Query gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 260
No_of_seqs 123 out of 2499
Neff 7.3
Searched_HMMs 13730
Date Wed Jun 1 08:08:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780719.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 99.9 2.4E-21 1.7E-25 132.2 21.2 247 10-259 60-323 (324)
2 d1td4a_ b.85.2.1 (A:) Head dec 9.8 3.7 0.00027 16.4 -4.6 15 30-44 88-102 (103)
3 d1tbaa_ a.15.1.1 (A:) TAF(II)2 8.8 33 0.0024 11.3 -0.1 14 109-122 7-20 (67)
4 d1q1ha_ a.4.5.41 (A:) Transcri 6.4 53 0.0039 10.2 1.8 25 153-177 34-58 (88)
5 d1vega_ a.5.2.1 (A:) NEDD8 ult 5.6 61 0.0045 9.8 1.9 17 146-162 33-49 (83)
6 d1xp8a1 c.37.1.11 (A:15-282) R 4.2 89 0.0065 8.9 1.8 16 153-168 96-111 (268)
7 d1oede_ f.36.1.1 (E:) Acetylch 3.9 96 0.007 8.7 2.7 33 208-240 226-258 (260)
8 d2c2ia1 d.38.1.4 (A:2-150) Hyp 3.5 1.1E+02 0.0081 8.4 1.8 46 121-177 23-68 (149)
9 d1oedc_ f.36.1.1 (C:) Acetylch 3.4 1.1E+02 0.0082 8.4 3.5 33 208-240 226-258 (260)
10 d1s9ca1 d.38.1.4 (A:164-289) 2 3.2 1.2E+02 0.0087 8.2 2.9 29 147-175 29-57 (126)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=2.4e-21 Score=132.24 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998788999----999879996435899999999999995003------66799999999999986310357
Q gi|254780719|r 10 LFSGIGIVLSTGPLGCF----IIWQRIAYFGDTIAHSALLGVALSLIFQLP------LTICIFMIATLTSLVLLQIQKNE 79 (260)
Q Consensus 10 ll~~~~~~~~~~~lG~~----vv~rr~s~~~~alsH~a~~Gial~~~l~~~------~~~ga~~~~~l~al~i~~l~~~~ 79 (260)
.+++.+.|...+.-|.. ...+=.+----+++..+-.|++++.+++.+ ....++..+...........|+.
T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (324)
T d1l7va_ 60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH 139 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999817988783678754288999999997233225788999999999999999999986146
Q ss_pred CCHH-HHHHHHHHHHHHHHHH-HHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 6504-5699999999999999-999621-320013334433324422876705899998999999984245665412888
Q gi|254780719|r 80 ALSS-DAILGVITHSTISLAL-VILSFM-KWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNY 156 (260)
Q Consensus 80 ~~~~-da~igi~~s~~~alg~-llls~~-~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~ 156 (260)
..+. -...|+..+..++... .+.... ++...+...|+.|+....+|+|++.......+. .......|++...+.||
T Consensus 140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~lgd 218 (324)
T d1l7va_ 140 LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVL-LWICCQSRPMNMLALGE 218 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHH-HHHHHCHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH
T ss_conf 88136778899999999999999999547999999999976500445320357788751899-99999984466553036
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999808981067769999999999999999889999999999999999741998999999999999999999999999-
Q gi|254780719|r 157 ELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLI- 235 (260)
Q Consensus 157 ~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~- 235 (260)
|.|++.|+|+++++...+.+.++.++.++..+|.+.+.+ ++.|+.+.+...+++|+.++.|.++|.........++..
T Consensus 219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvG-Li~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~r~i 297 (324)
T d1l7va_ 219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIG-LVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLA 297 (324)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSS-SHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888706866677779999999999999997236445558-7579999986077751799999999999999999999760
Q ss_pred ---HCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf ---558808999999999999998723
Q gi|254780719|r 236 ---FDTPSGPSIIITSLFLFILSFFYK 259 (260)
Q Consensus 236 ---~~lp~g~~Iv~~~~~~f~~~~~~~ 259 (260)
.|+|.|-.+.++.+. |++.++.|
T Consensus 298 ~~p~eiPvGvitaliG~P-~fi~Ll~r 323 (324)
T d1l7va_ 298 LAAAELPIGVVTATLGAP-VFIWLLLK 323 (324)
T ss_dssp CSSSCCCHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf 466563299999999999-99999983
No 2
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Probab=9.81 E-value=3.7 Score=16.44 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 879996435899999
Q gi|254780719|r 30 QRIAYFGDTIAHSAL 44 (260)
Q Consensus 30 rr~s~~~~alsH~a~ 44 (260)
|+-+|.|-++||+++
T Consensus 88 K~~AFaGs~iSh~~~ 102 (103)
T d1td4a_ 88 KANAFAGSALSHAAL 102 (103)
T ss_dssp HHTTTTTSEEEEECC
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 766651684321348
No 3
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.79 E-value=33 Score=11.31 Aligned_cols=14 Identities=50% Similarity=0.776 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 01333443332442
Q gi|254780719|r 109 NTDLTSFLFGDILA 122 (260)
Q Consensus 109 ~~~l~~~LfG~il~ 122 (260)
..++..+|||||-.
