Query gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 260
No_of_seqs 123 out of 2499
Neff 7.3
Searched_HMMs 39220
Date Sun May 29 20:57:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780719.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09543 znuB high-affinity zi 100.0 0 0 429.0 32.5 259 2-260 1-259 (261)
2 COG1108 ZnuB ABC-type Mn2+/Zn2 100.0 0 0 424.0 32.8 260 1-260 9-268 (274)
3 pfam00950 ABC-3 ABC 3 transpor 100.0 0 0 420.3 33.6 258 2-259 1-258 (258)
4 cd06550 TM_ABC_iron-siderophor 100.0 6.8E-36 1.7E-40 214.2 27.4 248 6-254 1-259 (261)
5 PRK10577 iron-hydroxamate tran 99.9 6.8E-25 1.7E-29 154.1 24.7 249 10-260 400-664 (666)
6 PRK09535 btuC corrinoid ABC tr 99.9 7.4E-24 1.9E-28 148.4 25.0 250 9-260 102-361 (366)
7 PRK09777 fecD iron-dicitrate t 99.9 1.2E-23 3.2E-28 147.2 25.9 250 10-260 55-318 (318)
8 PRK10577 iron-hydroxamate tran 99.9 1.8E-23 4.7E-28 146.3 25.9 249 9-259 69-330 (666)
9 PRK10440 iron-enterobactin tra 99.9 5.3E-23 1.4E-27 143.8 26.8 250 8-260 65-326 (330)
10 PRK11228 fecC iron-dicitrate t 99.9 1.5E-23 3.8E-28 146.8 23.8 250 9-260 58-322 (323)
11 pfam01032 FecCD FecCD transpor 99.9 9.8E-23 2.5E-27 142.3 26.0 249 9-259 49-312 (312)
12 PRK10441 iron-enterobactin tra 99.9 8.9E-23 2.3E-27 142.5 25.7 250 9-260 67-329 (335)
13 PRK03784 vtamin B12-transporte 99.9 3.1E-22 7.8E-27 139.6 26.1 249 9-260 64-326 (330)
14 COG0609 FepD ABC-type Fe3+-sid 99.9 1.4E-20 3.6E-25 130.5 26.0 247 11-259 59-328 (334)
15 COG4606 CeuB ABC-type enteroch 99.5 3.1E-14 7.8E-19 95.9 9.2 248 11-260 54-317 (321)
16 COG4779 FepG ABC-type enteroba 99.4 3.9E-13 9.9E-18 89.9 7.7 200 58-260 134-342 (346)
17 COG4605 CeuC ABC-type enteroch 99.1 8.2E-09 2.1E-13 66.2 15.1 190 68-260 115-313 (316)
18 COG4139 BtuC ABC-type cobalami 99.0 3.9E-08 1E-12 62.5 14.8 224 10-244 60-309 (326)
19 PRK09699 D-allose transporter 97.2 0.013 3.3E-07 32.4 11.8 155 57-222 103-267 (325)
20 cd06581 TM_PBP1_LivM_like Tran 97.0 0.017 4.3E-07 31.7 19.9 107 145-259 147-262 (268)
21 pfam02653 BPD_transp_2 Branche 96.9 0.021 5.2E-07 31.3 18.3 144 38-183 29-191 (267)
22 TIGR03408 urea_trans_UrtC urea 96.8 0.026 6.7E-07 30.7 14.5 37 145-181 191-227 (313)
23 cd06574 TM_PBP1_branched-chain 96.8 0.028 7E-07 30.6 16.4 39 144-182 144-182 (266)
24 PRK11285 araH L-arabinose tran 96.7 0.033 8.3E-07 30.2 12.6 110 70-182 123-238 (327)
25 cd06579 TM_PBP1_transp_AraH_li 96.5 0.046 1.2E-06 29.4 14.7 37 145-181 141-177 (263)
26 cd06582 TM_PBP1_LivH_like Tran 96.4 0.055 1.4E-06 28.9 14.2 39 145-183 153-191 (272)
27 COG1172 AraH Ribose/xylose/ara 96.3 0.057 1.5E-06 28.9 12.2 112 69-182 106-221 (316)
28 PRK09512 rbsC ribose ABC trans 96.0 0.083 2.1E-06 28.0 12.0 136 44-182 82-232 (321)
29 PRK11618 inner membrane ABC tr 95.8 0.11 2.7E-06 27.4 13.2 39 144-182 184-222 (317)
30 cd06580 TM_PBP1_transp_TpRbsC_ 95.7 0.11 2.9E-06 27.2 22.0 100 144-248 116-227 (234)
31 PRK09478 mglC beta-methylgalac 95.5 0.13 3.4E-06 26.9 13.9 71 144-222 205-275 (336)
32 PRK11301 livM leucine/isoleuci 95.0 0.2 5E-06 25.9 14.9 80 145-232 286-366 (416)
33 TIGR03622 urea_t_UrtB_arc urea 95.0 0.2 5E-06 25.9 26.0 60 122-181 129-193 (283)
34 PRK10740 branched-chain amino 94.8 0.23 5.8E-06 25.6 27.8 174 1-181 1-216 (308)
35 TIGR03409 urea_trans_UrtB urea 93.2 0.48 1.2E-05 23.8 25.9 62 121-182 138-204 (291)
36 COG4120 ABC-type uncharacteriz 93.1 0.49 1.3E-05 23.8 21.3 229 8-243 4-266 (293)
37 COG0559 LivH Branched-chain am 93.1 0.5 1.3E-05 23.7 27.5 167 8-181 12-206 (297)
38 COG4177 LivM ABC-type branched 92.7 0.56 1.4E-05 23.5 18.6 209 38-259 56-300 (314)
39 COG4214 XylH ABC-type xylose t 91.4 0.82 2.1E-05 22.5 10.6 39 144-182 264-302 (394)
40 COG1079 Uncharacterized ABC-ty 90.8 0.95 2.4E-05 22.2 12.2 170 16-195 19-211 (304)
41 COG4603 ABC-type uncharacteriz 74.7 5.2 0.00013 18.2 19.1 195 60-256 121-338 (356)
42 TIGR00907 2A0304 amino acid pe 59.8 11 0.00027 16.4 5.3 98 145-242 336-462 (494)
43 pfam01790 LGT Prolipoprotein d 52.9 14 0.00036 15.8 12.7 38 7-44 14-51 (257)
44 pfam01566 Nramp Natural resist 38.9 24 0.00061 14.5 15.0 41 46-87 80-120 (365)
45 TIGR00822 EII-Sor PTS system, 38.0 20 0.00052 14.9 1.8 183 3-225 26-221 (271)
46 PRK00701 manganese transport p 37.8 25 0.00064 14.4 18.5 53 44-97 128-183 (438)
47 PRK00191 tatA twin arginine tr 31.2 32 0.00082 13.8 2.1 27 138-170 13-39 (107)
48 TIGR02872 spore_ytvI sporulati 22.5 47 0.0012 12.9 7.1 56 48-103 13-71 (350)
49 pfam05805 L6_membrane L6 membr 21.9 49 0.0012 12.8 4.3 19 35-53 10-28 (195)
50 TIGR01937 nqrB NADH:ubiquinone 21.8 49 0.0012 12.8 6.7 89 36-124 365-467 (508)
No 1
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=100.00 E-value=0 Score=428.99 Aligned_cols=259 Identities=39% Similarity=0.735 Sum_probs=256.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00698999999999999987889999998799964358999999999999950036679999999999998631035765
Q gi|254780719|r 2 YNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEAL 81 (260)
Q Consensus 2 ~~~f~~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~~~~ga~~~~~l~al~i~~l~~~~~~ 81 (260)
+.|||+||++++++++..||++|+|+++||++|++|+++|+++||+++|++++.++.+++..++++.+..+.++++|++.
T Consensus 1 ~~ef~~~a~la~~l~~~~~g~lG~f~vlrr~s~~gdalsH~~l~Gial~~l~~~~~~~~~~~~~ll~a~~i~~l~~~~~~ 80 (261)
T PRK09543 1 MIELLLPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQL 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 97789999999999999999887999996299998899999999999999997056799999999999999998713665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 04569999999999999999962132001333443332442287670589999899999998424566541288899998
Q gi|254780719|r 82 SSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKA 161 (260)
Q Consensus 82 ~~da~igi~~s~~~alg~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~~ 161 (260)
++|+.+|++++.++|+|++++++.++.+.|++++||||+++++++|+|.......+...++..+|||+...+||||+|++
T Consensus 81 ~~Da~igiv~s~~~algvilis~~~~~~~~l~~~LfG~il~v~~~dl~~~~~~~~~~~~~~~~~~r~l~~~~fD~~~A~~ 160 (261)
T PRK09543 81 AIDTLLGIMAHSALSLGLVVVSLMSNVRVDLMAYLFGDLLAVTPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFV 160 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 23489999999999999989531578877732102303860899899999999999999999999999998289999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 08981067769999999999999999889999999999999999741998999999999999999999999999558808
Q gi|254780719|r 162 EGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSG 241 (260)
Q Consensus 162 ~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g 241 (260)
.|+|++++|++++.+++++++.++|++|++++.+++++|+++||+++||+|+++.+|.++|..+++.|+++||++|+|+|
T Consensus 161 ~Gi~v~~~~~~~~~lial~vv~~ik~VG~lLv~alLiiPaa~A~~~s~~~~~~~~~s~l~~~~~~~~Gl~~S~~~d~p~G 240 (261)
T PRK09543 161 DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAFYDTPAG 240 (261)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 29988999999999999999999999999999999998999999997689999999999999999999999997299904
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999987239
Q gi|254780719|r 242 PSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 242 ~~Iv~~~~~~f~~~~~~~k 260 (260)
|+|+++.+.+|+++++.||
T Consensus 241 ~~Ivl~~~~~f~lsli~k~ 259 (261)
T PRK09543 241 PSVVLCAALLFILSMMKKQ 259 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999871
No 2
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=424.01 Aligned_cols=260 Identities=34% Similarity=0.636 Sum_probs=255.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 90069899999999999998788999999879996435899999999999995003667999999999999863103576
Q gi|254780719|r 1 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEA 80 (260)
Q Consensus 1 m~~~f~~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~~~~ga~~~~~l~al~i~~l~~~~~ 80 (260)
+++||||||++++.++++.||++|+|+++|||++++|++||+++||+++|++++.|+.++++.++++.+..+.++++|++
T Consensus 9 ~~~~f~~~alla~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~Gval~~ll~~~~~~~a~~~~l~~a~~i~~l~~~~~ 88 (274)
T COG1108 9 FQYDFMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFLLGINPLLGAFIFGLLAALLIGYLRRRSK 88 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999999999877599999889998549999999999999998126899999999999999999986124
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 50456999999999999999996213200133344333244228767058999989999999842456654128889999
Q gi|254780719|r 81 LSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAK 160 (260)
Q Consensus 81 ~~~da~igi~~s~~~alg~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~ 160 (260)
.++|+++|++++.++++|++++++.++.+.|+++|||||+++++++|++...+...+++.++.++|||++..+||||+||
T Consensus 89 ~~~D~aigiv~s~~~alGlvl~s~~~~~~~~l~~~LfG~il~V~~~dl~~~~ii~~i~l~~l~~f~r~ll~~~fD~~~A~ 168 (274)
T COG1108 89 LKEDTAIGIVFSSGLALGLVLLSLVPSSRVDLMHYLFGDILAVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEFAR 168 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 22789999999999999999875246765449999954256078989999999999999999999999999626899998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 80898106776999999999999999988999999999999999974199899999999999999999999999955880
Q gi|254780719|r 161 AEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS 240 (260)
Q Consensus 161 ~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~ 240 (260)
+.|+|+|++|++++.+++++++.++|+||++++.+++++|+++||+++||+++++.+|..+|..++..|.++||++|.|+
T Consensus 169 ~~Gl~v~~~~~l~~~lisl~iv~~~k~VG~iLv~alLi~Paa~A~~lt~~~~~~~~ia~~~g~~s~~~Gl~lSy~~~~p~ 248 (274)
T COG1108 169 VLGLNVRLLHYLLLVLLALTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYLSYYLDLPS 248 (274)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 74985889999999999999999999999999999998699999999728999999999999999999999999707894
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999999987239
Q gi|254780719|r 241 GPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 241 g~~Iv~~~~~~f~~~~~~~k 260 (260)
||+|+++....|++++++||
T Consensus 249 g~~Ivl~~~~~fl~~~l~~~ 268 (274)
T COG1108 249 GPAIVLIAALLFLLSFLFGP 268 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999874
No 3
>pfam00950 ABC-3 ABC 3 transport family.
Probab=100.00 E-value=0 Score=420.31 Aligned_cols=258 Identities=32% Similarity=0.603 Sum_probs=254.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00698999999999999987889999998799964358999999999999950036679999999999998631035765
Q gi|254780719|r 2 YNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEAL 81 (260)
Q Consensus 2 ~~~f~~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~~~~ga~~~~~l~al~i~~l~~~~~~ 81 (260)
++||||||++++++++..||++|+++++||++|++|+++|+++||+++|++++.++.+++..++++.++.+.++++|++.
