HHsearch alignment for GI: 254780719 and conserved domain: PRK09512
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed.
Probab=96.02 E-value=0.083 Score=27.98 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCH-HHHHHHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCH----H--H
Q ss_conf 9999999995003-6679999999999998----6310357650456999999999999999996-213200----1--3
Q gi|254780719|r 44 LLGVALSLIFQLP-LTICIFMIATLTSLVL----LQIQKNEALSSDAILGVITHSTISLALVILS-FMKWVN----T--D 111 (260)
Q Consensus 44 ~~Gial~~~l~~~-~~~ga~~~~~l~al~i----~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~~~----~--~ 111 (260)
T Consensus 82 l~~~~~~~l~~~~~~~~lai~~~l~~G~~~G~iNG~lV~~~~ip~--~I~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~ 159 (321)
T PRK09512 82 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQA--FIATLVMMLLLRGVTMVYTDGSPINTGFTDNAD 159 (321)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 999999998436897899999999999999999858776336777--999999999999999998299212467764358
Q ss_pred -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -3344333244228767058999989999999--8424566541288899998089810677699999999999
Q gi|254780719|r 112 -LTSFLFGDILAVNTTDILLIWGIGFLNIMIL--FKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 112 -l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l--~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
T Consensus 160 ~~~~~~~g~~~gip~~-~~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~lag 232 (321)
T PRK09512 160 LFGWFGIGRPLGVPTP-VWIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAA 232 (321)
T ss_pred HHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHH
T ss_conf 9999743651565699-999999999999999866887488797798999998098851488747999999999