T Consensus 7 ~~~LtGfLFGNId~ 20 (67)
T d1tbaa_ 7 GLDLTGILFGNIDS 20 (67)
T ss_dssp SCCCTTHHHHCEET
T ss_pred CCCEEEEEECCCCC
T ss_conf 71101224414277
No 4
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.43 E-value=53 Score=10.16 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2888999980898106776999999
Q gi|254780719|r 153 TVNYELAKAEGMQPEKIKLIFIMIT 177 (260)
Q Consensus 153 ~fD~~~A~~~Gi~v~~~~~l~~~l~ 177 (260)
.-|++.|+..|++.+..+-.++.+-
T Consensus 34 vtDe~iA~~tgi~in~VRk~Ly~L~ 58 (88)
T d1q1ha_ 34 MTDEEIANQLNIKVNDVRKKLNLLE 58 (88)
T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7899999996996999999999998
No 5
>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.58 E-value=61 Score=9.81 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=12.5
Q ss_pred HHHHHHHCCCHHHHHHC
Q ss_conf 45665412888999980
Q gi|254780719|r 146 WKPLLATTVNYELAKAE 162 (260)
Q Consensus 146 ~r~l~~~~fD~~~A~~~ 162 (260)
-.+++++.||+|.|+..
T Consensus 33 idqLvYMGF~~~~Ae~A 49 (83)
T d1vega_ 33 INQLVYMGFDTVVAEAA 49 (83)
T ss_dssp HHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH
T ss_conf 99999834238889999
No 6
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.15 E-value=89 Score=8.93 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=11.5
Q ss_pred CCCHHHHHHCCCCCCH
Q ss_conf 2888999980898106
Q gi|254780719|r 153 TVNYELAKAEGMQPEK 168 (260)
Q Consensus 153 ~fD~~~A~~~Gi~v~~ 168 (260)
+|||++|+..|+++..
T Consensus 96 ~~~~~~a~~~Gvd~d~ 111 (268)
T d1xp8a1 96 ALDPVYARALGVNTDE 111 (268)
T ss_dssp CCCHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHCCCCHH
T ss_conf 5899999982898123
No 7
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.91 E-value=96 Score=8.75 Aligned_cols=33 Identities=3% Similarity=0.006 Sum_probs=22.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 199899999999999999999999999955880
Q gi|254780719|r 208 STSPENMAILATIIGILGIIIGLYGSLIFDTPS 240 (260)
Q Consensus 208 ~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~ 240 (260)
++...+...+-..+..+.+..+++++.++|-||
T Consensus 226 A~viDR~~l~vF~~~~~i~t~~i~l~~~~~~~p 258 (260)
T d1oede_ 226 GKVIDKACFWIALLLFSIGTLAIFLTGHFNQVP 258 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999999999935248998
No 8
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.46 E-value=1.1e+02 Score=8.39 Aligned_cols=46 Identities=11% Similarity=-0.007 Sum_probs=29.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 422876705899998999999984245665412888999980898106776999999
Q gi|254780719|r 121 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMIT 177 (260)
Q Consensus 121 l~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~ 177 (260)
..+|.+|+..-+ -...-++|+ -.|+|+|+..|.+-...+-.+...+
T Consensus 23 ~tVt~~~i~~Fa--------~~tgD~nPi---H~D~~~A~~~~~~~~i~~g~~~~~l 68 (149)
T d2c2ia1 23 VTITQEEVNLFA--------DATGDHQWI---HVDPERAAAGPFGTTIAHGFMTLAL 68 (149)
T ss_dssp EECCHHHHHHHH--------HHHSCCCHH---HHCHHHHHTSTTSSCBCCHHHHHHT
T ss_pred EEECHHHHHHHH--------HHHCCCCCE---EECCHHHCCCCCCCCEECCHHHHHH
T ss_conf 998899999999--------987899960---8280574225768501012223434
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.42 E-value=1.1e+02 Score=8.36 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=17.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 199899999999999999999999999955880
Q gi|254780719|r 208 STSPENMAILATIIGILGIIIGLYGSLIFDTPS 240 (260)
Q Consensus 208 ~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~ 240 (260)
++-..+++++-..+..+.+..++++-..+|-||
T Consensus 226 A~ViDRlfl~lF~i~~vi~ti~ifl~~~~~~~p 258 (260)
T d1oedc_ 226 GQTIDRLSMFIITPVMVLGTIFIFVMGNFNHPP 258 (260)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999999998611237999
No 10
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.2e+02 Score=8.21 Aligned_cols=29 Identities=7% Similarity=0.088 Sum_probs=20.7
Q ss_pred HHHHHHCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 56654128889999808981067769999
Q gi|254780719|r 147 KPLLATTVNYELAKAEGMQPEKIKLIFIM 175 (260)
Q Consensus 147 r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~ 175 (260)
.+.+-+-.|+|+|+..|.+-+..+-.+..
T Consensus 29 GD~NPIH~D~~~Ak~~g~~~~IahG~l~~ 57 (126)
T d1s9ca1 29 GDWNPLHIDPNFASLAGFDKPILHGLCTF 57 (126)
T ss_dssp SCCCGGGTCHHHHHTTTCSSCCCCHHHHH
T ss_pred CCCCEEEECHHHHHHCCCCCCCCHHHHHH
T ss_conf 99942682778973458887310178999
Done!