RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] (260 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.3 bits (81), Expect = 0.015 Identities = 56/339 (16%), Positives = 99/339 (29%), Gaps = 147/339 (43%) Query: 3 NEFFIRALFSGIG----------------------IVLSTGPLGCFIIWQRIA------- 33 + A+F G G ++ + + Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAE 206 Query: 34 -YFG---DTIA--HSA--------LLGVALSLIFQLPLTICIFMIA--TLTSLVL----L 73 F + + + LL + +S PL I + +A +T+ +L Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPIS----CPL-IGVIQLAHYVVTAKLLGFTPG 261 Query: 74 QIQKNEALSSDAILGVITHST-ISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIW 132 +++ L G HS + A+ I W SF A+ +L + Sbjct: 262 ELR--SYLK-----GATGHSQGLVTAVAIAETDSW-----ESFFVSVRKAIT----VLFF 305 Query: 133 GIG------FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVS-- 184 IG + N + P + + L EG P S M+S+S Sbjct: 306 -IGVRCYEAYPNTSL------P--PSILEDSLENNEG-VP-----------SPMLSISNL 344 Query: 185 -----IKFIGITLITSLLILPTVTARRFSTS----PENMAILATIIGILGIIIGLYGSLI 235 ++ T S LP ++ S +N+ +++ G LYG Sbjct: 345 TQEQVQDYVNKT--NS--HLP--AGKQVEISLVNGAKNL-VVS------GPPQSLYG--- 388 Query: 236 FDT-------PSGP--SII--------ITSLFLFILSFF 257 + PSG S I ++ FL + S F Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427 Score = 29.9 bits (67), Expect = 0.63 Identities = 34/278 (12%), Positives = 69/278 (24%), Gaps = 123/278 (44%) Query: 7 IRALFSGI-----GIVLSTGPLGCFII-----WQRIAYFGDTIAHSALLGVALSLIFQL- 55 +R+ G G+V + I W ++ S A++++F + Sbjct: 263 LRSYLKGATGHSQGLVTAV------AIAETDSW-------ESFFVSVRK--AITVLFFIG 307 Query: 56 -------PLTICIFMIATLTSLVLLQ--IQKNEA----------LSSDAILGVITH---- 92 P T +L +L + ++ NE L+ + + + Sbjct: 308 VRCYEAYPNT-------SLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359 Query: 93 ----STISLALVILSFMKWVNTDLTSF--------LFG------DILAVNTTDILLIWGI 134 + ++L VN + L+G A + D Sbjct: 360 LPAGKQVEISL--------VNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSGLD------- 403 Query: 135 GFLNIMILFKIWKP-----LLATTVNYE---LAKAEGMQPEKIKLIFIMITSLMISVSIK 186 I F K L + L A + I + Sbjct: 404 ---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS----DLIN------------KDLV 444 Query: 187 FIGITLITSLLILP---TVTARRFSTSPENMAILATII 221 ++ + +P T + I I+ Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERIV 480 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.145 0.424 Gapped Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,095,786 Number of extensions: 88859 Number of successful extensions: 277 Number of sequences better than 10.0: 1 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 21 Length of query: 260 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 170 Effective length of database: 3,511,270 Effective search space: 596915900 Effective search space used: 596915900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (26.0 bits)