T Consensus 1 ~y~F~~~All~~ll~~~~~~~lG~~vv~rr~s~~~~alsH~al~Giala~~l~~~~~l~a~~~~~l~a~~i~~l~~~~~~ 80 (258)
T pfam00950 1 QYEFMQRALLASILVSLACGILGSFLVLRRQSLMGDALSHAVLPGVALAFFLGINPLIGAFLFGLIAAVAIGYLRRNSRL 80 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96579999999999999999998999995099998899999999999999992319999999999999999999851676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 04569999999999999999962132001333443332442287670589999899999998424566541288899998
Q gi|254780719|r 82 SSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKA 161 (260)
Q Consensus 82 ~~da~igi~~s~~~alg~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~~ 161 (260)
++|+.+|++++.++++|++++++.++.+.|++++||||+++++++|++...+...+.+.++..+|||+...+||||+||+
T Consensus 81 ~~da~igi~~s~~~algvll~s~~~~~~~~~~~~LfG~il~v~~~dl~~~~~~~~~~l~~~~~~~r~l~~~~fD~~~A~~ 160 (258)
T pfam00950 81 KEDTAIGIVFSSFLALGLLLISLIKGSAVDLDHYLFGNILGISQEDLIQIAIITAIILLLLLLFWKELLLITFDPDHAKV 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 04799999999999999999975678765523787336976787789999999999999999999999999608999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 08981067769999999999999999889999999999999999741998999999999999999999999999558808
Q gi|254780719|r 162 EGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSG 241 (260)
Q Consensus 162 ~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g 241 (260)
+|+|+|.+|+.++.+++++++.++|++|++++.+++++|+++||+++||+|+++++|..+|..+++.|+++||++|+|||
T Consensus 161 ~Gi~~~~~~~~~~~lial~vv~~~~~vG~lLv~allv~Paa~A~~~s~s~~~~~~~s~~~~~~~~~~Gl~lS~~~~lp~g 240 (258)
T pfam00950 161 IGLPVQFLYLLLLILLALTIVVAMQAVGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYFDTPTG 240 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 28861378999999999999999999999999999997999999997799999999999999999999999998299904
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998723
Q gi|254780719|r 242 PSIIITSLFLFILSFFYK 259 (260)
Q Consensus 242 ~~Iv~~~~~~f~~~~~~~ 259 (260)
|+|+++.+.+|+++++++
T Consensus 241 ~~Iv~~~~~~f~~~~~fs 258 (258)
T pfam00950 241 PVIVLIATLLFLISFAFA 258 (258)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999979
No 4
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=100.00 E-value=6.8e-36 Score=214.18 Aligned_cols=248 Identities=24% Similarity=0.401 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 899999999999998788999999879996435899999999999995003-----66799999999999986310--35
Q gi|254780719|r 6 FIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLP-----LTICIFMIATLTSLVLLQIQ--KN 78 (260)
Q Consensus 6 ~~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~-----~~~ga~~~~~l~al~i~~l~--~~ 78 (260)
++.|++++..+++.+...+.....|..+....+++|++.+|++++++++.+ ....++..+........... ++
T Consensus 1 il~a~l~G~~L~~aG~~~Q~~~rN~la~p~~lGis~gA~lg~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (261)
T cd06550 1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999808988796085899999999999999987777899999999999999999999997379
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 76504569999999999999999962-13200133344333244228767058999989999999842456654128889
Q gi|254780719|r 79 EALSSDAILGVITHSTISLALVILSF-MKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157 (260)
Q Consensus 79 ~~~~~da~igi~~s~~~alg~llls~-~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~ 157 (260)
.+.++|..+|+..+.+++.+..++++ .++...++..|++||+..++|+|++.......+........+|+++..++|||
T Consensus 81 ~~~~~liL~Gi~is~~~~a~~~~l~~~~~~~~~~~~~wl~Gs~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~ 160 (261)
T cd06550 81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 87399999999999999999999987476768999999835645787999999999999999999999999999978989
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9998089810677699999999999999998899999999999999997419989999999999999999999999995-
Q gi|254780719|r 158 LAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIF- 236 (260)
Q Consensus 158 ~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~~- 236 (260)
.||+.|+|++++|+.++.+.++.++.+++.+|.+.+.+ ++.|+.+++++++++|+.++.|.++|......+..+++.+
T Consensus 161 ~A~~lGi~v~~~~~~~l~l~~~~~~~~v~~vG~i~fvG-Li~P~iar~l~~~~~~~~l~~s~l~G~~l~~~~d~i~r~~~ 239 (261)
T cd06550 161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVG-LIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239 (261)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98876996999999999999999999999847999999-99999999984888443999999999999999999998836
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q ss_conf --588089999999999999
Q gi|254780719|r 237 --DTPSGPSIIITSLFLFIL 254 (260)
Q Consensus 237 --~lp~g~~Iv~~~~~~f~~ 254 (260)
++|+|+.+.++.+..|+.
T Consensus 240 ~~~~p~g~v~~liG~p~fl~ 259 (261)
T cd06550 240 PSELPVGPVTALLGAPYFLY 259 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 65640999999999999998
No 5
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=99.95 E-value=6.8e-25 Score=154.09 Aligned_cols=249 Identities=15% Similarity=0.224 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999987889999----99879996435899999999999995003-----667999999999999863103576
Q gi|254780719|r 10 LFSGIGIVLSTGPLGCFI----IWQRIAYFGDTIAHSALLGVALSLIFQLP-----LTICIFMIATLTSLVLLQIQKNEA 80 (260)
Q Consensus 10 ll~~~~~~~~~~~lG~~v----v~rr~s~~~~alsH~a~~Gial~~~l~~~-----~~~ga~~~~~l~al~i~~l~~~~~ 80 (260)
.+++++.+...+.-|... ...=-+----++++.+-.|+++++++... ....++..++++..++..+++|++
T Consensus 400 ~l~A~l~Ga~La~aG~llQ~l~rNPLAsP~iLGissGA~lg~v~~~~~~~~~~~~~~~~~a~~Gal~~~~lv~~l~~~~~ 479 (666)
T PRK10577 400 LLAALLAGALLAVAGVLLQRLTRNPLASPEVLGVSSGAALGVVLALFLVPGAGFGWLLAAALLGAAAALLLILLLARRHG 479 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999847988897354148649999999999988887899999999999999999999982579
Q ss_pred CHHHHHH--HHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 5045699--999999999999-9996213200133344333244228767058999989999999842456654128889
Q gi|254780719|r 81 LSSDAIL--GVITHSTISLAL-VILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157 (260)
Q Consensus 81 ~~~da~i--gi~~s~~~alg~-llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~ 157 (260)
.+.+..+ |+..+..++.-. +++...++...++..|+.||....+|+|++.......+.....+.+.|++...+.|||
T Consensus 480 ~~~~~liL~Giaisa~~~Al~~~l~~~~~~~~~~~~~Wl~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~r~L~lL~LGd~ 559 (666)
T PRK10577 480 FAPERLLLTGIALSALFTALLQILLASGDPRAAQLLTWLSGSTYGVTWAQALLLLIVAVILLAVALLLRRWLDLLPLGDD 559 (666)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHH
T ss_conf 98189999999999999999999998088879999999967624688889999999999999999999875723526989
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9998089810677699999999999999998899999999999999997419989999999999999999999999----
Q gi|254780719|r 158 LAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGS---- 233 (260)
Q Consensus 158 ~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS---- 233 (260)
.|++.|+|+++.+...+.+.++.++.++..+|.+-+++ ++.|+.+.+...++.|+.++.|.++|..-.....+++
T Consensus 560 ~A~sLGv~v~~~r~~~l~~a~llta~ava~~G~I~FVG-LiaPHiaR~l~g~~~~~~l~~sal~Ga~lll~aD~l~R~~~ 638 (666)
T PRK10577 560 TARALGLPLTRARLALLLLAALLTAAATATVGPLSFVG-LMAPHLARMLGFRRARPQLLIAALLGALLMVLADWLGRTLL 638 (666)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99878997899999999999999999999705999999-97999999982888633899999999999999999884338
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 995588089999999999999987239
Q gi|254780719|r 234 LIFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 234 ~~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
+.+++|.|-...++ +..|++.+++||
T Consensus 639 ~P~eiPvGivtali-G~P~fl~Ll~r~ 664 (666)
T PRK10577 639 FPYQIPAGLLAALI-GAPYFLWLLRKQ 664 (666)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHHCC
T ss_conf 86560299999999-999999986205
No 6
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=99.94 E-value=7.4e-24 Score=148.43 Aligned_cols=250 Identities=14% Similarity=0.163 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHCCCCC-CHH
Q ss_conf 999999999998788999999879996435899999999999995003----667999999999999863103576-504
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLP----LTICIFMIATLTSLVLLQIQKNEA-LSS 83 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~----~~~ga~~~~~l~al~i~~l~~~~~-~~~ 83 (260)
|.++|..+++...........+=-+-.--+++..+-.|++..+.++.. ....++.++.+++..+..+.++++ .+.
T Consensus 102 A~lvGaaLavaG~lmQ~l~RNPLAdP~iLGVssGA~lga~~~i~l~~~~~~~~~~~af~gal~~~~~v~~l~~~~g~~~~ 181 (366)
T PRK09535 102 GATVGFSLAIAGAVMQGFFRNPMADPSIIGVSSGAAVGAVAFIVLPLVVPFGLQAAAFAGALIAAFTVYLIATRNGRTPT 181 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999999728888697287999999999999999988888999999999999999999999980688875
Q ss_pred H--HHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 5--699999999999999-9996213200133344333244228767058999989999999842456654128889999
Q gi|254780719|r 84 D--AILGVITHSTISLAL-VILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAK 160 (260)
Q Consensus 84 d--a~igi~~s~~~alg~-llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~ 160 (260)
+ ...|+..+.+++... +++...++...+...|+.||+...+|+|++.......+.....+...|+++...++||.|+
T Consensus 182 ~~LiL~Giavs~~~~Al~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~v~~~~~~~~i~~~~~~~~~r~L~~L~lGde~A~ 261 (366)
T PRK09535 182 ATLLLAGVAVQTFLGAVISFLLLHSGESIRRAVYWLMGHLHGSTWGDVRAALPVVVVGFVVLLAYARDLNVLLLGEEDAH 261 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHH
T ss_conf 99999999999999999999997481768999999977157898889999999999999999999996420213959998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCC
Q ss_conf 80898106776999999999999999988999999999999999974199899999999999999999999999--9558
Q gi|254780719|r 161 AEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL--IFDT 238 (260)
Q Consensus 161 ~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~--~~~l 238 (260)
+.|+|+++.+..++.+.++.++.++..+|.+.+++ ++.|+.+.+...++.|..++.|.+.|.........++- ..++
T Consensus 262 sLGvnv~~~r~~~l~la~llta~~Va~~G~IgFVG-Li~PHiaR~l~g~~~r~llp~saL~Ga~lll~aD~laR~~p~El 340 (366)
T PRK09535 262 TLGIEVERTKRILLAAASVVTAAAVAVAGVIGFVG-LIVPHAMRLLVGPDHRILLPTSALAGASFLVATDTVARSGATEP 340 (366)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78998899999999999999999999334164698-60899999992888434999999999999999999756486445
Q ss_pred CCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8089999999999999987239
Q gi|254780719|r 239 PSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 239 p~g~~Iv~~~~~~f~~~~~~~k 260 (260)
|.|-...++.+.+| +.++.||
T Consensus 341 PvGivtalIG~P~f-l~LL~rr 361 (366)
T PRK09535 341 PVGIITAALGAPFF-LYLLRKR 361 (366)
T ss_pred CHHHHHHHHHHHHH-HHHHHHH
T ss_conf 49999999989999-9999840
No 7
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=99.94 E-value=1.2e-23 Score=147.18 Aligned_cols=250 Identities=11% Similarity=0.094 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999878899----9999879996435899999999999995003-----667999999999999863103576
Q gi|254780719|r 10 LFSGIGIVLSTGPLGC----FIIWQRIAYFGDTIAHSALLGVALSLIFQLP-----LTICIFMIATLTSLVLLQIQKNEA 80 (260)
Q Consensus 10 ll~~~~~~~~~~~lG~----~vv~rr~s~~~~alsH~a~~Gial~~~l~~~-----~~~ga~~~~~l~al~i~~l~~~~~ 80 (260)
.+.+++.+...+.-|. ....+=.+----++++.+-.|++.++.+..+ ....++..++++......+++|++
T Consensus 55 ~l~ail~G~~LalaG~llQ~l~rNpLA~P~iLGvssGA~l~~v~~~~~~~~~~~~~~~~~a~~gal~~~~~~~~l~~~~~ 134 (318)
T PRK09777 55 LLLALFVGAALAVAGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQ 134 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999937988894275689889999999999987678999999999999999999999966787
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 504569999999999999999962-1320013334433324422876705899998999999984245665412888999
Q gi|254780719|r 81 LSSDAILGVITHSTISLALVILSF-MKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELA 159 (260)
Q Consensus 81 ~~~da~igi~~s~~~alg~llls~-~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A 159 (260)
..+=...|+..+.+++.-.-++.. .++...+...|++||....+|+|++.......+.....+...|++...+.+||.|
T Consensus 135 ~~~liL~Gi~is~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~ii~~~~~~~~~~~l~~l~lGe~~A 214 (318)
T PRK09777 135 PMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIALPLLILLLPLSLSFCRDLDLLALGDARA 214 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 07999999999999999999999679899999999994054347889999999999999999999999714363693999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf 980898106776999999999999999988999999999999999974199899999999999999999999999----9
Q gi|254780719|r 160 KAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL----I 235 (260)
Q Consensus 160 ~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~----~ 235 (260)
++.|+|+++.+...+.+.++.++.++..+|.+.+++ ++.|+.+.+...++.|+.++.|.+.|..-......++. .
