RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter,
permease protein [Candidatus Liberibacter asiaticus str. psy62]
         (260 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.3 bits (81), Expect = 0.015
 Identities = 56/339 (16%), Positives = 99/339 (29%), Gaps = 147/339 (43%)

Query: 3   NEFFIRALFSGIG----------------------IVLSTGPLGCFIIWQRIA------- 33
               + A+F G G                      ++  +           +        
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAE 206

Query: 34  -YFG---DTIA--HSA--------LLGVALSLIFQLPLTICIFMIA--TLTSLVL----L 73
             F    + +    +         LL + +S     PL I +  +A   +T+ +L     
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPIS----CPL-IGVIQLAHYVVTAKLLGFTPG 261

Query: 74  QIQKNEALSSDAILGVITHST-ISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIW 132
           +++    L      G   HS  +  A+ I     W      SF      A+     +L +
Sbjct: 262 ELR--SYLK-----GATGHSQGLVTAVAIAETDSW-----ESFFVSVRKAIT----VLFF 305

Query: 133 GIG------FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVS-- 184
            IG      + N  +      P   + +   L   EG  P           S M+S+S  
Sbjct: 306 -IGVRCYEAYPNTSL------P--PSILEDSLENNEG-VP-----------SPMLSISNL 344

Query: 185 -----IKFIGITLITSLLILPTVTARRFSTS----PENMAILATIIGILGIIIGLYGSLI 235
                  ++  T   S   LP    ++   S     +N+ +++      G    LYG   
Sbjct: 345 TQEQVQDYVNKT--NS--HLP--AGKQVEISLVNGAKNL-VVS------GPPQSLYG--- 388

Query: 236 FDT-------PSGP--SII--------ITSLFLFILSFF 257
            +        PSG   S I         ++ FL + S F
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427



 Score = 29.9 bits (67), Expect = 0.63
 Identities = 34/278 (12%), Positives = 69/278 (24%), Gaps = 123/278 (44%)

Query: 7   IRALFSGI-----GIVLSTGPLGCFII-----WQRIAYFGDTIAHSALLGVALSLIFQL- 55
           +R+   G      G+V +        I     W       ++   S     A++++F + 
Sbjct: 263 LRSYLKGATGHSQGLVTAV------AIAETDSW-------ESFFVSVRK--AITVLFFIG 307

Query: 56  -------PLTICIFMIATLTSLVLLQ--IQKNEA----------LSSDAILGVITH---- 92
                  P T       +L   +L +  ++ NE           L+ + +   +      
Sbjct: 308 VRCYEAYPNT-------SLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359

Query: 93  ----STISLALVILSFMKWVNTDLTSF--------LFG------DILAVNTTDILLIWGI 134
                 + ++L        VN    +         L+G         A +  D       
Sbjct: 360 LPAGKQVEISL--------VNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSGLD------- 403

Query: 135 GFLNIMILFKIWKP-----LLATTVNYE---LAKAEGMQPEKIKLIFIMITSLMISVSIK 186
                 I F   K       L     +    L  A     + I               + 
Sbjct: 404 ---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS----DLIN------------KDLV 444

Query: 187 FIGITLITSLLILP---TVTARRFSTSPENMAILATII 221
              ++     + +P   T           +  I   I+
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERIV 480


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.145    0.424 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,095,786
Number of extensions: 88859
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 21
Length of query: 260
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 170
Effective length of database: 3,511,270
Effective search space: 596915900
Effective search space used: 596915900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.0 bits)