HHsearch alignment for GI: 254780719 and conserved domain: cd06580
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=95.71 E-value=0.11 Score=27.23 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-CCH
Q ss_conf 42456654128889999808981067769999999999999999889999999-----------999999999741-998
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSL-----------LILPTVTARRFS-TSP 211 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~al-----------lv~Paa~A~~l~-~~~ 211 (260)
T Consensus 116 ~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGl----aG~~~~~~~~~~~~~~~~~g~g~~aia~~ilg~~~p 191 (234)
T cd06580 116 RFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGL----AGAYLVLGVQGRFTEGMSAGYGFIAIAVALLGRWNP 191 (234)
T ss_pred HHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 7874500331889999887988889999999999999999----999999865025776776661499999999979988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999999999999999995588089999999
Q gi|254780719|r 212 ENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITS 248 (260)
Q Consensus 212 ~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~ 248 (260)
T Consensus 192 ~g~~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~ 227 (234)
T cd06580 192 LGILLAALLFGALEA-GGIALQRSGGVPSELVQVLPG 227 (234)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999999-999997617999999999999