T Consensus 215 ~sLGvnv~~~r~~~l~~~~~l~a~~va~vG~I~FVG-Li~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~R~l~~p 293 (318)
T PRK09777 215 TTLGVSVPHTRFWALLLAVALTATGVAACGPISFIG-LVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPP 293 (318)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 977997999999999999999999998025052498-6199999998088854189999999999999999999660666
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5588089999999999999987239
Q gi|254780719|r 236 FDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 236 ~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
+++|.|-.+.++.+..|+....++|
T Consensus 294 ~elPvGivtaliG~P~fi~ll~R~r 318 (318)
T PRK09777 294 LELPAGVLTAIIGAPWFVWLLVRMR 318 (318)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5211999999998999999740379
No 8
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=99.94 E-value=1.8e-23 Score=146.25 Aligned_cols=249 Identities=15% Similarity=0.197 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99999999999878899999987999643589999999999999500-----3667999999999999863103576504
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQL-----PLTICIFMIATLTSLVLLQIQKNEALSS 83 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~-----~~~~ga~~~~~l~al~i~~l~~~~~~~~ 83 (260)
|+++|..+++............=-+-..-+++..+-.|++++..+.. .....++..+.++..++..++++++.+.
T Consensus 69 AllvGa~LalaG~l~Q~v~rNPLAsP~~LGvssGA~lg~v~~~~~~~~~~~~~~~~~A~~Ga~~a~~lv~~la~~~~~s~ 148 (666)
T PRK10577 69 ALLAGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLGLVAATLFAPALLALASQLAAFAGALLAAALVFALAGGKRLSP 148 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999999738878797386899999999999999998788899999999999999999999980579982
Q ss_pred HHHH--HHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 5699--999999999999-9996213200133344333244228767058999989999999842456654128889999
Q gi|254780719|r 84 DAIL--GVITHSTISLAL-VILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAK 160 (260)
Q Consensus 84 da~i--gi~~s~~~alg~-llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~ 160 (260)
...+ |+..+..++... .++...++...++..|+.||....+|+|+........+.....+...|++...+.|||.|+
T Consensus 149 ~~liL~Giavs~~~~a~~~~l~~~~~~~~~~~~~W~~Gsl~~~~w~~v~~l~~~~~~~~~~~~~~~r~L~~L~LGd~~A~ 228 (666)
T PRK10577 149 LRLVLAGMVVSLYLGAITTLLVLFNEQQLQGLFLWGAGSLAQNGWSGVQRLLPQLLVGLLLLLLLIRPLTLLGLGDDVAR 228 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHH
T ss_conf 99999999999999999999999399999998998825387998778999999999999999999875782303999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 808981067769999999999999999889999999999999999741998999999999999999999999999-----
Q gi|254780719|r 161 AEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLI----- 235 (260)
Q Consensus 161 ~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~----- 235 (260)
+.|+|+++.+...+.+.++.++.++..+|.+.+++ ++.|+.+.+...+++|+.++.|.+.|..-.+....++-.
T Consensus 229 sLGv~v~~~r~~~l~~a~llta~aVa~~G~IgFVG-LiaPhiaR~l~~~~~~~~lp~s~l~Ga~lll~aD~~~r~l~~~~ 307 (666)
T PRK10577 229 SLGLAVSLARLAALALAIFLSAVVVSAVGPIGFIG-LAAPNLARLLGARRLRARLLLSPLIGALLLLLTDQLVLLLARVG 307 (666)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77997899999999999999999999413276888-60999999983778540799999999999999999998603575
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 558808999999999999998723
Q gi|254780719|r 236 FDTPSGPSIIITSLFLFILSFFYK 259 (260)
Q Consensus 236 ~~lp~g~~Iv~~~~~~f~~~~~~~ 259 (260)
.++|+|....++ +..|++.+..|
T Consensus 308 ~elP~G~vTali-GaP~ll~Ll~R 330 (666)
T PRK10577 308 AELPTGAVTALI-GAPLLLWLLPR 330 (666)
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHH
T ss_conf 304079999998-78999999997
No 9
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=99.94 E-value=5.3e-23 Score=143.75 Aligned_cols=250 Identities=12% Similarity=0.131 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999999999999878899999987999643589999999999999500----3667999999999999863103576504
Q gi|254780719|r 8 RALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQL----PLTICIFMIATLTSLVLLQIQKNEALSS 83 (260)
Q Consensus 8 ~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~----~~~~ga~~~~~l~al~i~~l~~~~~~~~ 83 (260)
-|.++|..+++............=.+..--+++..+-.|+++++.+.. .....++..+.+++..+..++++++.+.
T Consensus 65 ~A~lvGa~LavsG~l~Q~l~rNPLA~P~ilGvssGA~~g~~~~i~~~~~~~~~~~~~a~~g~~~~~~lv~~l~~~~~~~~ 144 (330)
T PRK10440 65 MALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDT 144 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999999995798889527579999999999999997346899999999999999999999995479983
Q ss_pred HH--HHHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 56--9999999999999999962-13-20013334433324422876705899998999999984245665412888999
Q gi|254780719|r 84 DA--ILGVITHSTISLALVILSF-MK-WVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELA 159 (260)
Q Consensus 84 da--~igi~~s~~~alg~llls~-~~-~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A 159 (260)
.. ..|+..+..++...-++.+ .+ +...+...|+.||....+|+|++.......+.....+...|++...+.|||.|
T Consensus 145 ~~liL~Giai~~~~~A~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~~l~lGd~~A 224 (330)
T PRK10440 145 FRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTA 224 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999999999999999479999999999983533488889999999999999999999988726763382888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf 980898106776999999999999999988999999999999999974199899999999999999999999999----9
Q gi|254780719|r 160 KAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL----I 235 (260)
Q Consensus 160 ~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~----~ 235 (260)
++.|+|+++.+...+.+.++.++.++..+|.+.+++ ++.|+.+.+...++ |+.++.|.+.|..-......++- .
T Consensus 225 ~sLGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVG-Li~PHiaR~l~g~~-~~~l~~sal~Ga~lll~aD~laR~l~~p 302 (330)
T PRK10440 225 CALGVSVERSRLLLMLVAVVLTAAATALAGPISFIA-LVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMP 302 (330)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 875987999999999999999999999704798999-75999999981778-6418999999999999999999764566
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5588089999999999999987239
Q gi|254780719|r 236 FDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 236 ~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
.++|.|-.+.++. ..|++.+++||
T Consensus 303 ~eiPvGivtaliG-aP~fi~Ll~r~ 326 (330)
T PRK10440 303 YQLPVGVVTVSLG-GIYLIVLLIQE 326 (330)
T ss_pred CCCCHHHHHHHHH-HHHHHHHHHHC
T ss_conf 5620999999998-99999999622
No 10
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=99.94 E-value=1.5e-23 Score=146.78 Aligned_cols=250 Identities=12% Similarity=0.123 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf 999999999998788999999879996435899999999999995003------667999999999999863103--576
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLP------LTICIFMIATLTSLVLLQIQK--NEA 80 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~------~~~ga~~~~~l~al~i~~l~~--~~~ 80 (260)
|+++|..+++....+......+=-+-.--++++.+-.|++++..+..+ ....++..+.++...+..+.+ |++
T Consensus 58 ailvGa~La~aG~llQ~l~rNPLA~P~iLGissGA~lg~~~~~~l~~~~~~~~~~~~~a~~g~~~~~~~v~~l~~~~~~~ 137 (323)
T PRK11228 58 AVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGYSLSFIAACGGGLSWLLVMTAGGGWRHT 137 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999946988896302045799999999999998888899999999999999999999999862678
Q ss_pred CHH--HHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 504--56999999999999-999996213200133344333244228767058999989999999842456654128889
Q gi|254780719|r 81 LSS--DAILGVITHSTISL-ALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157 (260)
Q Consensus 81 ~~~--da~igi~~s~~~al-g~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~ 157 (260)
.+. =...|+..+.+++. ..++....++...+...|++||....+|+|++.......+.....+...|++...+++||
T Consensus 138 ~~~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~v~~~~~~~~i~~~~~~~~~~~L~~l~lGd~ 217 (323)
T PRK11228 138 HDRNRLILAGIALSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDS 217 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 87189999999999999999999999481999999999955666888999999999999999999999987056745959
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99980898106776999999999999999988999999999999999974199899999999999999999999999---
Q gi|254780719|r 158 LAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL--- 234 (260)
Q Consensus 158 ~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~--- 234 (260)
.|++.|+|+++.|...+.+.++.++.++..+|.+.+++ ++.|+.+.+..+++.|+.++.|.++|.........++.
T Consensus 218 ~A~sLGv~v~~~r~~~l~~~~~l~a~~va~~G~I~FVG-LivPhiaR~l~g~~~~~~lp~sal~Ga~lll~aD~iaR~l~ 296 (323)
T PRK11228 218 TAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIG-LLVPHLARFWAGFDQRNVLPVSMLLGATLMLLADLLARALA 296 (323)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99878997999999999999999999996677162298-50999999981888751799999999999999999986615
Q ss_pred -HHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf -95588089999999999999987239
Q gi|254780719|r 235 -IFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 235 -~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
..++|.|-.+.++ +..|++.+++||
T Consensus 297 ~p~eiPvGivta~i-GaP~fi~Ll~Rr 322 (323)
T PRK11228 297 FPGELPAGAVLALI-GAPCFVWLARRR 322 (323)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHEECC
T ss_conf 66531099999999-899999831017
No 11
>pfam01032 FecCD FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.
Probab=99.93 E-value=9.8e-23 Score=142.29 Aligned_cols=249 Identities=17% Similarity=0.298 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 99999999999878899999987999643589999999999999500------3667999999999999863103-5765
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQL------PLTICIFMIATLTSLVLLQIQK-NEAL 81 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~------~~~~ga~~~~~l~al~i~~l~~-~~~~ 81 (260)
++++|..+++...........+=.+--.-+++..+-.|+++++.+.. .....++..+.++..++..+.+ +++.
T Consensus 49 ail~Ga~L~vsG~l~Q~l~rNpLA~P~iLGissgA~l~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~lv~~l~~~~~~~ 128 (312)
T pfam01032 49 ALLVGAALAVSGALLQTVTRNPLADPSILGVSSGAALGAVLAILLFGGSLSIFGLPLAAFIGALLAALLVLLLARKRGGL 128 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999847988883376588579999999999987677899999999999999999999999706898
Q ss_pred HH--HHHHHHHHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 04--5699999999999999999-621-3200133344333244228767058999989999999842456654128889
Q gi|254780719|r 82 SS--DAILGVITHSTISLALVIL-SFM-KWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157 (260)
Q Consensus 82 ~~--da~igi~~s~~~alg~lll-s~~-~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~ 157 (260)
+. -...|+..+..++...-++ .+. ++...++..|++||....+|+|++.............+...|++.....|||
T Consensus 129 ~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~W~~Gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~lG~~ 208 (312)
T pfam01032 129 SPLRLILAGIAVSALFSALTSLLLLLADPEALQSILFWLLGSLSGASWSDVLILLPLLLIGLLLLLLLARKLNLLALGDD 208 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 77999999999999999999999997699999999999715166888899999999999999999999876058874939
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99980898106776999999999999999988999999999999999974199899999999999999999999999---
Q gi|254780719|r 158 LAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL--- 234 (260)
Q Consensus 158 ~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~--- 234 (260)
.|++.|+|+++.+...+.+.++.++.++..+|.+.+.+ ++.|+.+.+...+++|+.++.|.+.|......+..++.
T Consensus 209 ~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvG-Li~Phiar~l~g~~~~~~l~~s~l~Ga~lll~aD~i~r~~~ 287 (312)
T pfam01032 209 VAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVG-LIVPHIARLLVGANHRRLLPLSALIGALLLLLADLLARTLL 287 (312)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99976998999999999999999999998016999899-74999999980888641899999999999999999997716
Q ss_pred -HHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf -9558808999999999999998723
Q gi|254780719|r 235 -IFDTPSGPSIIITSLFLFILSFFYK 259 (260)
Q Consensus 235 -~~~lp~g~~Iv~~~~~~f~~~~~~~ 259 (260)
..++|.|..+.++.+ .|++.++.|
T Consensus 288 ~p~eiPvgvvtaliG~-P~fi~ll~r 312 (312)
T pfam01032 288 APIELPVGIVTALIGA-PFFIYLLLR 312 (312)
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHHCC
T ss_conf 7665109999999999-999998619
No 12
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=99.93 E-value=8.9e-23 Score=142.53 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C----HHHHHHHHHHHHHHHHHHHHCCCC--CC
Q ss_conf 9999999999987889999998799964358999999999999950-0----366799999999999986310357--65
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQ-L----PLTICIFMIATLTSLVLLQIQKNE--AL 81 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~-~----~~~~ga~~~~~l~al~i~~l~~~~--~~ 81 (260)
|.++|..+++............=.+..--+++..+-.|++++..+. . +....++..++.+...+..+.++. +.
T Consensus 67 A~lvGaaLalsG~l~Q~l~rNPLA~P~ilGissGA~l~~vl~~~~~~~~~~~~~~~~a~~ga~~~~~~v~~l~~~~~~~~ 146 (335)
T PRK10441 67 GLLAGGALGLAGALMQTLTRNPLADPGILGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQL 146 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999947988784164588889999999999998777899999999999999999999999748987
Q ss_pred HH--HHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 04--5699999999999999-99962132001333443332442287670589999899999998424566541288899
Q gi|254780719|r 82 SS--DAILGVITHSTISLAL-VILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYEL 158 (260)
Q Consensus 82 ~~--da~igi~~s~~~alg~-llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~ 158 (260)
+. =...|+..+..++... .+....++...++..|++||....+|+|+........+.....+...|+++..+.+||.
