HHsearch results for GI: 254780720 and protein with PDBid: 1ji4_A
>1ji4_A Neutrophil-activating protein A; dodecamer, four-helix bundle, metal transport; 2.52A {Helicobacter pylori} SCOP: a.25.1.1
Probab=99.36 E-value=1e-10 Score=83.51 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--------CCCCCCC
Q ss_conf 99999999999999999999999998159947899999999999999999999999953997143--------7822572
Q gi|254780720|r 5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKF--------SSIEAPV 76 (164)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~--------~~i~~p~ 76 (164)
+.+.||..+.........+..+.=.+.+.++..+..+|..+..+.++|++.+.+||..+||.|.. +.++.|+
T Consensus 3 ~~e~L~~~lA~~~~l~~k~~~~HWnv~G~~F~~lH~~~ee~y~~~~~~~D~iAERI~~Lg~~p~~~~~~~~~~s~i~~~~ 82 (144)
T 1ji4_A 3 TFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEET 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 99999999989999999984000102788849999999999999999999999999980888999999998758787667
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 0488989999999999999999999999999970998899999999999
Q gi|254780720|r 77 ISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE 125 (164)
Q Consensus 77 ~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E 125 (164)
..+.++.++++..++.+..+...++++++.|.+.+|++|.++++.++.+
T Consensus 83 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~~~D~~t~~ll~~~~~~ 131 (144)
T 1ji4_A 83 KTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAK 131 (144)
T ss_dssp CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8988889999999999999999988899999886998789999999999