RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter,
permease protein [Candidatus Liberibacter asiaticus str. psy62]
         (260 letters)



>gnl|CDD|181938 PRK09543, znuB, high-affinity zinc transporter membrane component;
           Reviewed.
          Length = 261

 Score =  202 bits (517), Expect = 5e-53
 Identities = 103/256 (40%), Positives = 171/256 (66%)

Query: 4   EFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFM 63
           E  +    +GI +  + GPLG F++W+R++YFGDT+AH++LLGVA  L+  +     +  
Sbjct: 3   ELLLPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIA 62

Query: 64  IATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAV 123
           +  L +  L+ ++K   L+ D +LG++ HS +SL LV++S M  V  DL ++LFGD+LAV
Sbjct: 63  VTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNVRVDLMAYLFGDLLAV 122

Query: 124 NTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISV 183
              D++ I     + + ILF  W+ LL+ T++ +LA  +G++ +++KL+ +++T+L I V
Sbjct: 123 TPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGV 182

Query: 184 SIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPS 243
           ++KF+G  +ITSLLI+P  TARRF+ +PE MA +A ++G+L +  GL  S  +DTP+GPS
Sbjct: 183 AMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMLAVTGGLTFSAFYDTPAGPS 242

Query: 244 IIITSLFLFILSFFYK 259
           +++ +  LFILS   K
Sbjct: 243 VVLCAALLFILSMMKK 258


>gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter,
           permease subunit.  This protein family is the permease
           subunit of binding protein-dependent ABC transporter
           complex that strictly co-occurs with TIGR03769. TIGRFAMs
           model TIGR03769 describes a protein domain that occurs
           singly or as one of up to three repeats in proteins of a
           number of Actinobacteria, including Propionibacterium
           acnes KPA171202. The TIGR03769 domain occurs both in the
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           permease subunits outside the scope of this family
           include manganese transporter MntB in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 270

 Score =  107 bits (269), Expect = 3e-24
 Identities = 69/253 (27%), Positives = 136/253 (53%)

Query: 5   FFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMI 64
           F  +AL   +   +  G +G  ++ + +A+ GD +AH+   G+A++   Q  L +   + 
Sbjct: 16  FLPKALLVAVLSSIVCGVVGTHVVLRGMAFIGDAVAHAVFPGLAVAFALQGSLLLGGAVA 75

Query: 65  ATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVN 124
              T++++    +N  L  D+I+G+   +  +L LVI+S +      L  FLFG I  + 
Sbjct: 76  GVATAILIAVFSQNRRLKEDSIIGIFFVAAFALGLVIISRVPGYTGSLQQFLFGSITGIP 135

Query: 125 TTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVS 184
            +DI++   +G + ++ +  + K L+A +++ E A+A G+    + L+  ++ +  + +S
Sbjct: 136 DSDIVVAAVVGAVVLLAVAALHKELVAVSLDRETARAMGLPVFLLDLVLYVLVTAAVVIS 195

Query: 185 IKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSI 244
           ++ IG  L+ +LLI P  TAR  +     M  L+ +IG +G  +GLY S   D P+G +I
Sbjct: 196 VQTIGNILVLALLITPAATARLLTDRLGVMMALSPVIGGVGSFLGLYLSWSIDVPTGGTI 255

Query: 245 IITSLFLFILSFF 257
           ++    +F+ S+F
Sbjct: 256 VLVLTAVFLASWF 268


>gnl|CDD|178754 PLN03215, PLN03215, ascorbic acid mannose pathway regulator 1;
           Provisional.
          Length = 373

 Score = 26.8 bits (59), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 89  VITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTD 127
           +I H   + AL  +  + W+N+DL    FG  L  N TD
Sbjct: 205 IIVHKGQTYALDSIGIVYWINSDLEFSRFGTSLDENITD 243


>gnl|CDD|178734 PLN03192, PLN03192, Voltage-dependent potassium channel;
           Provisional.
          Length = 823

 Score = 26.8 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 96  SLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLI 131
           SL +  +S + W  T +T+  +GD+ AVNT +++ I
Sbjct: 246 SLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFI 281


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.145    0.424 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,205,765
Number of extensions: 276701
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 147
Length of query: 260
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 169
Effective length of database: 4,028,145
Effective search space: 680756505
Effective search space used: 680756505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.5 bits)