HHsearch alignment for GI: 254780720 and conserved domain: cd01046
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=98.89 E-value=4.6e-07 Score=62.63 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHH
Q ss_conf 99999999999999999999999999815994789999999999999999999999995399714378225720488989
Q gi|254780720|r 4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVE 83 (164)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~ 83 (164)
T Consensus 1 ~~E~nL~~aFaGESqA~~kY~~~A~~A~keGy~~IA~~F~~tA~~E~~HA~~~~~~---~g~~~------------~~t~ 65 (123)
T cd01046 1 DLEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAEL---LGKVS------------EDTK 65 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCC------------CCHH
T ss_conf 98879999983679999999999999988584999999999999899999999987---39998------------6699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999970998899999999999999999999999999
Q gi|254780720|r 84 GLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI 140 (164)
Q Consensus 84 e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l 140 (164)
T Consensus 66 eNL~~a~~GE~~e~~~~~~~a~~A~eEGf~eia~~f~~~a~~E~~H~~r~~~lLery 122 (123)
T cd01046 66 ENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999975167886059999999887879999999999999999999999998764