HHsearch alignment for GI: 254780720 and conserved domain: cd07909
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=91.34 E-value=1.1 Score=23.84 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC----------C
Q ss_conf 999999999999999999999999815994789999999999999999999999995399714378225----------7
Q gi|254780720|r 6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA----------P 75 (164)
Q Consensus 6 ~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~----------p 75 (164)
T Consensus 5 ~~~L~d~y~aE~Q~~~~l~~m~~~a---~~peLk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli~e~~~~ 81 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKAA---TSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999999999883---8999999999999999999999999999819996667408999999999999
Q ss_pred CCCC--CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 2048--89899--99999999999999999999999970998899999999999999
Q gi|254780720|r 76 VISA--NDVEG--LFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 (164)
Q Consensus 76 ~~~~--~~~~e--~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~e 128 (164)
T Consensus 82 ~~~~~~~~v~Da~li~aaq~~EHyEIA~YgtL~~~A~~lG~~e~a~lL~~~L~EE~~ 138 (147)
T cd07909 82 IEETGDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQETLDEEKA 138 (147)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 864488889999999999999999999999999999885987899999999999999