HHsearch alignment for GI: 254780719 and conserved domain: PRK03784
>PRK03784 vtamin B12-transporter permease; Provisional.
Probab=99.93 E-value=3.1e-22 Score=139.60 Aligned_cols=249 Identities=15% Similarity=0.169 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999999999998788999999879996435899999999999995003------66799999999999986310357650
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLP------LTICIFMIATLTSLVLLQIQKNEALS 82 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~------~~~ga~~~~~l~al~i~~l~~~~~~~ 82 (260)
T Consensus 64 a~l~Ga~LavsG~llQ~l~rNpLA~P~iLGissGA~l~~~~~~~~~~~~~~~~~~~~~a~~gal~~~~l~~~~~~~~~~~ 143 (330)
T PRK03784 64 VLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPGWALSLCAIAGALIITLILLRFARRHRLS 143 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999947988898503588999999999999987677799999999999999999999999547988
Q ss_pred HH--HHHHHHHHHHHHHHH-HHHHHCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 45--699999999999999-999621320-01333443332442287670589999899999998424566541288899
Q gi|254780719|r 83 SD--AILGVITHSTISLAL-VILSFMKWV-NTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYEL 158 (260)
Q Consensus 83 ~d--a~igi~~s~~~alg~-llls~~~~~-~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~ 158 (260)
T Consensus 144 ~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~-~~~~~~~~r~L~~L~LGd~~ 222 (330)
T PRK03784 144 TARLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQGRPLNMLALGETS 222 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCHHHHCCHHH
T ss_conf 15899999999999999999999958999999999997265457988899999999999-99999998656042179488
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9980898106776999999999999999988999999999999999974199899999999999999999999999----
Q gi|254780719|r 159 AKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL---- 234 (260)
Q Consensus 159 A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~---- 234 (260)
T Consensus 223 A~~LGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVG-Li~PhiaR~l~g~~~~~llp~sal~Ga~lll~aD~~~R~l~~ 301 (330)
T PRK03784 223 ARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIG-LVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALA 301 (330)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9878998999999999999999999999311587399-629999999807775059999999999999999999856256
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95588089999999999999987239
Q gi|254780719|r 235 IFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 235 ~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
T Consensus 302 p~elPvGivtaliG~P~fi-~Ll~r~ 326 (330)
T PRK03784 302 SAELPIGVVTATLGAPVFI-WLLLRS 326 (330)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf 6652099999999899999-989844