HHsearch alignment for GI: 254780719 and conserved domain: COG4120
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=93.12 E-value=0.49 Score=23.75 Aligned_cols=229 Identities=16% Similarity=0.166 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHH---HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999987--88999999879996435899999999999---995003667---99999999999986310357
Q gi|254780719|r 8 RALFSGIGIVLSTG--PLGCFIIWQRIAYFGDTIAHSALLGVALS---LIFQLPLTI---CIFMIATLTSLVLLQIQKNE 79 (260)
Q Consensus 8 ~all~~~~~~~~~~--~lG~~vv~rr~s~~~~alsH~a~~Gial~---~~l~~~~~~---ga~~~~~l~al~i~~l~~~~ 79 (260)
T Consensus 4 ~~l~~aleqgLi~~~v~LGvyisFRiLnFPDLTvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~ 83 (293)
T COG4120 4 FILIGALEQGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKF 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999989999999978613554068875315751050999999998168779999999998789899999999722
Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf 650456999999999--999999996213200----133344333244228767058999989999999842-----456
Q gi|254780719|r 80 ALSSDAILGVITHST--ISLALVILSFMKWVN----TDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKI-----WKP 148 (260)
Q Consensus 80 ~~~~da~igi~~s~~--~alg~llls~~~~~~----~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~-----~r~ 148 (260)
T Consensus 84 kI~~--LLAgIL~M~alySVNLrIMg-rpNl~ll~~~ti~~~l~~~~~~~~~~~pli~~vlvii~~~~v~~fl~t~~Gla 160 (293)
T COG4120 84 KILT--LLAGILTMIALYSVNLRIMG-RPNLPLLGEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRFLKTDLGLA 160 (293)
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 2877--99999999999988899855-89965368986335355456622577879999999999999999973453622
Q ss_pred HHHHCCCHHHHHHCCCCCCHHHHHHHHH----HHHHHHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHCCHHH
Q ss_conf 6541288899998089810677699999----999999999998---------89999--99999999999974199899
Q gi|254780719|r 149 LLATTVNYELAKAEGMQPEKIKLIFIMI----TSLMISVSIKFI---------GITLI--TSLLILPTVTARRFSTSPEN 213 (260)
Q Consensus 149 l~~~~fD~~~A~~~Gi~v~~~~~l~~~l----~al~v~~~v~~v---------G~llv--~allv~Paa~A~~l~~~~~~ 213 (260)
T Consensus 161 lrAtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGiG~iVvGLAavIIG----e~i~~~r~~~ 236 (293)
T COG4120 161 LRATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSMGIGTIVVGLAAVIIG----ETIFGSRRLL 236 (293)
T ss_pred EECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf 101279877999839872568999899988899985668887436530025744245456799977----9887455899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999999999999999955880899
Q gi|254780719|r 214 MAILATIIGILGIIIGLYGSLIFDTPSGPS 243 (260)
Q Consensus 214 ~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~ 243 (260)
T Consensus 237 ~~lla~viGsI~Yr~~i~~~L~~Gl~~sdL 266 (293)
T COG4120 237 LALLAVVIGSILYRFAIALALSSGLDASDL 266 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 999999999999999999999859986777