T Consensus 147 ~~~~liL~Giai~~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~~l~lGd~~ 226 (335)
T PRK10441 147 SPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDT 226 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 54999999999999999999999992979999999997777557778999999999999999999999999999779699
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf 9980898106776999999999999999988999999999999999974199899999999999999999999999---9
Q gi|254780719|r 159 AKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL---I 235 (260)
Q Consensus 159 A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~---~ 235 (260)
|++.|+|+++.+...+.+.++.++.++..+|.+.+++ ++.|+.+.+...++.|..++.|.+.|..-......++. .
T Consensus 227 A~sLGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVG-Li~PHiaR~l~g~~~~~~lp~sal~Ga~lll~aD~~~R~~~p 305 (335)
T PRK10441 227 ATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIG-LMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVP 305 (335)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9868996999999999999999999999375386799-629999999818885408999999999999999999987566
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5588089999999999999987239
Q gi|254780719|r 236 FDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 236 ~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
.++|.|-.+.++.+.+|+ .++.||
T Consensus 306 ~eiPvGiitaliG~P~fl-~Ll~r~ 329 (335)
T PRK10441 306 GELRVSVVSAFIGAPVLI-FLVRRK 329 (335)
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHC
T ss_conf 561099999999899999-999826
No 13
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=99.93 E-value=3.1e-22 Score=139.60 Aligned_cols=249 Identities=15% Similarity=0.169 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999999999998788999999879996435899999999999995003------66799999999999986310357650
Q gi|254780719|r 9 ALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLP------LTICIFMIATLTSLVLLQIQKNEALS 82 (260)
Q Consensus 9 all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~~l~~~------~~~ga~~~~~l~al~i~~l~~~~~~~ 82 (260)
|+++|..+++....+-.....+=-+--.-+++..+-.|++++..++.+ ....++..++.+...+..++++++.+
T Consensus 64 a~l~Ga~LavsG~llQ~l~rNpLA~P~iLGissGA~l~~~~~~~~~~~~~~~~~~~~~a~~gal~~~~l~~~~~~~~~~~ 143 (330)
T PRK03784 64 VLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPGWALSLCAIAGALIITLILLRFARRHRLS 143 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999947988898503588999999999999987677799999999999999999999999547988
Q ss_pred HH--HHHHHHHHHHHHHHH-HHHHHCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 45--699999999999999-999621320-01333443332442287670589999899999998424566541288899
Q gi|254780719|r 83 SD--AILGVITHSTISLAL-VILSFMKWV-NTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYEL 158 (260)
Q Consensus 83 ~d--a~igi~~s~~~alg~-llls~~~~~-~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~ 158 (260)
.. ...|+..+..++... .++...++. ..+...|++||....+|+|++........ ........|++...+++||.
T Consensus 144 ~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~-~~~~~~~~r~L~~L~LGd~~ 222 (330)
T PRK03784 144 TARLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQGRPLNMLALGETS 222 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCHHHHCCHHH
T ss_conf 15899999999999999999999958999999999997265457988899999999999-99999998656042179488
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9980898106776999999999999999988999999999999999974199899999999999999999999999----
Q gi|254780719|r 159 AKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL---- 234 (260)
Q Consensus 159 A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~---- 234 (260)
|++.|+|+++.+...+...++.++.++..+|.+.+++ ++.|+.+.+...+++|..++.|.+.|..-......++-
T Consensus 223 A~~LGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVG-Li~PhiaR~l~g~~~~~llp~sal~Ga~lll~aD~~~R~l~~ 301 (330)
T PRK03784 223 ARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIG-LVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALA 301 (330)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9878998999999999999999999999311587399-629999999807775059999999999999999999856256
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95588089999999999999987239
Q gi|254780719|r 235 IFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 235 ~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
..++|.|-.+.++.+..|+ .+++|+
T Consensus 302 p~elPvGivtaliG~P~fi-~Ll~r~ 326 (330)
T PRK03784 302 SAELPIGVVTATLGAPVFI-WLLLRS 326 (330)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf 6652099999999899999-989844
No 14
>COG0609 FepD ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.4e-20 Score=130.49 Aligned_cols=247 Identities=17% Similarity=0.257 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999987889999----998799964358999999999999950---0-----36679999999999998631035
Q gi|254780719|r 11 FSGIGIVLSTGPLGCFI----IWQRIAYFGDTIAHSALLGVALSLIFQ---L-----PLTICIFMIATLTSLVLLQIQKN 78 (260)
Q Consensus 11 l~~~~~~~~~~~lG~~v----v~rr~s~~~~alsH~a~~Gial~~~l~---~-----~~~~ga~~~~~l~al~i~~l~~~ 78 (260)
+.+.+.+...+..|... ...--+...-+++..+-.|+++...+. . ...+.++.++..+...+..+.++
T Consensus 59 l~a~l~Ga~LavsG~~lQ~v~rNpLAdP~ilGIssGA~~~~~l~i~~~~~~~~~~~~~l~~~af~ga~~~~~lv~~ia~~ 138 (334)
T COG0609 59 LLAILVGAALAVAGALLQGVTRNPLADPGILGISSGASLGAVLAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARL 138 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999548789932305655699999999999840100378999999999999999999999985
Q ss_pred CCC--HHH--HHHHHHHHHHHHHHHHHHH-HCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765--045--6999999999999999996-2132--00133344333244228767058999989999999842456654
Q gi|254780719|r 79 EAL--SSD--AILGVITHSTISLALVILS-FMKW--VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLA 151 (260)
Q Consensus 79 ~~~--~~d--a~igi~~s~~~alg~llls-~~~~--~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~ 151 (260)
++. +.. ...|+..+..++...-.+. ..++ ...+...|++||+...+|+|++.......+.........|+++.
T Consensus 139 ~~~~~~~~~liL~Giais~~~~al~~~l~~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~i~l~~~~~~~~~l~i 218 (334)
T COG0609 139 RGGGLSPLRLILAGIALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLSRKLNI 218 (334)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 16888838999999999999999999999966738777784987505645587788899999999999999999774767
Q ss_pred HCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12888999980898106776999999999999999988999999999999999974199899999999999999999999
Q gi|254780719|r 152 TTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLY 231 (260)
Q Consensus 152 ~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~ 231 (260)
...|||.||+.|+|+++.+...+.+.++.++.++..+|.+..++ ++.|+.+.+...+++|..+..|.++|..-......
T Consensus 219 l~lgd~~A~~LGi~v~~~r~~~~i~a~llt~~~Vs~~G~I~FVG-Li~PHiaR~lvg~~~r~lip~s~l~Ga~lll~aD~ 297 (334)
T COG0609 219 LSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVG-LIAPHIARLLVGNDHRYLLPLSALLGALLLLLADI 297 (334)
T ss_pred HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 54498999877987899999999999999999999812168888-63899999982876422178789999999999999
Q ss_pred HHH----HHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 999----9558808999999999999998723
Q gi|254780719|r 232 GSL----IFDTPSGPSIIITSLFLFILSFFYK 259 (260)
Q Consensus 232 lS~----~~~lp~g~~Iv~~~~~~f~~~~~~~ 259 (260)
++. ..++|.|-.+.++.+..|+ .+++|
T Consensus 298 ~~R~i~~p~e~pvGiitaliGaP~Fi-yLl~r 328 (334)
T COG0609 298 LARTILAPAEIPVGIVTALIGAPYFI-YLLRK 328 (334)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf 99863473234589999999999999-99998
No 15
>COG4606 CeuB ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.1e-14 Score=95.88 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C---HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999878899----99998799964358999999999999950--0---36679999999999998631035765
Q gi|254780719|r 11 FSGIGIVLSTGPLGC----FIIWQRIAYFGDTIAHSALLGVALSLIFQ--L---PLTICIFMIATLTSLVLLQIQKNEAL 81 (260)
Q Consensus 11 l~~~~~~~~~~~lG~----~vv~rr~s~~~~alsH~a~~Gial~~~l~--~---~~~~ga~~~~~l~al~i~~l~~~~~~ 81 (260)
++.++.+...+..|- ..-.|=.+.-..+..++|-.|+.+..++- . ...+.++.+++...+.-..+-+|-+.
T Consensus 54 ~aIlLaG~smsvaGLIMQ~ltqNrFv~PstaGT~e~A~LGill~l~~fp~a~~~~kmlvA~v~al~Gt~~F~~~l~ri~~ 133 (321)
T COG4606 54 LAILLAGSSMSVAGLIMQQLTQNRFVEPSTAGTTESAKLGILLSLLLFPSASLLIKMLVAFVFALAGTLLFMMILRRIKL 133 (321)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999430888999999999854766886544487877507677555078728999999999999999999999975563
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 04---569999999999999999962132001333443332442287670589999899999998424566541288899
Q gi|254780719|r 82 SS---DAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYEL 158 (260)
Q Consensus 82 ~~---da~igi~~s~~~alg~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~ 158 (260)
++ --.+|+++..-.+.-.-+..+--+.-+++.+|+-||...+.+.+ |....+.......-+.+-+++.....+||+
T Consensus 134 k~~i~VPLiGIm~Ggvi~sitTFiAy~~dllQ~l~~W~~G~Fs~v~~Gr-YElL~i~~~l~i~ay~~AdrfTi~GmGedf 212 (321)
T COG4606 134 KDVLFVPLIGIMFGGVISSITTFIAYRFDLLQSLGAWLQGDFSGVLRGR-YELLWISIPLAILAYLFADRFTIAGMGEDF 212 (321)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC-EEEEHHHHHHHHHHHHHHHHEEEECCCHHH
T ss_conf 4547632499998859999999999999999986687607538775153-256167899999999986032452055666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_conf 9980898106776999999999999999988999999999999999974199899999999999----999999999999
Q gi|254780719|r 159 AKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIG----ILGIIIGLYGSL 234 (260)
Q Consensus 159 A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g----~~~~~~G~~lS~ 234 (260)
+.-.|.|-+..-.+=+.++++++++-+-.||.+-+.+ +++|-...+..++|.|+-.+|-++.| +.|.+.|-.+.|
T Consensus 213 s~NLGLnY~~v~~igl~iValitsvVvvtVG~lPFLG-LIvPNiVs~~~GDnLr~~lp~val~Ga~~VL~CDIigRvii~ 291 (321)
T COG4606 213 SVNLGLNYNRVVNIGLFIVALITSVVVVTVGMLPFLG-LIVPNIVSLYRGDNLRQNLPWVALLGALFVLLCDIIGRVIIF 291 (321)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCE-EEHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 6650724999999999999997503799985765121-411247789845544323559999731999999864236875
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95588089999999999999987239
Q gi|254780719|r 235 IFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 235 ~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
.|++|.|-.+.+..+.+|+.-+.++|
T Consensus 292 PyEipis~~~GViGs~vFl~LllR~~ 317 (321)
T COG4606 292 PYEIPISLILGVIGSAVFLLLLLRGR 317 (321)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 55131678799888999999998135
No 16
>COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.9e-13 Score=89.86 Aligned_cols=200 Identities=14% Similarity=0.181 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC-CHHHH--HHHHHHHHHH-HHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 67999999999999863103576-50456--9999999999-9999999621-320013334433324422876705899
Q gi|254780719|r 58 TICIFMIATLTSLVLLQIQKNEA-LSSDA--ILGVITHSTI-SLALVILSFM-KWVNTDLTSFLFGDILAVNTTDILLIW 132 (260)
Q Consensus 58 ~~ga~~~~~l~al~i~~l~~~~~-~~~da--~igi~~s~~~-alg~llls~~-~~~~~~l~~~LfG~il~v~~~dv~~~~ 132 (260)
..+++..+...++.++.+.+|+. .++.- ..||--..+. ++--.++.+. -+......-|+-||+...+|+|++...
