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 Query: 98 LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157 + +P+ D V +G+ R +K LSGGE QR +A+A+L+ P +++ DE + Sbjct: 477 MKLPNGYDTV---------VGE--RGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201 D E + + ++ ++ L+I+H L + D +I + Sbjct: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTI-TDADNIIVFD 565 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 51.2 bits (121), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%) Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------KRH 70 N +K EI+ L+G +G+GKST+ + I G+ G V ++ Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 Query: 71 PQLIVGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124 V V Q+ T+ + L L F+ + + V + L+ VNL + I Sbjct: 109 RMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184 LSGG QR A+A +L++DEP +D + L + + ++++ I+ +S Sbjct: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 Query: 185 HNLHMVMASTDTVICLN-NRICYQGPPQTI 213 H+++ + + + RI G PQ I Sbjct: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 48.9 bits (115), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 36/211 (17%) Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPTIGSVKRHPQLIVGY---- 77 +I++ +N ++P+E+V ++GPNGSGKST++ L++G + T G + + I+ + Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76 Query: 78 -VPQKVTIENTLPLS-----LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL---- 127 + + + P+ +M+F+ +++ R + + LI + R ++ + Sbjct: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---KELLIPDFTRKVRKITAEL 133 Query: 128 ---------------SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172 SGGE + A + + L +P+L +LDE G+D + + ++ Sbjct: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193 Query: 173 RQSTGCGILLISHNLHMV-MASTDTVICLNN 202 R S L+I+H ++ DT+ L+N Sbjct: 194 R-SQDRSFLIITHYQRLLNYIKPDTIHVLHN 223 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 40.4 bits (93), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%) Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKP---NLLVLDEPLQGIDFPGELSLYELITSVRQS 175 K ++ LSGGE QR LAK L ++ L +LDEP G+ + L ++ ++ Sbjct: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897 Query: 176 TGCGILLISHNLHMVMASTDTVICL-------NNRICYQGPPQTI 213 G I++I HNL V+ + D ++ I GPP+ I Sbjct: 898 -GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940 Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 21/28 (75%) Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53 LQ+I+ + N+++ + G +GSGKS++A Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 39.7 bits (91), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 31/198 (15%) Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74 I Q+++FTI + GP+G GKS + G++ G++ + I Sbjct: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 Query: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE-- 131 +GY+ Q ++ P+S+ + L S + L I + I + +I L G Sbjct: 407 QIGYLSQHCSL---FPISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 Query: 132 -----------FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 Q+ L++ + P +L++DEPL +D + + Y L+ +++ I Sbjct: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT-I 519 Query: 181 LLISHNLHMVMASTDTVI 198 ++ISH+ ++ S ++I Sbjct: 520 VIISHDPTIISMSDFSLI 537 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98 + L+GP G GK+ +A+ + II GYV + V EN + L L++ Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV--ENII-LKLLQAADY 172 Query: 99 SMPSSRDDVLQILDRVNLIGKYNRN---IKDLSGGEFQRALL 137 ++ ++ ++ I D V+ I + + N +D+SG Q+ALL Sbjct: 173 NVERAQRGIVYI-DEVDKISRKSDNPSITRDVSGEGVQQALL 213 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 31.6 bits (70), Expect = 0.013, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 20/29 (68%) Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPT 63 P+ +V L+GP+GSGKS +A + + + T Sbjct: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST 91 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 26.2 bits (56), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 18/77 (23%) Query: 106 DVLQILDRVNLIGKYNRNI-KDLSGGEFQ-------RALLAKALLRKPNLLVLDEPLQGI 157 D L ++D +++ K R++ D F+ R K LL PN LV+DE ++G+ Sbjct: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--PNYLVIDESMEGV 59 Query: 158 DFPGELSLYELITSVRQ 174 E I VRQ Sbjct: 60 --------LEFIAHVRQ 68 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 25.4 bits (54), Expect = 0.99, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73 I LIG +G GK+TIAK + ++ P +G R P++ Sbjct: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRV 42 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 39 VTLIGPNGSGKSTIAKLITG 58 V L+GP G+GK+ +A+ + G Sbjct: 184 VLLVGPPGTGKTLLARAVAG 203 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 D+ + P I+ L+GP G GK+ I++ + + V+ +GYV + V Sbjct: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 >gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73 I LIG +G G++TIAK + ++ P +G R P++ Sbjct: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMP-VGVTTRRPRV 42 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGS 66 I+ L G G+GK+T+A+ + P I S Sbjct: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISS 31 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 39 VTLIGPNGSGKSTIAKLIT 57 V +GP G GK+T+A+++ Sbjct: 57 VLFVGPPGLGKTTLAQVVA 75 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 38 IVTLIGPNGSGKSTIA 53 IV + GP SGK+T+A Sbjct: 69 IVEIYGPESSGKTTLA 84 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 22.3 bits (46), Expect = 7.1, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 11/56 (19%) Query: 38 IVTLIGPNGSGKSTIAKLI---TG--IIKPTIGSV------KRHPQLIVGYVPQKV 82 I+ +GP G GK+++A+ I TG ++ ++G V + H + +G +P ++ Sbjct: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRI 423 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 22.3 bits (46), Expect = 8.6, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 34 KPNEIVTLIGPNGSGKSTIAKLI 56 K + + G GSGKST+ LI Sbjct: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 21.9 bits (45), Expect = 9.7, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 27 QDINFTIKPNEIVTLIG 43 Q INF +K N+I+T G Sbjct: 96 QGINFLLKKNKIITYHG 112 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 149,437 Number of Sequences: 1233 Number of extensions: 6017 Number of successful extensions: 77 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 44 length of query: 240 length of database: 328,796 effective HSP length: 71 effective length of query: 169 effective length of database: 241,253 effective search space: 40771757 effective search space used: 40771757 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)