HHsearch alignment for GI: 254780719 and conserved domain: pfam02653
>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=96.94 E-value=0.021 Score=31.28 Aligned_cols=144 Identities=9% Similarity=0.103 Sum_probs=69.4
Q ss_pred HHHHHHHHHHH--HHHH----HCCHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf 58999999999--9999----5003667---9999999999998631035765045699999999999999999621---
Q gi|254780719|r 38 TIAHSALLGVA--LSLI----FQLPLTI---CIFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFM--- 105 (260)
Q Consensus 38 alsH~a~~Gia--l~~~----l~~~~~~---ga~~~~~l~al~i~~l~~~~~~~~da~igi~~s~~~alg~llls~~--- 105 (260)
T Consensus 29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~--~~~tl~~~~~~~~~~~~~~~~~~ 106 (267)
T pfam02653 29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPE--VIVTLLLNFILRGLTLFLLTGIL 106 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5799999999999999999980530899999999999999997458676521429--99999999999999999986355
Q ss_pred CC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 32--001333443332442287670589999899999998-----42456654128889999808981067769999999
Q gi|254780719|r 106 KW--VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILF-----KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITS 178 (260)
Q Consensus 106 ~~--~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~-----~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~a 178 (260)
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~ 186 (267)
T pfam02653 107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG 186 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78877555532554200211257999999999999999999995888469999966599998869988999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780719|r 179 LMISV 183 (260)
Q Consensus 179 l~v~~ 183 (260)
T Consensus 187 ~lagl 191 (267)
T pfam02653 187 ALAGL 191 (267)
T ss_pred HHHHH
T ss_conf 99999