T Consensus 134 ~~aAi~GGi~TA~avylla~r~g~~~~~RLIivGIGvgA~L~a~n~~ll~~a~le~A~ta~lW~aGSLn~~~W~~v~p~~ 213 (346)
T COG4779 134 ALAAIAGGIVTALAVYLLAWRNGTIGGFRLIIVGIGVGAMLVAFNTWLLVQADLEQAMTAGLWLAGSLNGLTWAHVLPSL 213 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999866899999999998237767638999940199999999988974402988899999854884557688888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99899999998424566541288899998089810677699999999999999998899999999999999997419989
Q gi|254780719|r 133 GIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPE 212 (260)
Q Consensus 133 ~~~~~~~~~l~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~ 212 (260)
....+++-.....-|++.+...++|.|...|++++..|+..+..-...++....+.|.+-+++ +..|. .||.++++.+
T Consensus 214 ~~~~vi~p~~~~l~R~lr~lEmGDd~A~~LGV~vertRL~~ilvaV~lta~aTaaAGPIaFIA-LaAPQ-iArrL~~t~g 291 (346)
T COG4779 214 LILAVILPAAAYLVRRLRLLEMGDDIACALGVSVERTRLLMILVAVALTAAATAAAGPIAFIA-LAAPQ-IARRLSGTAG 291 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HCCHH-HHHHHHCCCC
T ss_conf 999999999999998888876015677651735328889999999999999997346534565-52369-9999735899
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999----9999999995588089999999999999987239
Q gi|254780719|r 213 NMAILATIIGILGI----IIGLYGSLIFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 213 ~~~~~s~~~g~~~~----~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
.-...+.+.|..-- +....+...+++|.|- +....+.+|++.++.||
T Consensus 292 v~L~~~almGa~LLlaADll~q~l~~~~~lPVG~-vT~~lGG~Yl~~LL~r~ 342 (346)
T COG4779 292 VSLLAAALMGALLLLAADLLAQHLFTPYRLPVGV-VTVSLGGIYLIWLLIRE 342 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-EEEECCHHHHHHHHHHH
T ss_conf 3058889988799999999997436231377057-87531459999999998
No 17
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=8.2e-09 Score=66.23 Aligned_cols=190 Identities=18% Similarity=0.244 Sum_probs=143.4
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999863103--576504569999999999999999962--132001333443332442287670589999899999998
Q gi|254780719|r 68 TSLVLLQIQK--NEALSSDAILGVITHSTISLALVILSF--MKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILF 143 (260)
Q Consensus 68 ~al~i~~l~~--~~~~~~da~igi~~s~~~alg~llls~--~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~ 143 (260)
+..+-.|+-+ ++..+---.+|+++...+..---++.. .|+.-..+++=+|+|.-.+++|-++....+.....++.+
T Consensus 115 sl~Ly~~lf~~~~r~l~~~lLiGlv~G~lFrSiSsfmq~liDPneF~~lQ~~mFAsFn~int~ll~i~a~i~~~~~v~~~ 194 (316)
T COG4605 115 SLLLYYWLFSGGGRDLHLLLLIGLVLGTLFRSISSFMQRLIDPNEFAILQARMFASFNNINTELLAIAAIILLVVTVYLF 194 (316)
T ss_pred HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999945887511899999999888888999999975958899999987754302673079999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHH
Q ss_conf 42456654128889999808981067769999999999999999889999999999999999741998999--9999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENM--AILATII 221 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~--~~~s~~~ 221 (260)
+..|.+.-.+.++|.|.-.|++.++..-..+.++++-++.+...||.+...++++ +--|+.+.|++|+- .+.+.++
T Consensus 195 r~~~~LDVl~LgRd~AinLGi~y~k~~~~lL~ivavLvsvSTALVGPitFlGlLv--anLay~~~~tykH~~ll~~~ili 272 (316)
T COG4605 195 RYRKVLDVLSLGRDTAINLGIDYEKVTKILLLIVAVLVSVSTALVGPITFLGLLV--ANLAYEFSKTYKHSYLLPAAILI 272 (316)
T ss_pred HHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHCCCCEEEHHHHHHHH
T ss_conf 9877502633376667651862688788999999999999998844299999999--99999984434511046899999
Q ss_pred HHHHHHHHHHH-HHHH--CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999-9995--588089999999999999987239
Q gi|254780719|r 222 GILGIIIGLYG-SLIF--DTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 222 g~~~~~~G~~l-S~~~--~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
|.++-..|-+. ...+ +.+-+-.|-.+.+..| +.++.||
T Consensus 273 ~~i~L~ggQ~vve~Vf~~~t~lSviIefvGG~~F-iyLllr~ 313 (316)
T COG4605 273 GVIALVGGQFVVERVFAFQTTLSVIIEFVGGIYF-IYLLLRR 313 (316)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHE-EEEEEEC
T ss_conf 9999981299999998427637862032052413-7678715
No 18
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=99.00 E-value=3.9e-08 Score=62.53 Aligned_cols=224 Identities=16% Similarity=0.219 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHC--CHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998788999999879996435899999999--------9999950--036----679999999999998631
Q gi|254780719|r 10 LFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGV--------ALSLIFQ--LPL----TICIFMIATLTSLVLLQI 75 (260)
Q Consensus 10 ll~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gi--------al~~~l~--~~~----~~ga~~~~~l~al~i~~l 75 (260)
.++..+++-..+.-|.-+ +.++++-+++--..|+ +.+.+++ .++ ...+...+++...+....
T Consensus 60 ~lAv~~vGAsLAVsGAvm----QaL~~N~LAEPGllGVs~GA~Valv~~vL~~~~l~~~~a~~~~Ai~GALl~TliLl~~ 135 (326)
T COG4139 60 TLAVLLVGAALAVSGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRF 135 (326)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999727888708999----9996586668763431588409999999974775758999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-----CCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0357650456999999999999999996213-----200---13334433324422876705899998999999984245
Q gi|254780719|r 76 QKNEALSSDAILGVITHSTISLALVILSFMK-----WVN---TDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWK 147 (260)
Q Consensus 76 ~~~~~~~~da~igi~~s~~~alg~llls~~~-----~~~---~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r 147 (260)
.||.+... -.+-.+.++|++.-.... +.+ ..++-|+.|+..+++|.+-+.... ..-.++.+....|
T Consensus 136 aRr~~lTa-----rLLLvGVALGIi~~A~mTWA~YFS~sL~LRQLMYWmMG~~~GVdW~Q~~L~La-~~PvvIWl~~Qg~ 209 (326)
T COG4139 136 ARRHLSTS-----RLLLAGVALGIICSALMTWAIYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLA-LIPVLIWICCQSR 209 (326)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHHHHHHHHCCCC
T ss_conf 99999898-----99999999999888785620031065269999999967756742999989999-9778886101676
Q ss_pred HHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 66541288899998089810677699999999999999998899999999999999997419989999999999999999
Q gi|254780719|r 148 PLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGII 227 (260)
Q Consensus 148 ~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~ 227 (260)
+++..+.+|..||..|++...+|..+..-++..+..++...|++.+++ +++|+.-..-...+.|.....+.+-|...-.
T Consensus 210 vLn~l~LGE~~ArQLG~~lh~~R~~LvLAi~llVG~SVAL~GvIgFiG-LViPHiLRLt~~td~RlLLp~~Al~Ga~~Ll 288 (326)
T COG4139 210 PLNMLALGEISARQLGLPLWFWRNVLVLATGWMVGVSVALAGAIGFIG-LVIPHILRLCGLTDHRLLLPGCALAGASALL 288 (326)
T ss_pred CCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHCCHHHH
T ss_conf 314776251468872971899999999999999868999752776766-7688999983574232012514650327999
Q ss_pred HHHHHHHH----HCCCCHHHH
Q ss_conf 99999999----558808999
Q gi|254780719|r 228 IGLYGSLI----FDTPSGPSI 244 (260)
Q Consensus 228 ~G~~lS~~----~~lp~g~~I 244 (260)
..-..+.. -++|.|-..
T Consensus 289 ~AD~vARlaL~S~ELPiGVVT 309 (326)
T COG4139 289 LADIVARLALASAELPIGVVT 309 (326)
T ss_pred HHHHHHHHHHCCCCCCCEEEE
T ss_conf 999999987123677732687
No 19
>PRK09699 D-allose transporter subunit; Provisional
Probab=97.15 E-value=0.013 Score=32.40 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCC---CCHHHHHHHHHHHHHHCCHHHH
Q ss_conf 6679999999999998----631035765045699999999999999999-6213---2001333443332442287670
Q gi|254780719|r 57 LTICIFMIATLTSLVL----LQIQKNEALSSDAILGVITHSTISLALVIL-SFMK---WVNTDLTSFLFGDILAVNTTDI 128 (260)
Q Consensus 57 ~~~ga~~~~~l~al~i----~~l~~~~~~~~da~igi~~s~~~alg~lll-s~~~---~~~~~l~~~LfG~il~v~~~dv 128 (260)
+.+.+...+++....+ .++..+.+.++ .+...-+....-|.... +..+ +.+.+...+.-|++..++..-+
T Consensus 103 ~~~~a~l~~l~~g~~iG~iNG~lv~~~~ip~--fIvTLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~giP~~~~ 180 (325)
T PRK09699 103 PFLAALIGGVLVGGALGAINGCLVNWTGLHP--FIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVI 180 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCCCCCHHHHH
T ss_conf 1999999999999999999859777508775--99999999999988883218951257998999986232135529999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999989999999--8424566541288899998089810677699999999999999998899999999999999997
Q gi|254780719|r 129 LLIWGIGFLNIMIL--FKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARR 206 (260)
Q Consensus 129 ~~~~~~~~~~~~~l--~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~ 206 (260)
+... +..+...++ -.+-|++.++.=|||-||..|+|+++++..-+.+.++.... .|.++..- += . ..-.
T Consensus 181 i~~~-~~~v~~~ll~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~a~l----AGil~~~r-~~--s-~~p~ 251 (325)
T PRK09699 181 FSLI-VALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGL----AGVVSTAR-LG--A-AEPL 251 (325)
T ss_pred HHHH-HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCHHEEEEHHHHHHHHHHH----HHHHHHHH-HC--C-CCCC
T ss_conf 9999-9999999982181410344657899999884887134044338987899999----99999998-57--8-4814
Q ss_pred HHCCHHHHHHHHHHHH
Q ss_conf 4199899999999999
Q gi|254780719|r 207 FSTSPENMAILATIIG 222 (260)
Q Consensus 207 l~~~~~~~~~~s~~~g 222 (260)
..+++.-..+.+..+|
T Consensus 252 ~G~~~~l~aIaAvVlG 267 (325)
T PRK09699 252 AGMGFETYAIASAIIG 267 (325)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 2743378899999973
No 20
>cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.03 E-value=0.017 Score=31.74 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-H---HHHHHH---HHHHHHHHHHHHHHHHH--CCHHHHH
Q ss_conf 2456654128889999808981067769999999999999-9---998899---99999999999999741--9989999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVS-I---KFIGIT---LITSLLILPTVTARRFS--TSPENMA 215 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~-v---~~vG~l---lv~allv~Paa~A~~l~--~~~~~~~ 215 (260)
+-|++.+..-|||.||..|+|+++++..-+.+.+.....+ + ...+.. .......+.+.++-.+. .|..-.+
T Consensus 147 ~G~~irAvg~n~~aA~~~GInv~rv~~~~f~isg~laglaG~l~~~~~~~~~p~~~g~~~~~~~~~~~vlGG~gsi~Ga~ 226 (268)
T cd06581 147 FGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPV 226 (268)
T ss_pred CCEEHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHH
T ss_conf 66358875328599997796899999999999999999999999987166180130189999999886154887659999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999558808999999999999998723
Q gi|254780719|r 216 ILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLFILSFFYK 259 (260)
Q Consensus 216 ~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~ 259 (260)
+-+.+++........+.+.+.+ .+.+.+.++.+++|
T Consensus 227 iG~lilg~~~~~~~~~~~~~~~--------~~~~~ili~vll~r 262 (268)
T cd06581 227 LGAALLVLLPELLRSLGPGLRL--------LVFGLLLILVVLFL 262 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHC
T ss_conf 9999999999999986078999--------99999999999985
No 21
>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=96.94 E-value=0.021 Score=31.28 Aligned_cols=144 Identities=9% Similarity=0.103 Sum_probs=69.4
Q ss_pred HHHHHHHHHHH--HHHH----HCCHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf 58999999999--9999----5003667---9999999999998631035765045699999999999999999621---
Q gi|254780719|r 38 TIAHSALLGVA--LSLI----FQLPLTI---CIFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFM--- 105 (260)
Q Consensus 38 alsH~a~~Gia--l~~~----l~~~~~~---ga~~~~~l~al~i~~l~~~~~~~~da~igi~~s~~~alg~llls~~--- 105 (260)
-++|.++.+.. .+.. .+.++.. .+...+.+.+.....+..|.+.++ ............+.......
T Consensus 29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~--~~~tl~~~~~~~~~~~~~~~~~~ 106 (267)
T pfam02653 29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPE--VIVTLLLNFILRGLTLFLLTGIL 106 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5799999999999999999980530899999999999999997458676521429--99999999999999999986355
Q ss_pred CC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 32--001333443332442287670589999899999998-----42456654128889999808981067769999999
Q gi|254780719|r 106 KW--VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILF-----KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITS 178 (260)
Q Consensus 106 ~~--~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~-----~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~a 178 (260)
++ ............-...++.+.+.......+...... .+-|.+....=|||.||..|+|+++++..-+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~ 186 (267)
T pfam02653 107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG 186 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78877555532554200211257999999999999999999995888469999966599998869988999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780719|r 179 LMISV 183 (260)
Q Consensus 179 l~v~~ 183 (260)
.....
T Consensus 187 ~lagl 191 (267)
T pfam02653 187 ALAGL 191 (267)
T ss_pred HHHHH
T ss_conf 99999
No 22
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.81 E-value=0.026 Score=30.69 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2456654128889999808981067769999999999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
+.|.+....=|||.|++.|+|+++++..-+.+-+..-
T Consensus 191 ~G~~lrAvr~ne~aa~~lGinv~r~k~~aF~isa~la 227 (313)
T TIGR03408 191 FGRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIA 227 (313)
T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9898885761669998828829999999999999999
No 23
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=96.79 E-value=0.028 Score=30.58 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 424566541288899998089810677699999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
.+-|++....-|||.||..|+|+++++..-+.+-+....
T Consensus 144 ~~G~~lrAvg~n~~aA~~~GInv~r~~~~af~isg~lag 182 (266)
T cd06574 144 KLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAA 182 (266)
T ss_pred HHHHHHEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 784854134388799998699757888789999999999
No 24
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=96.70 E-value=0.033 Score=30.19 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--HH
Q ss_conf 9986310357650456999999999999999996-2132---0013334433324422876705899998999999--98
Q gi|254780719|r 70 LVLLQIQKNEALSSDAILGVITHSTISLALVILS-FMKW---VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMI--LF 143 (260)
Q Consensus 70 l~i~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~---~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~--l~ 143 (260)
+.-.++..+.+.+. .+...-+....-|+...- ..+. .+.+...+-.|++..+...-++.. .+..+...+ .-
T Consensus 123 ~iNG~lv~~~~ip~--fI~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~gip~~~~i~i-i~~~~~~~~l~~T 199 (327)
T PRK11285 123 LVNGFVIARLRINA--LITTLATMQIVRGLAYIISDGKAVGISDERFFALGYASFFGVPAPIWLTV-ACFVVFGFLLNKT 199 (327)
T ss_pred HHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHEECCCEEECCCCHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHC
T ss_conf 99838676107857--99999999999987853328843255888999851384237548999999-9999999999634
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 424566541288899998089810677699999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
.+-|++..+.=|||-||..|+|+++++..-+.+.+....
