HHsearch alignment for GI: 254780719 and conserved domain: cd06580

>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=95.71  E-value=0.11  Score=27.23  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-CCH
Q ss_conf             42456654128889999808981067769999999999999999889999999-----------999999999741-998
Q gi|254780719|r  144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSL-----------LILPTVTARRFS-TSP  211 (260)
Q Consensus       144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~al-----------lv~Paa~A~~l~-~~~  211 (260)
T Consensus       116 ~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGl----aG~~~~~~~~~~~~~~~~~g~g~~aia~~ilg~~~p  191 (234)
T cd06580         116 RFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGL----AGAYLVLGVQGRFTEGMSAGYGFIAIAVALLGRWNP  191 (234)
T ss_pred             HHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf             7874500331889999887988889999999999999999----999999865025776776661499999999979988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999999999999999999995588089999999
Q gi|254780719|r  212 ENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITS  248 (260)
Q Consensus       212 ~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~  248 (260)
T Consensus       192 ~g~~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~  227 (234)
T cd06580         192 LGILLAALLFGALEA-GGIALQRSGGVPSELVQVLPG  227 (234)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf             999999999999999-999997617999999999999