HHsearch alignment for GI: 254780719 and conserved domain: COG0559
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].
Probab=93.06 E-value=0.5 Score=23.70 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=82.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------CHHH--HH-HHHHHHHHHHHHH
Q ss_conf 9999999999-998788999999879996435899999--9999999950--------0366--79-9999999999986
Q gi|254780719|r 8 RALFSGIGIV-LSTGPLGCFIIWQRIAYFGDTIAHSAL--LGVALSLIFQ--------LPLT--IC-IFMIATLTSLVLL 73 (260)
Q Consensus 8 ~all~~~~~~-~~~~~lG~~vv~rr~s~~~~alsH~a~--~Gial~~~l~--------~~~~--~g-a~~~~~l~al~i~ 73 (260)
T Consensus 12 nGL~~GsiyaL~AlGltlvygv~rviNf-----AHG~~~m~Gay~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~e 86 (297)
T COG0559 12 NGLSLGSIYALLALGLTLVYGVLRVINF-----AHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAITALIGLLIE 86 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999816411-----33999999999999999973233223799999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31035765045699999999999999999621----320013334433324-----422876705899998999999984
Q gi|254780719|r 74 QIQKNEALSSDAILGVITHSTISLALVILSFM----KWVNTDLTSFLFGDI-----LAVNTTDILLIWGIGFLNIMILFK 144 (260)
Q Consensus 74 ~l~~~~~~~~da~igi~~s~~~alg~llls~~----~~~~~~l~~~LfG~i-----l~v~~~dv~~~~~~~~~~~~~l~~ 144 (260)
T Consensus 87 r~v~rpl~~~~~l~~liat~--G~~l~l~~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~l~~~~~s~~~~~~l~~~ 164 (297)
T COG0559 87 RLVLRPLRGRPALALLIATL--GVSLILQGLARLIFGPRPVGLPPALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLL 164 (297)
T ss_pred HHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999973288469999999--9999999999993587666677142144210320010699999999999999999999
Q ss_pred -----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----2456654128889999808981067769999999999
Q gi|254780719|r 145 -----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 145 -----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
T Consensus 165 l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf~lg~~lA 206 (297)
T COG0559 165 LRRTRLGRALRAVAENRKMAALLGINVERVIALTFALGGALA 206 (297)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 998377188987604898998809868999999999999999