T Consensus 200 ~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~lag 238 (327)
T PRK11285 200 VFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSA 238 (327)
T ss_pred CCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 054599881698999988189833740199999999999
No 25
>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge
Probab=96.49 E-value=0.046 Score=29.39 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2456654128889999808981067769999999999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
+-|++....=|||.||+.|+|+++++..-+.+-+...
T Consensus 141 ~G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~la 177 (263)
T cd06579 141 FGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLA 177 (263)
T ss_pred CCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6110443131899999839986896548998989999
No 26
>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=96.35 E-value=0.055 Score=28.95 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 245665412888999980898106776999999999999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISV 183 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~ 183 (260)
+-|.+..+.=|||-||..|+|+++++..-+.+.+.....
T Consensus 153 ~Gr~l~Ai~~n~~aA~~~Ginv~r~k~~af~isg~lagl 191 (272)
T cd06582 153 LGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGL 191 (272)
T ss_pred CCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 045684763398999885998889879998999999999
No 27
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.057 Score=28.85 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCC-HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 99986310357650456999999999999999996-21320-01333443-3324422876705899998999999-984
Q gi|254780719|r 69 SLVLLQIQKNEALSSDAILGVITHSTISLALVILS-FMKWV-NTDLTSFL-FGDILAVNTTDILLIWGIGFLNIMI-LFK 144 (260)
Q Consensus 69 al~i~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~~-~~~l~~~L-fG~il~v~~~dv~~~~~~~~~~~~~-l~~ 144 (260)
...-.++..+.+.+. .+...-+....-|..+.- ..... ..+..+++ .|++..++..-++........-..+ --.
T Consensus 106 G~iNG~lv~~~~ip~--fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~l~rT~ 183 (316)
T COG1172 106 GLINGLLVARLRIPP--FIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLLLRRTR 183 (316)
T ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998989999817882--999888999999999887099267797899984358542870999999999999999984560
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 24566541288899998089810677699999999999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
+-|.+....=|||-||..|+|+++++..-+.+.++.-.
T Consensus 184 ~Gr~iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAa 221 (316)
T COG1172 184 FGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAA 221 (316)
T ss_pred CCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHH
T ss_conf 14789897898999998498812244246899999999
No 28
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed
Probab=96.02 E-value=0.083 Score=27.98 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCH-HHHHHHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCH----H--H
Q ss_conf 9999999995003-6679999999999998----6310357650456999999999999999996-213200----1--3
Q gi|254780719|r 44 LLGVALSLIFQLP-LTICIFMIATLTSLVL----LQIQKNEALSSDAILGVITHSTISLALVILS-FMKWVN----T--D 111 (260)
Q Consensus 44 ~~Gial~~~l~~~-~~~ga~~~~~l~al~i----~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~~~----~--~ 111 (260)
+.++..+.+.+.+ +.+.+...+++..... ..+..+.+.+. .+...-+....-|....- .....+ . +
T Consensus 82 l~~~~~~~l~~~~~~~~lai~~~l~~G~~~G~iNG~lV~~~~ip~--~I~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~ 159 (321)
T PRK09512 82 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQA--FIATLVMMLLLRGVTMVYTDGSPINTGFTDNAD 159 (321)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 999999998436897899999999999999999858776336777--999999999999999998299212467764358
Q ss_pred -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -3344333244228767058999989999999--8424566541288899998089810677699999999999
Q gi|254780719|r 112 -LTSFLFGDILAVNTTDILLIWGIGFLNIMIL--FKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 112 -l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l--~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
....-.|+...++.. ++....+..+...++ -.+-|++.++.=|||-||..|+|+++++..-+.+.+....
T Consensus 160 ~~~~~~~g~~~gip~~-~~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~lag 232 (321)
T PRK09512 160 LFGWFGIGRPLGVPTP-VWIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAA 232 (321)
T ss_pred HHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHH
T ss_conf 9999743651565699-999999999999999866887488797798999998098851488747999999999
No 29
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=95.78 E-value=0.11 Score=27.40 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 424566541288899998089810677699999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
.+-|++.++.=|||-||..|+|+++++..-+.+.+....
T Consensus 184 ~~GR~lyAvG~N~~AA~~sGI~v~r~~i~~fvisG~~ag 222 (317)
T PRK11618 184 RFGNNVYAIGGNATSANLMGVPVRRTTIRIYALSGFLAA 222 (317)
T ss_pred HHHCEEEEECCCHHHHHHCCCCCHHEEEHHHHHHHHHHH
T ss_conf 200668886798999999499823422079999999999
No 30
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=95.71 E-value=0.11 Score=27.23 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-CCH
Q ss_conf 42456654128889999808981067769999999999999999889999999-----------999999999741-998
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSL-----------LILPTVTARRFS-TSP 211 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~al-----------lv~Paa~A~~l~-~~~ 211 (260)
.+-|++....-|||.||..|+|+++++..-+.+.+..... .|.+++.+. .-..+.++-.++ +|+
T Consensus 116 ~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGl----aG~~~~~~~~~~~~~~~~~g~g~~aia~~ilg~~~p 191 (234)
T cd06580 116 RFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGL----AGAYLVLGVQGRFTEGMSAGYGFIAIAVALLGRWNP 191 (234)
T ss_pred HHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 7874500331889999887988889999999999999999----999999865025776776661499999999979988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999999999999999995588089999999
Q gi|254780719|r 212 ENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITS 248 (260)
Q Consensus 212 ~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~ 248 (260)
-...+.+.+++.+.. .+..+....+.|+.-.-.+-.
T Consensus 192 ~g~~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~ 227 (234)
T cd06580 192 LGILLAALLFGALEA-GGIALQRSGGVPSELVQVLPG 227 (234)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999999-999997617999999999999
No 31
>PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional
Probab=95.54 E-value=0.13 Score=26.87 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 4245665412888999980898106776999999999999999988999999999999999974199899999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIG 222 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g 222 (260)
.+-|++..+.=|||-||..|+|+++++..-+.+.++.... .|.+.. +-+= . ..-...+++.-..+.+..+|
T Consensus 205 ~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~aal----aGil~~-~r~~--s-~~~~~G~~~el~aIaAvviG 275 (336)
T PRK09478 205 RFGKNIFAIGGNPEAAKVSGVNVALNLLMIYALSGVFYAF----GGMLEA-GRIG--S-ATNNLGFMYELDAIAACVVG 275 (336)
T ss_pred HHHEEEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHH----HHHHHH-HHHC--C-CCCCCCCCHHHHHHHHHHHC
T ss_conf 5433634645989999882898401330899888999999----999999-9848--8-38265753478999999975
No 32
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional
Probab=95.01 E-value=0.2 Score=25.93 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 2456654128889999808981067769999999999999999889999999-999999999741998999999999999
Q gi|254780719|r 145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSL-LILPTVTARRFSTSPENMAILATIIGI 223 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~al-lv~Paa~A~~l~~~~~~~~~~s~~~g~ 223 (260)
+-|.+..+-=||+-|++.|+|+.+++..-+.+-+... -..|.+...-. .+-|.. ++-......+.-..+|-
T Consensus 286 ~GRal~AIRedE~AA~alGInv~r~KL~AFalsA~~A----GlAGaLyA~~~g~IsP~~----F~~~~S~~iL~mVVlGG 357 (416)
T PRK11301 286 LGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFA----GFAGTFFAARQGFVSPES----FTFIESAFILAIVVLGG 357 (416)
T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHCCEECCCC----CCHHHHHHHHHHHEECC
T ss_conf 8589999962799999859776999999999999999----999999998816348330----65999999797513327
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780719|r 224 LGIIIGLYG 232 (260)
Q Consensus 224 ~~~~~G~~l 232 (260)
.++..|-.+
T Consensus 358 ~Gs~~G~il 366 (416)
T PRK11301 358 MGSQLGVIL 366 (416)
T ss_pred CCCCHHHHH
T ss_conf 645199999
No 33
>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=95.00 E-value=0.2 Score=25.91 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=40.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22876705899998999999984-----2456654128889999808981067769999999999
Q gi|254780719|r 122 AVNTTDILLIWGIGFLNIMILFK-----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 122 ~v~~~dv~~~~~~~~~~~~~l~~-----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
..+..|++.......+......+ +-|.+....-|||.|++.|+|+++++..-..+-+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lA 193 (283)
T TIGR03622 129 TYSTYRVFLPLVAIGVLVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLA 193 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 23299999999999999999999986889898899965899997769787489999999999999
No 34
>PRK10740 branched-chain amino acid transporter permease subunit LivH; Reviewed
Probab=94.78 E-value=0.23 Score=25.58 Aligned_cols=174 Identities=13% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCCHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-------CCHHHHH----
Q ss_conf 900698--999999999999987889-----999998799964358999999999--99995-------0036679----
Q gi|254780719|r 1 MYNEFF--IRALFSGIGIVLSTGPLG-----CFIIWQRIAYFGDTIAHSALLGVA--LSLIF-------QLPLTIC---- 60 (260)
Q Consensus 1 m~~~f~--~~all~~~~~~~~~~~lG-----~~vv~rr~s~~~~alsH~a~~Gia--l~~~l-------~~~~~~g---- 60 (260)
|-|||| ...++-++..+..-+++. .|=+.|...| +|.++..+. .++.+ +.+..+.
T Consensus 1 ~~~~~~~~lq~l~~Gl~~G~iyaL~AlGl~Li~G~~gv~Nf-----ahg~f~~~GaY~~~~l~~~~~~~~~~~~~~~~~~ 75 (308)
T PRK10740 1 MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINF-----AHGEVYMIGSYVSFMIIAALMMMGIDTSWLLVAA 75 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 94389999999999999999999999999999999577979-----9999999999999999999885653147999999
Q ss_pred HHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---CCCCH-HHHHH-----HHHHH----HHHC
Q ss_conf 99999999999863----103576504569999999999999999962---13200-13334-----43332----4422
Q gi|254780719|r 61 IFMIATLTSLVLLQ----IQKNEALSSDAILGVITHSTISLALVILSF---MKWVN-TDLTS-----FLFGD----ILAV 123 (260)
Q Consensus 61 a~~~~~l~al~i~~----l~~~~~~~~da~igi~~s~~~alg~llls~---~~~~~-~~l~~-----~LfG~----il~v 123 (260)
++..+.+.+....+ ...|+..++|.....+.+..+ ..++.+. ..+.+ ....+ +-+|+ -..+
T Consensus 76 ~~~~a~v~~~~~g~~i~r~~~r~~~~~~~~~~li~t~gl--~~~l~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~ 153 (308)
T PRK10740 76 GFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGM--SIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASI 153 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 999999999999999999999986445259999999999--999999999803977650785456754235554543332
Q ss_pred CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 87670589999899999998-----42456654128889999808981067769999999999
Q gi|254780719|r 124 NTTDILLIWGIGFLNIMILF-----KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 124 ~~~dv~~~~~~~~~~~~~l~-----~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
+..++........+...+.. .+-|.+.+..-|||.|++.|+|+++++..-..+-+...
T Consensus 154 ~~~~l~~~~v~~~~~~~l~l~l~rT~~G~a~RAv~~n~~~A~~~GIn~~rv~~~af~i~~~la 216 (308)
T PRK10740 154 TTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMA 216 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 199999999999999999999972839689999966788998909889999999999999999
No 35
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.19 E-value=0.48 Score=23.81 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=42.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 422876705899998999999984-----24566541288899998089810677699999999999
Q gi|254780719|r 121 LAVNTTDILLIWGIGFLNIMILFK-----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 121 l~v~~~dv~~~~~~~~~~~~~l~~-----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
...++++++.......+...+... +-|.+..+.=|||.|++.|+|+++++..-..+-+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~lag 204 (291)
T TIGR03409 138 LSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAG 204 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2231999999999999999999998378565888887247999998599899999999999999999
No 36
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.12 E-value=0.49 Score=23.75 Aligned_cols=229 Identities=16% Similarity=0.166 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHH---HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999987--88999999879996435899999999999---995003667---99999999999986310357
Q gi|254780719|r 8 RALFSGIGIVLSTG--PLGCFIIWQRIAYFGDTIAHSALLGVALS---LIFQLPLTI---CIFMIATLTSLVLLQIQKNE 79 (260)
Q Consensus 8 ~all~~~~~~~~~~--~lG~~vv~rr~s~~~~alsH~a~~Gial~---~~l~~~~~~---ga~~~~~l~al~i~~l~~~~ 79 (260)
..+...+-.+...+ .+|.++-.|=.-|-+-+.--+=-.|.+.+ +..|+||+. -++..+.++..+..++..|.
T Consensus 4 ~~l~~aleqgLi~~~v~LGvyisFRiLnFPDLTvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~ 83 (293)
T COG4120 4 FILIGALEQGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKF 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999989999999978613554068875315751050999999998168779999999998789899999999722
Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf 650456999999999--999999996213200----133344333244228767058999989999999842-----456
Q gi|254780719|r 80 ALSSDAILGVITHST--ISLALVILSFMKWVN----TDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKI-----WKP 148 (260)
Q Consensus 80 ~~~~da~igi~~s~~--~alg~llls~~~~~~----~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~-----~r~ 148 (260)
|++. .++-.+... ++.-.-.+. -||.+ ..+.+.+.++-..-.|..-........+......++ -..
T Consensus 84 kI~~--LLAgIL~M~alySVNLrIMg-rpNl~ll~~~ti~~~l~~~~~~~~~~~pli~~vlvii~~~~v~~fl~t~~Gla 160 (293)
T COG4120 84 KILT--LLAGILTMIALYSVNLRIMG-RPNLPLLGEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRFLKTDLGLA 160 (293)
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 2877--99999999999988899855-89965368986335355456622577879999999999999999973453622
Q ss_pred HHHHCCCHHHHHHCCCCCCHHHHHHHHH----HHHHHHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHCCHHH
Q ss_conf 6541288899998089810677699999----999999999998---------89999--99999999999974199899
Q gi|254780719|r 149 LLATTVNYELAKAEGMQPEKIKLIFIMI----TSLMISVSIKFI---------GITLI--TSLLILPTVTARRFSTSPEN 213 (260)
Q Consensus 149 l~~~~fD~~~A~~~Gi~v~~~~~l~~~l----~al~v~~~v~~v---------G~llv--~allv~Paa~A~~l~~~~~~ 213 (260)
+.....+|+.++++|+|++++++.=+.+ +++.-+...|.= |++.+ -+.++. -..+.++-..
T Consensus 161 lrAtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGiG~iVvGLAavIIG----e~i~~~r~~~ 236 (293)
T COG4120 161 LRATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSMGIGTIVVGLAAVIIG----ETIFGSRRLL 236 (293)
T ss_pred EECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf 101279877999839872568999899988899985668887436530025744245456799977----9887455899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999999999999999955880899
Q gi|254780719|r 214 MAILATIIGILGIIIGLYGSLIFDTPSGPS 243 (260)
Q Consensus 214 ~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~ 243 (260)
.-+.+..+|.+.--.-..+.....++++-.
T Consensus 237 ~~lla~viGsI~Yr~~i~~~L~~Gl~~sdL 266 (293)
T COG4120 237 LALLAVVIGSILYRFAIALALSSGLDASDL 266 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 999999999999999999999859986777
No 37
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]
Probab=93.06 E-value=0.5 Score=23.70 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=82.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------CHHH--HH-HHHHHHHHHHHHH
Q ss_conf 9999999999-998788999999879996435899999--9999999950--------0366--79-9999999999986
Q gi|254780719|r 8 RALFSGIGIV-LSTGPLGCFIIWQRIAYFGDTIAHSAL--LGVALSLIFQ--------LPLT--IC-IFMIATLTSLVLL 73 (260)
Q Consensus 8 ~all~~~~~~-~~~~~lG~~vv~rr~s~~~~alsH~a~--~Gial~~~l~--------~~~~--~g-a~~~~~l~al~i~ 73 (260)
+.+..+.+.+ ...|+.=+|-+.|..-| +|..+ .|.-.++... +++. .. ++..+.+....++
T Consensus 12 nGL~~GsiyaL~AlGltlvygv~rviNf-----AHG~~~m~Gay~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~e 86 (297)
T COG0559 12 NGLSLGSIYALLALGLTLVYGVLRVINF-----AHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAITALIGLLIE 86 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999816411-----33999999999999999973233223799999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31035765045699999999999999999621----320013334433324-----422876705899998999999984
Q gi|254780719|r 74 QIQKNEALSSDAILGVITHSTISLALVILSFM----KWVNTDLTSFLFGDI-----LAVNTTDILLIWGIGFLNIMILFK 144 (260)
Q Consensus 74 ~l~~~~~~~~da~igi~~s~~~alg~llls~~----~~~~~~l~~~LfG~i-----l~v~~~dv~~~~~~~~~~~~~l~~ 144 (260)
...-|+-.++++...++.+. +...++.... ...+....+++.|+. ..+++.++..............+.
T Consensus 87 r~v~rpl~~~~~l~~liat~--G~~l~l~~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~l~~~~~s~~~~~~l~~~ 164 (297)
T COG0559 87 RLVLRPLRGRPALALLIATL--GVSLILQGLARLIFGPRPVGLPPALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLL 164 (297)
T ss_pred HHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999973288469999999--9999999999993587666677142144210320010699999999999999999999
Q ss_pred -----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----2456654128889999808981067769999999999
Q gi|254780719|r 145 -----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 145 -----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
+-|++...+-||+.|+..|+|+++.+.+-..+-+...
T Consensus 165 l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf~lg~~lA 206 (297)
T COG0559 165 LRRTRLGRALRAVAENRKMAALLGINVERVIALTFALGGALA 206 (297)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 998377188987604898998809868999999999999999
No 38
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=92.75 E-value=0.56 Score=23.45 Aligned_cols=209 Identities=16% Similarity=0.234 Sum_probs=92.3
Q ss_pred HHHHHHHHHH---HHHHHHC-----CHHHHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 5899999999---9999950-----036679999---999999998631035765045699999999999999999621-
Q gi|254780719|r 38 TIAHSALLGV---ALSLIFQ-----LPLTICIFM---IATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFM- 105 (260)
Q Consensus 38 alsH~a~~Gi---al~~~l~-----~~~~~ga~~---~~~l~al~i~~l~~~~~~~~da~igi~~s~~~alg~llls~~- 105 (260)
.++|+++.|+ +.|.+.. .++.++... .+.+.+.+..+..-| .++|-.-=+........-.+..+..
T Consensus 56 slGha~F~glGAY~~a~l~~~~~g~~~~~~~l~~~~~~~al~g~l~g~p~lR--l~g~ylaI~Tla~~~~~~~~~~~~~~ 133 (314)
T COG4177 56 SLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALR--LRGDYLAIVTLAFGEIFRILLLNATE 133 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 1477999998999999998887513428999999999999999999879999--85289999999999999999971667
Q ss_pred -CCCHHHHHH----HHHHHHHHCCHHHHHHHH-HHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf -320013334----433324422876705899-99899999998-----4245665412888999980898106776999
Q gi|254780719|r 106 -KWVNTDLTS----FLFGDILAVNTTDILLIW-GIGFLNIMILF-----KIWKPLLATTVNYELAKAEGMQPEKIKLIFI 174 (260)
Q Consensus 106 -~~~~~~l~~----~LfG~il~v~~~dv~~~~-~~~~~~~~~l~-----~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~ 174 (260)
.+.+..+.. -++|.- .++...+... ....+...... .+-|.+..+-=||+-+|+.|+|+.+++..-+
T Consensus 134 ~tgG~~Gl~~i~~~~l~g~~--~~~~~~y~~~l~~l~l~~~~~~~l~~S~~Gr~l~AiRedE~~a~alG~n~~~~Kl~aF 211 (314)
T COG4177 134 LTGGENGLSGIPRPTLLGFP--SRARGLYYLALLLLLLTLLVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAF 211 (314)
T ss_pred HHCCCCCCCCCCCHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHH
T ss_conf 51998771268833230555--3029999999999999999999986497033686661578999985998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHHH-----HHCCCC---H
Q ss_conf 9999999999999889999999-999999999741998999999999999999999----99999-----955880---8
Q gi|254780719|r 175 MITSLMISVSIKFIGITLITSL-LILPTVTARRFSTSPENMAILATIIGILGIIIG----LYGSL-----IFDTPS---G 241 (260)
Q Consensus 175 ~l~al~v~~~v~~vG~llv~al-lv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G----~~lS~-----~~~lp~---g 241 (260)
.+-+..- -..|.+...-. .+-|...- -...-..+.-.++|-.++..| -.+-. .-+..+ .
T Consensus 212 ~isa~~A----GiAGaL~a~~~~~v~p~~f~----~~~S~~~l~~vvlGG~Gt~~G~v~Ga~l~~~~~~~l~~~~~~~~~ 283 (314)
T COG4177 212 VISAAIA----GIAGALYALYLGFVSPESFS----FTLSIEVLAMVVLGGAGTLFGALLGAVLVVLLKELLRGLLPRPVE 283 (314)
T ss_pred HHHHHHH----HHHHHHHHHHHCEECCHHCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999999----99999999981503800253----999999999999847643188999999999999999762453158
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998723
Q gi|254780719|r 242 PSIIITSLFLFILSFFYK 259 (260)
Q Consensus 242 ~~Iv~~~~~~f~~~~~~~ 259 (260)
.- .++.+.++++..+++
T Consensus 284 ~~-~~v~G~llvlv~l~~ 300 (314)
T COG4177 284 YR-LLVFGLLLVLVVLFR 300 (314)
T ss_pred HH-HHHHHHHHHHHHHHC
T ss_conf 99-999999999999983
No 39
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=91.36 E-value=0.82 Score=22.52 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 424566541288899998089810677699999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
.+-|+..++.=+||-||..|+|+|+.....+...++..+
T Consensus 264 ~fGR~VyAiGGN~eAA~LSGInv~r~t~~vF~~mGvl~A 302 (394)
T COG4214 264 VFGRRVYAIGGNPEAARLSGINVERVTLLVFVIMGVLAA 302 (394)
T ss_pred EEEEEEEEECCCHHHHHHCCCCEEEHHHHHHHHHHHHHH
T ss_conf 220489872698788986487501046899999789999
No 40
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=90.75 E-value=0.95 Score=22.19 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99998788999999879996435----89999999999999500366799---999999999986310357650456999
Q gi|254780719|r 16 IVLSTGPLGCFIIWQRIAYFGDT----IAHSALLGVALSLIFQLPLTICI---FMIATLTSLVLLQIQKNEALSSDAILG 88 (260)
Q Consensus 16 ~~~~~~~lG~~vv~rr~s~~~~a----lsH~a~~Gial~~~l~~~~~~ga---~~~~~l~al~i~~l~~~~~~~~da~ig 88 (260)
.-+.++-+|-..-.|-= ...-+ +--+++.|....+. ..+|++|- ...+.+.+++-.++..+-+.++ -..|
T Consensus 19 tPLllaaLG~l~sERsG-VlNIglEG~M~~gAf~~~~~~~~-t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nq-iisG 95 (304)
T COG1079 19 TPLLLAALGGLFSERSG-VLNIGLEGIMLLGAFSGALFAYG-TGSPWLGLLAAALVGALFGLLHAFLTIKLRANQ-IISG 95 (304)
T ss_pred HHHHHHHHHHHHHHHHC-EEEECHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHH
T ss_conf 99999999888988722-14541314899999999999981-466899999999999999999999997614561-2248
Q ss_pred HHHHH-HHHHHHHHHH-HCCCCHHHHHHH---------HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q ss_conf 99999-9999999996-213200133344---------33324422876705899998999999984245-----66541
Q gi|254780719|r 89 VITHS-TISLALVILS-FMKWVNTDLTSF---------LFGDILAVNTTDILLIWGIGFLNIMILFKIWK-----PLLAT 152 (260)
Q Consensus 89 i~~s~-~~alg~llls-~~~~~~~~l~~~---------LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r-----~l~~~ 152 (260)
+.... ..++...+.+ ..+....+++.. ..|+...-. | +.............+..|| ++...
T Consensus 96 ~alnl~a~Glt~fl~~~~~~~~~~~~~~~~~p~l~~ip~~g~~~~~~--~-~~~y~ai~lv~~~~~~L~rTr~GL~lrav 172 (304)
T COG1079 96 LALNLLASGLTAFLGQSIFGQPGTTFQPIDIPGLSDIPVIGPALFGQ--S-PLVYLAILLVALVWYVLYRTRFGLRLRAV 172 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCC--C-HHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999998999999999863688877766776323476444110255--7-99999999999999997305246699982
Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2888999980898106776999999999999999988999999
Q gi|254780719|r 153 TVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITS 195 (260)
Q Consensus 153 ~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~a 195 (260)
.=||+-++..|+||.++|+.=..+-+..- -.-|..+..+
T Consensus 173 GE~P~aad~~Gi~V~r~R~~av~~sG~la----GlaGa~Lsl~ 211 (304)
T COG1079 173 GENPAAADAMGINVYRYRYLAVLVSGALA----GLAGAYLSLA 211 (304)
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHHEEEE
T ss_conf 69826788679875678899999999998----7535213555
No 41
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.69 E-value=5.2 Score=18.16 Aligned_cols=195 Identities=10% Similarity=0.067 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHH---HCCCCHHHHHHHHHHHHHHCCH---H--HH-H
Q ss_conf 999999999999863103576504569999999999-99999996---2132001333443332442287---6--70-5
Q gi|254780719|r 60 CIFMIATLTSLVLLQIQKNEALSSDAILGVITHSTI-SLALVILS---FMKWVNTDLTSFLFGDILAVNT---T--DI-L 129 (260)
Q Consensus 60 ga~~~~~l~al~i~~l~~~~~~~~da~igi~~s~~~-alg~llls---~~~~~~~~l~~~LfG~il~v~~---~--dv-~ 129 (260)
.+..++.+-+.+..+++.+.+.+| ....+++.--. -+...++. +.|+....-++--+.|-...++ + ++ +
T Consensus 121 ~g~~~G~~wa~ipg~Lka~f~~nE-VIttiMlNyIa~~l~~~lV~~~~~~p~~~~~~~T~~i~~~a~lp~~~~~~~~~~~ 199 (356)
T COG4603 121 AGAAGGGLWALIPGLLKARFGVNE-VITTIMLNYIAVYLLNYLVEGPLRDPAGTNFPQTRPIPDAARLPSLFLASGRLHW 199 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHH
T ss_conf 999999999999999999918629-9999999999999999998072458876788668257511137755421112899
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--
Q ss_conf 899998999999984-----2456654128889999808981067769999999999--9999998899999999999--
Q gi|254780719|r 130 LIWGIGFLNIMILFK-----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI--SVSIKFIGITLITSLLILP-- 200 (260)
Q Consensus 130 ~~~~~~~~~~~~l~~-----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v--~~~v~~vG~llv~allv~P-- 200 (260)
-..+.....+...++ +--|+.....+|+.||..|+++++....-+.+-+..- +..+...|..--..--..|
T Consensus 200 g~lial~~av~~~~ll~kT~~G~~lr~~G~sp~Aa~yaGi~~~r~i~~sm~iSGalAGLaG~~ev~G~~~~~~~~~~~G~ 279 (356)
T COG4603 200 GFLLALAAAVLVWFLLKKTVFGYELRVVGLSPRAARYAGISVKRTIFLSMLISGALAGLAGAVEVLGAFGRLRPSISPGY 279 (356)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCC
T ss_conf 99999999999999999814775888724880389987987468999999999999999889998152010003667776
Q ss_pred ---HHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---9999974199899-9999999999999999999999558808999999999999998
Q gi|254780719|r 201 ---TVTARRFSTSPEN-MAILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLFILSF 256 (260)
Q Consensus 201 ---aa~A~~l~~~~~~-~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~ 256 (260)
+.+.-.++|+... .++.|.+++.+ ...|-......+.|..-..++....++.+..
T Consensus 280 Gf~gI~Vallg~~~P~giv~asll~~~l-~~G~~~~~~~~g~P~~lv~v~qg~ii~~~~~ 338 (356)
T COG4603 280 GFDGIAVALLGRNNPLGIVFASLLFGFL-YIGAEAAQLNLGVPKELVLVFQGLIILFLLA 338 (356)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7289999998068837899999999999-9868987640499989999999999999999
No 42
>TIGR00907 2A0304 amino acid permease; InterPro: IPR004756 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=59.76 E-value=11 Score=16.43 Aligned_cols=98 Identities=8% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCHHHH--------HHC---CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q ss_conf 245665412888999--------980---8981--067769999999999999999889999999------999999999
Q gi|254780719|r 145 IWKPLLATTVNYELA--------KAE---GMQP--EKIKLIFIMITSLMISVSIKFIGITLITSL------LILPTVTAR 205 (260)
Q Consensus 145 ~~r~l~~~~fD~~~A--------~~~---Gi~v--~~~~~l~~~l~al~v~~~v~~vG~llv~al------lv~Paa~A~ 205 (260)
..+.=..-+|.+|.+ |.. ++|. -+++..+.+++++.-=.|..+.+.+...+- =++|-++..
T Consensus 336 t~~sR~~~AFsRD~~LP~S~~W~~vn~~~~vPlnAvwl~~~~~i~~~L~~LgSs~Af~A~~s~c~~~L~~sY~IPIi~~~ 415 (494)
T TIGR00907 336 TANSRMIYAFSRDGGLPFSRLWSKVNPRTQVPLNAVWLSAVLVIVIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKL 415 (494)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47689988876437777563205434767862899999999999998667789999999999999999987688999997
Q ss_pred HHHCC--HHHH----HHHHHHHHHHHHH----HHHHHHHHHCCCCHH
Q ss_conf 74199--8999----9999999999999----999999995588089
Q gi|254780719|r 206 RFSTS--PENM----AILATIIGILGII----IGLYGSLIFDTPSGP 242 (260)
Q Consensus 206 ~l~~~--~~~~----~~~s~~~g~~~~~----~G~~lS~~~~lp~g~ 242 (260)
...|+ +++- --.+...+..... ...+.++....|..|
T Consensus 416 ~~gR~l~~~~GP~~lGk~g~~VN~~Av~W~~f~~VlF~fP~~~PVT~ 462 (494)
T TIGR00907 416 VLGRNLIIEPGPFLLGKYGFFVNAVAVAWTVFISVLFLFPPVLPVTP 462 (494)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 63214423489876415778999999999999876642678899887
No 43
>pfam01790 LGT Prolipoprotein diacylglyceryl transferase.
Probab=52.91 E-value=14 Score=15.78 Aligned_cols=38 Identities=13% Similarity=-0.160 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998788999999879996435899999
Q gi|254780719|r 7 IRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSAL 44 (260)
Q Consensus 7 ~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~ 44 (260)
.+..=....+++..+..=..-..||.-.-.|-+...++
T Consensus 14 i~~Ygl~~~lg~l~~~~~~~~~~~r~g~~~~~~~~l~~ 51 (257)
T pfam01790 14 IRWYGLMYAIGILLAYWLARKRAKKRGINKDQLDDLLL 51 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999999999999999999999876989899999999
No 44
>pfam01566 Nramp Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the inte
Probab=38.92 E-value=24 Score=14.54 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=22.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999999950036679999999999998631035765045699
Q gi|254780719|r 46 GVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEALSSDAIL 87 (260)
Q Consensus 46 Gial~~~l~~~~~~ga~~~~~l~al~i~~l~~~~~~~~da~i 87 (260)
+.++..+++.|..++...++.....+....+++.| .-|..+
T Consensus 80 a~~l~ll~gi~~~~~~~i~~~~~~~il~~~~~~y~-~~E~~~ 120 (365)
T pfam01566 80 AIALNLLFGIPLYIGVVITAVLVLLLLFLQRGGYR-RLERVI 120 (365)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHH
T ss_conf 99999985997689999999999999999817707-899999
No 45
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=37.96 E-value=20 Score=14.91 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=77.4
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 06-98999999999999987889999998799964358999999999999-950036-----679999999999998631
Q gi|254780719|r 3 NE-FFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSL-IFQLPL-----TICIFMIATLTSLVLLQI 75 (260)
Q Consensus 3 ~~-f~~~all~~~~~~~~~~~lG~~vv~rr~s~~~~alsH~a~~Gial~~-~l~~~~-----~~ga~~~~~l~al~i~~l 75 (260)
|| |+.|++++|.++|...|=+-+=+ ..|..+-+ .+||-+ ..-....+++++.++..
T Consensus 26 de~q~hRPliaCTL~G~iLGDlkTG~----------------i~GGtlEL~alGwmn~G~a~~Pd~alAs~isTilvi~- 88 (271)
T TIGR00822 26 DEFQLHRPLIACTLVGLILGDLKTGI----------------ILGGTLELIALGWMNVGAAQAPDPALASIISTILVIS- 88 (271)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-
T ss_conf 63566450687789988885467777----------------8757999999612245755886278999999998884-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03576504569999999999999999962132----00133344-33324422876705899998999999984245665
Q gi|254780719|r 76 QKNEALSSDAILGVITHSTISLALVILSFMKW----VNTDLTSF-LFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLL 150 (260)
Q Consensus 76 ~~~~~~~~da~igi~~s~~~alg~llls~~~~----~~~~l~~~-LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~ 150 (260)
. +.+-...+++-..... +|..+.=+.+. ..+..+++ =-||+-++++=++--+.+.+.-..+.-+.. =+
T Consensus 89 ~---~q~i~~gIalalPlaa-agQ~lt~f~rtitv~F~h~ADk~A~~a~~~ai~~lh~t~l~~qA~rvaipAl~v---~l 161 (271)
T TIGR00822 89 G---HQSIGTGIALALPLAA-AGQVLTIFVRTITVLFQHAADKAAKEANLAAISLLHVTALLIQALRVAIPALIV---AL 161 (271)
T ss_pred C---CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf 4---6407889999999999-879999999999999999998855430536788999999999999999999999---99
Q ss_pred HHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 4128889999808981067769999999999999999889999-99999999999974199899999999999999
Q gi|254780719|r 151 ATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLI-TSLLILPTVTARRFSTSPENMAILATIIGILG 225 (260)
Q Consensus 151 ~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv-~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~ 225 (260)
.++-|+-.+-..-+|- .++-+.++.|.+++ +++=.. ...+..+-+.+++....+++...
T Consensus 162 ~~~~~~vqa~l~AiP~-------------~~T~Gl~iAGGiivvVGyamv---lrmM~~~yl~Pff~~GFL~~~y~ 221 (271)
T TIGR00822 162 FVSQSAVQALLKAIPE-------------VVTKGLQIAGGIIVVVGYAMV---LRMMFVAYLMPFFYLGFLLAAYT 221 (271)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHCCCCCCCCHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9889999999852188-------------871641005732026879999---99731012238999999999999
No 46
>PRK00701 manganese transport protein MntH; Reviewed
Probab=37.77 E-value=25 Score=14.43 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=26.2
Q ss_pred HHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHH
Q ss_conf 9999999--995003667999999999999863103576504569-99999999999
Q gi|254780719|r 44 LLGVALS--LIFQLPLTICIFMIATLTSLVLLQIQKNEALSSDAI-LGVITHSTISL 97 (260)
Q Consensus 44 ~~Gial~--~~l~~~~~~ga~~~~~l~al~i~~l~~~~~~~~da~-igi~~s~~~al 97 (260)
..|.++| .++|.|..++....+... +.+.++.+++..+-|.. .+.+.....+.
T Consensus 128 ~~G~a~al~llfGip~~~~~~i~~~~~-~~il~~~~~~~~~~E~~~~~lv~~m~l~F 183 (438)
T PRK00701 128 VIGAAIALKLLFGIPLLWGALITALDT-FLILMLQRRGFRPLEAIVGGLLLVIAACF 183 (438)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 986999999996885799999999999-99999983685359999999999999999
No 47
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=31.19 E-value=32 Score=13.82 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHH
Q ss_conf 999998424566541288899998089810677
Q gi|254780719|r 138 NIMILFKIWKPLLATTVNYELAKAEGMQPEKIK 170 (260)
Q Consensus 138 ~~~~l~~~~r~l~~~~fD~~~A~~~Gi~v~~~~ 170 (260)
+++++++-.|++ ||.||+.|...|.++
T Consensus 13 vvvllLFGaKKL------PdlARslGks~RifK 39 (107)
T PRK00191 13 LLIIVLFGAKKL------PDAARSIGRSMRIFK 39 (107)
T ss_pred HHHHHHHCCCCC------HHHHHHHHHHHHHHH
T ss_conf 999999765303------699998858999999
No 48
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI; InterPro: IPR014227 This entry contains the sporulation protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E . Second, mutation leads to a sporulation defect. Third, it is found in exactly those genomes whose bacteria are capable of sporulation, except that it is absent in Clostridium acetobutylicum ATCC 824. YtvI has extensive hydrophobic regions and is likely to be an integral membrane protein..
Probab=22.49 E-value=47 Score=12.92 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHCCH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999995003---66799999999999986310357650456999999999999999996
Q gi|254780719|r 48 ALSLIFQLP---LTICIFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILS 103 (260)
Q Consensus 48 al~~~l~~~---~~~ga~~~~~l~al~i~~l~~~~~~~~da~igi~~s~~~alg~llls 103 (260)
.+......| |.+-|+.+|.+.-=.+.++.||.+.++.-+..+++..++..-..+++
T Consensus 13 ~~~~~~~~p~~~Pf~~Al~~A~~l~P~V~~L~~k~~~pR~lav~i~l~~f~~~~~~~l~ 71 (350)
T TIGR02872 13 VLAIYFILPYSLPFVIALILALILEPAVRFLEKKLKLPRALAVLIVLLIFLGIIGGLLY 71 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999704478999862588507899999999999999999
No 49
>pfam05805 L6_membrane L6 membrane protein. This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family. Several members of this family have been implicated in human cancer.
Probab=21.88 E-value=49 Score=12.85 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 6435899999999999995
Q gi|254780719|r 35 FGDTIAHSALLGVALSLIF 53 (260)
Q Consensus 35 ~~~alsH~a~~Gial~~~l 53 (260)
.|..+---++..++.-+++
T Consensus 10 lG~sL~pLal~~i~aNilL 28 (195)
T pfam05805 10 LGLSLIPLALFCIVANILL 28 (195)
T ss_pred HHHHHHHHHHHHHHHHHHE
T ss_conf 6057999999999998881
No 50
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; InterPro: IPR010966 This entry represents the NqrB subunit of the six-protein (NqrA to NqrF), membrane-associated Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria . The Nqr complex catalyses the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of sodium ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. Both the NqrB and NqrC subunits contain a FMN cofactor that is covalently attached by a phosphate group to a threonine residue .; GO: 0010181 FMN binding, 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.82 E-value=49 Score=12.84 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHHHHHHHH
Q ss_conf 43589999999999999500-------366799999999999986310357650456999-----999999999999996
Q gi|254780719|r 36 GDTIAHSALLGVALSLIFQL-------PLTICIFMIATLTSLVLLQIQKNEALSSDAILG-----VITHSTISLALVILS 103 (260)
Q Consensus 36 ~~alsH~a~~Gial~~~l~~-------~~~~ga~~~~~l~al~i~~l~~~~~~~~da~ig-----i~~s~~~alg~llls 103 (260)
||.-.=+.+.|.++=++-++ +..+|+...+.++-.+......+++-..++... =+..+++|.|++++.
T Consensus 365 GEtSTlA~liGa~~l~~t~IASWri~a~~~~G~~~~~~lFn~Is~l~~Gq~G~~~~a~f~~p~~~hlv~GGfAfGlvFMA 444 (508)
T TIGR01937 365 GETSTLAILIGAALLILTGIASWRIMAGVMIGMIAMSTLFNAISVLIVGQSGSEANAMFFIPWYWHLVLGGFAFGLVFMA 444 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 25899999998999999858889999999999999999998987765067887787434472789998604787467650
Q ss_pred HCCCC--HHHHHHHHHHHHHHCC
Q ss_conf 21320--0133344333244228
Q gi|254780719|r 104 FMKWV--NTDLTSFLFGDILAVN 124 (260)
Q Consensus 104 ~~~~~--~~~l~~~LfG~il~v~ 124 (260)
..|=+ ..+.-+|+||-..++-
T Consensus 445 TDPVss~~t~~GKW~yG~liG~m 467 (508)
T TIGR01937 445 TDPVSSSFTKKGKWIYGALIGVM 467 (508)
T ss_pred CCCCCCCHHCCCCHHHHHHHHHH
T ss_conf 68776000203205778999999
Done!